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Showing papers by "United States Department of Energy published in 2021"


Journal ArticleDOI
TL;DR: The Unified Human Gastrointestinal Genome (UHGG) collection, comprising 204,938 nonredundant genomes from 4,644 gut prokaryotes, is presented, providing comprehensive resources for microbiome researchers.
Abstract: Comprehensive, high-quality reference genomes are required for functional characterization and taxonomic assignment of the human gut microbiota. We present the Unified Human Gastrointestinal Genome (UHGG) collection, comprising 204,938 nonredundant genomes from 4,644 gut prokaryotes. These genomes encode >170 million protein sequences, which we collated in the Unified Human Gastrointestinal Protein (UHGP) catalog. The UHGP more than doubles the number of gut proteins in comparison to those present in the Integrated Gene Catalog. More than 70% of the UHGG species lack cultured representatives, and 40% of the UHGP lack functional annotations. Intraspecies genomic variation analyses revealed a large reservoir of accessory genes and single-nucleotide variants, many of which are specific to individual human populations. The UHGG and UHGP collections will enable studies linking genotypes to phenotypes in the human gut microbiome.

485 citations


Journal ArticleDOI
TL;DR: The Metagenomic Gut Virus catalogue as discussed by the authors contains 189,680 genomes from 11,810 publicly available human stool metagenomes and identified 54,118 candidate viral species, 92% of which were not found in existing databases.
Abstract: Bacteriophages have important roles in the ecology of the human gut microbiome but are under-represented in reference databases. To address this problem, we assembled the Metagenomic Gut Virus catalogue that comprises 189,680 viral genomes from 11,810 publicly available human stool metagenomes. Over 75% of genomes represent double-stranded DNA phages that infect members of the Bacteroidia and Clostridia classes. Based on sequence clustering we identified 54,118 candidate viral species, 92% of which were not found in existing databases. The Metagenomic Gut Virus catalogue improves detection of viruses in stool metagenomes and accounts for nearly 40% of CRISPR spacers found in human gut Bacteria and Archaea. We also produced a catalogue of 459,375 viral protein clusters to explore the functional potential of the gut virome. This revealed tens of thousands of diversity-generating retroelements, which use error-prone reverse transcription to mutate target genes and may be involved in the molecular arms race between phages and their bacterial hosts.

159 citations


ReportDOI
12 Aug 2021
TL;DR: Zurawski et al. as discussed by the authors used the Deep Dive process to discuss and analyze current and planned science use cases and anticipated data output of a particular use case, site, or project to help inform the strategic planning of a campus or regional networking environment.
Abstract: Author(s): Zurawski, Jason; Addleman, Hans; Miller, Ken; Southworth, Doug | Abstract: EPOC uses the Deep Dive process to discuss and analyze current and planned science use cases and anticipated data output of a particular use case, site, or project to help inform the strategic planning of a campus or regional networking environment. This includes understanding future needs related to network operations, network capacity upgrades, and other technological service investments. A Deep Dive comprehensively surveys major research stakeholders’ plans and processes in order to investigate data management requirements over the next 5–10 years. Deep Dives help ensure that key stakeholders have a common understanding of the issues and the actions that a campus or regional network may need to undertake to offer solutions. The EPOC team leads the effort and relies on collaboration with the hosting site or network, and other affiliated entities that participate in the process. EPOC organizes, convenes, executes, and shares the outcomes of the review with all stakeholders. Between May 2021 and August 2021, staff members from the Engagement and Performance Operations Center (EPOC) met with researchers and staff from the National Oceanic and Atmospheric Administration (NOAA)'s N-Wave (the Enterprise network that supports the NOAA mission) and National Centers for Environmental Information (NCEI)'s Fisheries Acoustics Archive for the purpose of a recording a Deep Dive into research drivers. The goal of these meetings was to help characterize the requirements for the research use case, and to enable cyberinfrastructure support staff to better understand the needs of the researchers they support.

150 citations


Journal ArticleDOI
TL;DR: In this article, the authors report results from a new survey on wind costs, compare those with previous results and discuss the accuracy of the earlier predictions and conclude that there is considerable uncertainty about future costs.
Abstract: Wind energy has experienced accelerated cost reduction over the past five years—far greater than predicted in a 2015 expert elicitation. Here we report results from a new survey on wind costs, compare those with previous results and discuss the accuracy of the earlier predictions. We show that experts in 2020 expect future onshore and offshore wind costs to decline 37–49% by 2050, resulting in costs 50% lower than predicted in 2015. This is due to cost reductions witnessed over the past five years and expected continued advancements. If realized, these costs might allow wind to play a larger role in energy supply than previously anticipated. Considering both surveys, we also conclude that there is considerable uncertainty about future costs. Our results illustrate the importance of considering cost uncertainty, highlight the value and limits of using experts to reveal those uncertainties, and yield possible lessons for energy modellers and expert elicitation. Costs of renewable energy generation have fallen rapidly in recent years, often faster than predicted. Wiser et al. undertake an expert elicitation survey to project wind power costs to 2050, finding substantial continued cost reductions, and compare back to a previous survey to understand what has changed.

143 citations


Journal ArticleDOI
TL;DR: In this paper, the authors discuss a series of studies on the reactivity of silicon that, collectively, paint a picture of how the chemistry of silicon exacerbates the calendar aging of lithium-ion cells.
Abstract: High-energy batteries for automotive applications require cells to endure well over a decade of constant use, making their long-term stability paramount. This is particularly challenging for emerging cell chemistries containing silicon, for which extended testing information is scarce. While much of the research on silicon anodes has focused on mitigating the consequences of volume changes during cycling, comparatively little is known about the time-dependent degradation of silicon-containing batteries. Here we discuss a series of studies on the reactivity of silicon that, collectively, paint a picture of how the chemistry of silicon exacerbates the calendar aging of lithium-ion cells. Assessing and mitigating this shortcoming should be the focus of future research to fully realize the benefits of this battery technology. Silicon-containing batteries are increasingly becoming a reality in the mass market, but their calendar aging behaviours have received comparatively little attention. Researchers from the Silicon Consortium Project discuss the issues surrounding the calendar lifetime of silicon anodes for lithium-ion batteries.

89 citations


Journal ArticleDOI
17 Mar 2021-Joule
TL;DR: In this article, the authors highlight key challenges and R&D needs in developing zero-carbon industrial heating technologies and identify crosscutting challenges to the development and adoption of zero carbon industrial heat technologies, the solution to any of which would constitute a significant breakthrough on industrial decarbonization.

82 citations


Journal ArticleDOI
TL;DR: In this paper, an atomic level modification of a Au23 NC is made by substituting two surface Au atoms with two Cd atoms, and it enhances the CO2 reduction reaction selectivity to 90-95 % at the applied potential between -0.5 to 0.9 V.
Abstract: Thiolate-protected gold nanoclusters (NCs) are promising catalytic materials for the electrochemical CO2 reduction reaction (CO2 RR). In this work an atomic level modification of a Au23 NC is made by substituting two surface Au atoms with two Cd atoms, and it enhances the CO2 RR selectivity to 90-95 % at the applied potential between -0.5 to -0.9 V, which is doubled compared to that of the undoped Au23 . Additionally, the Cd-doped Au19 Cd2 exhibits the highest CO2 RR activity (2200 mA mg-1 at -1.0 V vs. RHE) among the reported NCs. This synergetic effect between Au and Cd is remarkable. Density-functional theory calculations reveal that the exposure of a sulfur active site upon partial ligand removal provides an energetically feasible CO2 RR pathway. The thermodynamic energy barrier for CO formation is 0.74 eV lower on Au19 Cd2 than on Au23 . These results reveal that Cd doping can boost the CO2 RR performance of Au NCs by modifying the surface geometry and electronic structure, which further changes the intermediate binding energy. This work offers insights into the surface doping mechanism of the CO2 RR and bimetallic synergism.

81 citations


Journal ArticleDOI
TL;DR: In this paper, a detailed discussion on the mechanism of DRM in perovskite derived catalysts is presented, which includes a detailed analysis on the physicochemical and catalytic behavior of these catalysts.

80 citations


Journal ArticleDOI
TL;DR: The effectiveness of the presented method is successfully verified under scaled-down operating condition of hybrid electric tram on the reduced-scale test platform and it has advantages in hydrogen consumption, state of charge fluctuation, efficiency, and fuel cell output power dynamics.

77 citations


Journal ArticleDOI
TL;DR: In this article, a CALPHAD-based high-throughput computational method was used to design light, strong, and low-cost high-entropy alloys for elevated-temperature applications.
Abstract: Developing affordable and light high-temperature materials alternative to Ni-base superalloys has significantly increased the efforts in designing advanced ferritic superalloys. However, currently developed ferritic superalloys still exhibit low high-temperature strengths, which limits their usage. Here we use a CALPHAD-based high-throughput computational method to design light, strong, and low-cost high-entropy alloys for elevated-temperature applications. Through the high-throughput screening, precipitation-strengthened lightweight high-entropy alloys are discovered from thousands of initial compositions, which exhibit enhanced strengths compared to other counterparts at room and elevated temperatures. The experimental and theoretical understanding of both successful and failed cases in their strengthening mechanisms and order-disorder transitions further improves the accuracy of the thermodynamic database of the discovered alloy system. This study shows that integrating high-throughput screening, multiscale modeling, and experimental validation proves to be efficient and useful in accelerating the discovery of advanced precipitation-strengthened structural materials tuned by the high-entropy alloy concept.

72 citations


Journal ArticleDOI
TL;DR: In this article, a combined heat and power system based on biomass gasification, compressed air energy storage (CAES), and gas turbine power plant is introduced and analyzed by using ASPEN PLUS.

Journal ArticleDOI
21 May 2021
TL;DR: The Malaspina Gene Database as mentioned in this paper was used to analyze 58 metagenomes from tropical and subtropical deep oceans to generate a deep metagenome-assembled Genomes.
Abstract: The deep sea, the largest ocean’s compartment, drives planetary-scale biogeochemical cycling. Yet, the functional exploration of its microbial communities lags far behind other environments. Here we analyze 58 metagenomes from tropical and subtropical deep oceans to generate the Malaspina Gene Database. Free-living or particle-attached lifestyles drive functional differences in bathypelagic prokaryotic communities, regardless of their biogeography. Ammonia and CO oxidation pathways are enriched in the free-living microbial communities and dissimilatory nitrate reduction to ammonium and H 2 oxidation pathways in the particle-attached, while the Calvin Benson-Bassham cycle is the most prevalent inorganic carbon fixation pathway in both size fractions. Reconstruction of the Malaspina Deep Metagenome-Assembled Genomes reveals unique non-cyanobacterial diazotrophic bacteria and chemolithoautotrophic prokaryotes. The widespread potential to grow both autotrophically and heterotrophically suggests that mixotrophy is an ecologically relevant trait in the deep ocean. These results expand our understanding of the functional microbial structure and metabolic capabilities of the largest Earth aquatic ecosystem.

Journal ArticleDOI
28 May 2021-Science
TL;DR: In this article, point defects are exploited to engineering the properties of functional materials ranging from semiconductors and superconductors to ferroics, and point defects have been widely exploited, dislocatio...
Abstract: Defects are essential to engineering the properties of functional materials ranging from semiconductors and superconductors to ferroics. Whereas point defects have been widely exploited, dislocatio...

Journal ArticleDOI
TL;DR: In this article, a photogenerate giant anisotropic terahertz nonlinear currents with vanishing scattering, driven by laser-induced coherent phonons of broken inversion symmetry in a centrosymmetric Dirac material ZrTe5.
Abstract: Dissipationless currents from topologically protected states are promising for disorder-tolerant electronics and quantum computation. Here, we photogenerate giant anisotropic terahertz nonlinear currents with vanishing scattering, driven by laser-induced coherent phonons of broken inversion symmetry in a centrosymmetric Dirac material ZrTe5. Our work suggests that this phononic terahertz symmetry switching leads to formation of Weyl points, whose chirality manifests in a transverse, helicity-dependent current, orthogonal to the dynamical inversion symmetry breaking axis, via circular photogalvanic effect. The temperature-dependent topological photocurrent exhibits several distinct features: Berry curvature dominance, particle–hole reversal near conical points and chirality protection that is responsible for an exceptional ballistic transport length of ~10 μm. These results, together with first-principles modelling, indicate two pairs of Weyl points dynamically created by B1u phonons of broken inversion symmetry. Such phononic terahertz control breaks ground for coherent manipulation of Weyl nodes and robust quantum transport without application of static electric or magnetic fields. Femtosecond optical pulses are used to generate coherent phonons that break inversion symmetry and drive anisotropic terahertz photocurrents in the topological material ZrTe5.

Journal ArticleDOI
TL;DR: In this paper, an incremental space-time reduced basis construction algorithm was proposed for large-scale particle transport simulation with million and billion degrees of freedom, where the block structure in the space time reduced basis is exploited, which enables the avoidance of constructing the reduced space time basis.

Journal ArticleDOI
Kyle B. Delwiche1, Sara H. Knox2, Avni Malhotra3, Etienne Fluet-Chouinard4, Gavin McNicol, Sarah Feron5, Zutao Ouyang6, Dario Papale, Carlo Trotta7, E. Canfora8, You Wei Cheah9, D. S. Christianson10, Ma Carmelita R. Alberto11, Pavel Alekseychik12, Mika Aurela13, Dennis D. Baldocchi14, Sheel Bansal15, David P. Billesbach10, Gil Bohrer11, Rosvel Bracho5, Nina Buchmann13, David I. Campbell14, Gerardo Celis16, Jiquan Chen17, Weinan Chen18, Housen Chu19, Higo J. Dalmagro, Sigrid Dengel20, Ankur R. Desai21, Matteo Detto22, Han Dolman23, Elke Eichelmann18, Eugénie S. Euskirchen24, Daniela Famulari25, Kathrin Fuchs26, M. Goeckede, Sébastien Gogo27, Mangaliso J. Gondwe28, Jordan P. Goodrich14, Pia Gottschalk29, Scott L. Graham24, Martin Heimann, Manuel Helbig26, Carole Helfter30, Kyle S. Hemes31, Takashi Hirano32, David Y. Hollinger33, Lukas Hörtnagl34, Hiroki Iwata29, Adrien Jacotot, Gerald Jurasinski35, Minseok Kang, Kuno Kasak36, John King37, Janina Klatt, Franziska Koebsch38, Ken W. Krauss15, Derrick Y.F. Lai33, Annalea Lohila34, Annalea Lohila7, Ivan Mammarella39, Luca Belelli Marchesini, Giovanni Manca, Jaclyn Hatala Matthes35, Trofim C. Maximov40, Lutz Merbold41, Bhaskar Mitra37, T. H. Morin42, Eiko Nemitz25, Mats Nilsson38, Shuli Niu9, Walter C. Oechel43, Patricia Y. Oikawa44, Keisuke Ono45, Matthias Peichl38, Olli Peltola45, Michele L. Reba46, Andrew D. Richardson37, William J. Riley5, Benjamin R. K. Runkle, Youngryel Ryu47, Torsten Sachs48, Ayaka Sakabe, Camilo Rey Sanchez49, Edward A. G. Schuur50, Karina V. R. Schäfer9, Oliver Sonnentag51, Jed P. Sparks52, Ellen Stuart-Haëntjens1, Cove Sturtevant53, Ryan C. Sullivan54, Daphne Szutu1, Jonathan E. Thom45, Margaret S. Torn1, Eeva Stiina Tuittila1, Jessica Turner45, Masahito Ueyama55, Alex C. Valach8, Rodrigo Vargas56, Andrej Varlagin1, Alma Vázquez-Lule56, Joseph Verfaillie1, Timo Vesala1, George L. Vourlitis57, E. J. Ward15, Christian Wille1, Georg Wohlfahrt48, Guan Xhuan Wong, Zhen Zhang49, Donatella Zona1, Lisamarie Windham-Myers15, Benjamin Poulter1, Robert B. Jackson1 
Stanford University1, University of British Columbia2, University of Santiago, Chile3, Tuscia University4, Lawrence Berkeley National Laboratory5, International Rice Research Institute6, Finnish Meteorological Institute7, University of California, Berkeley8, United States Geological Survey9, University of Nebraska–Lincoln10, Ohio State University11, University of Florida12, ETH Zurich13, University of Waikato14, United States Department of the Interior15, State University System of Florida16, Michigan State University17, University College Dublin18, University of Alaska Fairbanks19, Karlsruhe Institute of Technology20, Max Planck Society21, University of Orléans22, VU University Amsterdam23, Landcare Research24, Université de Montréal25, Dalhousie University26, Centre national de la recherche scientifique27, University of Botswana28, Shinshu University29, North Carolina State University30, Weihenstephan-Triesdorf University of Applied Sciences31, Hokkaido University32, The Chinese University of Hong Kong33, University of Helsinki34, Wellesley College35, International Livestock Research Institute36, Northern Arizona University37, Swedish University of Agricultural Sciences38, Agricultural Research Service39, Russian Academy of Sciences40, Kyoto University41, Rutgers University42, National Ecological Observatory Network43, California State University44, University of Wisconsin-Madison45, United States Department of Agriculture46, Seoul National University47, University of Innsbruck48, University of Maryland, College Park49, University of Sheffield50, Université du Québec51, Cornell University52, Battelle Memorial Institute53, United States Department of Energy54, Osaka Prefecture University55, University of Delaware56, California State University San Marcos57
TL;DR: The FLUXNET-CH4 dataset as mentioned in this paper is the first open-source global dataset of CH4 EC measurements and includes half-hourly and daily gap-filled and non-gap-filled aggregated CH4 fluxes and meteorological data from 79 sites globally: 42 freshwater wetlands, 6 brackish and saline wetlands, 7 formerly drained ecosystems, 7 rice paddy sites, 2 lakes and 15 uplands.
Abstract: . Methane (CH4) emissions from natural landscapes constitute roughly half of global CH4 contributions to the atmosphere, yet large uncertainties remain in the absolute magnitude and the seasonality of emission quantities and drivers. Eddy covariance (EC) measurements of CH4 flux are ideal for constraining ecosystem-scale CH4 emissions due to quasi-continuous and high-temporal-resolution CH4 flux measurements, coincident carbon dioxide, water, and energy flux measurements, lack of ecosystem disturbance, and increased availability of datasets over the last decade. Here, we (1) describe the newly published dataset, FLUXNET-CH4 Version 1.0, the first open-source global dataset of CH4 EC measurements (available at https://fluxnet.org/data/fluxnet-ch4-community-product/, last access: 7 April 2021). FLUXNET-CH4 includes half-hourly and daily gap-filled and non-gap-filled aggregated CH4 fluxes and meteorological data from 79 sites globally: 42 freshwater wetlands, 6 brackish and saline wetlands, 7 formerly drained ecosystems, 7 rice paddy sites, 2 lakes, and 15 uplands. Then, we (2) evaluate FLUXNET-CH4 representativeness for freshwater wetland coverage globally because the majority of sites in FLUXNET-CH4 Version 1.0 are freshwater wetlands which are a substantial source of total atmospheric CH4 emissions; and (3) we provide the first global estimates of the seasonal variability and seasonality predictors of freshwater wetland CH4 fluxes. Our representativeness analysis suggests that the freshwater wetland sites in the dataset cover global wetland bioclimatic attributes (encompassing energy, moisture, and vegetation-related parameters) in arctic, boreal, and temperate regions but only sparsely cover humid tropical regions. Seasonality metrics of wetland CH4 emissions vary considerably across latitudinal bands. In freshwater wetlands (except those between 20∘ S to 20∘ N) the spring onset of elevated CH4 emissions starts 3 d earlier, and the CH4 emission season lasts 4 d longer, for each degree Celsius increase in mean annual air temperature. On average, the spring onset of increasing CH4 emissions lags behind soil warming by 1 month, with very few sites experiencing increased CH4 emissions prior to the onset of soil warming. In contrast, roughly half of these sites experience the spring onset of rising CH4 emissions prior to the spring increase in gross primary productivity (GPP). The timing of peak summer CH4 emissions does not correlate with the timing for either peak summer temperature or peak GPP. Our results provide seasonality parameters for CH4 modeling and highlight seasonality metrics that cannot be predicted by temperature or GPP (i.e., seasonality of CH4 peak). FLUXNET-CH4 is a powerful new resource for diagnosing and understanding the role of terrestrial ecosystems and climate drivers in the global CH4 cycle, and future additions of sites in tropical ecosystems and site years of data collection will provide added value to this database. All seasonality parameters are available at https://doi.org/10.5281/zenodo.4672601 (Delwiche et al., 2021). Additionally, raw FLUXNET-CH4 data used to extract seasonality parameters can be downloaded from https://fluxnet.org/data/fluxnet-ch4-community-product/ (last access: 7 April 2021), and a complete list of the 79 individual site data DOIs is provided in Table 2 of this paper.

Journal ArticleDOI
TL;DR: Improved guidelines for cost evaluation of Carbon Capture and Storage from industrial applications are contributed to the development of improved guidelines building on previous work in the field.

Journal ArticleDOI
TL;DR: In this article, the upcycling process of waste plastics into value-added product graphene nanosheets (GNs) and their subsequent applications in dye sensitized solar cells (DSSC) and supercapacitors were reported.
Abstract: The present study reports the upcycling process of waste plastics into value-added product graphene nanosheets (GNs) and their subsequent applications in dye sensitized solar cells (DSSCs) and supercapacitors. Bentonite nanoclay has been used as an agent for the degradation of waste plastics with two step pyrolysis processes at 450 °C and 945 °C in an inert atmosphere of N2 gas to obtain GNs. The GNs with few layers were confirmed by the RAMAN spectroscopy, XRD and HRTEM analyses. Further, FT-IR and EDX analyses also performed for the identification and quantitative analysis of functional groups in GNs. The GNs thus synthesized from plastic waste have been used for the fabrication of DSSCs and supercapacitors. The DSSC fabrication with GNs as part of photo-anode with polymeric electrolyte showed a high fill factor of 86.4% and high Voc of 0.77 V, which were also supported by the computational findings. On the other hand, the utilization of GNs as an active layer material of supercapacitor electrodes offered a high specific capacitance of 398 F/g with a scan rate of 0.005 V/s. The supercapacitor also exhibited significant energy density (Ed) and power density (Pd) of 38 Wh/kg and 1009.74 W/kg, respectively. Thus, the process illustrated the utility of waste plastics upcycling for conservation of EEE i.e., ecology, economy and energy for better tomorrow.

Journal ArticleDOI
TL;DR: In this article, the utilization of mixed methanol-ethanol system for the production of biodiesel from waste cooking oil (WCO) using enhanced eggshell-derived calcium oxide (CaO) nano-catalyst was investigated.
Abstract: In this report, the utilization of mixed methanol-ethanol system for the production of biodiesel from waste cooking oil (WCO) using enhanced eggshell-derived calcium oxide (CaO) nano-catalyst was investigated. CaO nano-catalyst was produced by calcination of eggshell powder at 900 °C and followed by hydration-dehydration treatment to improve its catalytic activity. The particle size, morphology, and elemental composition of a catalyst were characterized by using XRD, SEM, and EDX techniques, respectively. After hydration-dehydration the shape of a catalyst was changed from a rod-like to honeycomb-like porous microstructure. Likewise, average particle size was reduced from 21.30 to 13.53 nm, as a result, its surface area increases. The main factors affecting the biodiesel yield were investigated, accordingly, an optimal biodiesel yield of 94% was obtained at 1:12 oil to methanol molar ratio, 2.5 wt% catalyst loading, 60 °C, and 120-min reaction time. A biodiesel yield of 88% was obtained using 6:6 equimolar ratio of methanol to ethanol, the yield even increased to 91% by increasing the catalyst loading to 3.5 wt%. Moreover, by slightly increasing the share of methanol in the mixture, at 8:4 ratio, the maximum biodiesel yield could reach 92%. Therefore, we suggest the utilization of methanol-ethanol mixture as a reactant and eggshell-derived CaO as a catalyst for enhanced conversion of WCO into biodiesel. It is a very promising approach for the development of low-cost and environmentally friendly technology. Properties of the biodiesel were also found in good agreement with the American (ASTM D6571) fuel standards.

Journal ArticleDOI
TL;DR: Serra et al. as discussed by the authors described Candidatus Organicella extenuata, a member of the Verrucomicrobia with a highly reduced genome, recovered as a metagenome-assembled genome with genetic code 4 (UGA-to-Trp recoding) from Organic Lake.
Abstract: Organic Lake in Antarctica is a marine-derived, cold (−13∘C), stratified (oxic-anoxic), hypersaline (>200 gl–1) system with unusual chemistry (very high levels of dimethylsulfide) that supports the growth of phylogenetically and metabolically diverse microorganisms. Symbionts are not well characterized in Antarctica. However, unicellular eukaryotes are often present in Antarctic lakes and theoretically could harbor endosymbionts. Here, we describe Candidatus Organicella extenuata, a member of the Verrucomicrobia with a highly reduced genome, recovered as a metagenome-assembled genome with genetic code 4 (UGA-to-Trp recoding) from Organic Lake. It is closely related to Candidatus Pinguicocccus supinus (163,218 bp, 205 genes), a newly described cytoplasmic endosymbiont of the freshwater ciliate Euplotes vanleeuwenhoeki ( Serra et al., 2020 ). At 158,228 bp (encoding 194 genes), the genome of Ca. Organicella extenuata is among the smallest known bacterial genomes and similar to the genome of Ca. Pinguicoccus supinus (163,218 bp, 205 genes). Ca. Organicella extenuata retains a capacity for replication, transcription, translation, and protein-folding while lacking any capacity for the biosynthesis of amino acids or vitamins. Notably, the endosymbiont retains a capacity for fatty acid synthesis (type II) and iron–sulfur (Fe-S) cluster assembly. Metagenomic analysis of 150 new metagenomes from Organic Lake and more than 70 other Antarctic aquatic locations revealed a strong correlation in abundance between Ca. Organicella extenuata and a novel ciliate of the genus Euplotes. Like Ca. Pinguicoccus supinus, we infer that Ca. Organicella extenuata is an endosymbiont of Euplotes and hypothesize that both Ca. Organicella extenuata and Ca. Pinguicocccus supinus provide fatty acids and Fe-S clusters to their Euplotes host as the foundation of a mutualistic symbiosis. The discovery of Ca. Organicella extenuata as possessing genetic code 4 illustrates that in addition to identifying endosymbionts by sequencing known symbiotic communities and searching metagenome data using reference endosymbiont genomes, the potential exists to identify novel endosymbionts by searching for unusual coding parameters.

Journal ArticleDOI
TL;DR: In this article, low-cost Ionic liquid (IL) is used for wheat straw pretreatment to produce bio-ethanol in conditions characterized by a temperature of 130°C, a high solid-to-solvent load ratio of 1:5 g/g, and 20% water to separate lignin and carbohydrates from the source.
Abstract: Low-cost Ionic Liquid (IL) is a promising method for the lignocellulosic biomass pretreatment to produce bioethanol. This study investigates utilizing low-cost IL, [TEA][HSO4], for wheat straw pretreatment. The pretreatment was investigated in conditions characterized by a temperature of 130 °C, a high solid-to-solvent load ratio of 1:5 g/g, and 20 wt % water to separate lignin and carbohydrates from the source, which would subsequently undergo enzymatic hydrolysis. The highest delignification rate of 80% and the hemicellulose removal rate of 64.45% were observed in the case of a 3-h pretreated sample with [TEA][HSO4]. Two biomass samples pretreated for 0.5 h and 3-h showed high glucose saccharification yield levels of 50.36 and 87.19%, respectively, and 78.23% xylose yield was achieved in 3-h pretreated sample in enzymatic hydrolysis with commercial enzyme CelluMax in 72 h. Ethanol production and yield of 3-h pretreated biomass reached 43.1 g/L and 84.34% of the maximum theoretical yield after 48 h of fermentation time. However, the yield of the untreated biomass was only 10.76%. Obtained results clearly demonstrated that pretreatment with low-cost IL prior to enzymatic hydrolysis led to higher ethanol yield due to successful delignification. The process developed in this study exhibited economic feasibility of this technique in industrial bioprocess.

Journal ArticleDOI
TL;DR: A novel disturbance-observer-based complementary sliding-mode (DO-CSM) speed controller for the field-oriented controlled permanent-magnet synchronous motor (FOC-PMSM) drive system is proposed and experimental results verify the effectiveness and superiority of the proposed DO- CSM speed controller.
Abstract: This article proposes a novel disturbance-observer-based complementary sliding-mode (DO-CSM) speed controller for the field-oriented controlled permanent-magnet synchronous motor (FOC-PMSM) drive system. At first, the rotor speed dynamics of the PMSM drive system considering the lumped disturbance, which consists of external disturbances, parametric uncertainties, and unmodeled dynamics, is presented. Then, the classic CSM speed controller and a typical artificial neural network (ANN)-based CSM speed controller, i.e., the Elman NN (ENN)-based intelligent CSM (ENN-ICSM) speed controller for the FOC-PMSM drive system, are reviewed. Afterward, the design of the proposed DO-CSM speed controller, which combines the signum-function-based CSM controller with the super-twisting sliding-mode observer (STSMO), is presented. In such a speed controller, the rotor speed tracking control is accomplished by the adopted CSM controller, whereas the STSMO is employed to estimate and compensate for the lumped disturbance in the rotor speed dynamics. Finally, experimental comparisons among the proposed DO-CSM speed controller, the classic CSM speed controller, and three selected ENN-ICSM speed controllers are carried out. Experimental results verify the effectiveness and superiority of the proposed DO-CSM speed controller.

Journal ArticleDOI
Martin Schweinsberg1, Michael Feldman2, Nicola Staub2, Olmo van den Akker3  +175 moreInstitutions (121)
TL;DR: DataExplained as discussed by the authors is a crowdsourced initiative that allows independent analysts to test two hypotheses regarding the effects of scientists' gender and professional status on verbosity during group meetings using the same dataset.

Journal ArticleDOI
TL;DR: In this article, the authors investigated the recycling of carbon dioxide from gas-fired power plant emissions into synthetic natural gas based on a novel power-to-gas process with the aim of chemical energy storage and emission reduction.

Journal ArticleDOI
TL;DR: In this paper, the authors present an extensive literature review of the main published investigations, to assess and quantify the authors' different visions, and provide policy makers with a sound base for policy development towards achieving climate goals.
Abstract: The European New Green Deal and the REDII set ambitious targets, aiming to achieve a climate-neutral Europe by 2050. The transport sector is the most critical area to decarbonize, given the rigidity of both infrastructure and end-use technologies, as well as the challenge of reaching cost-effective production of sustainable advanced renewable fuels. Several researchers, stakeholders and groups of interest, such as international and governmental organisations, NGOs, business analysists, scientists and other actors elaborated scenarios on biofuels market penetration by 2050. These studies are largely used by policy makers, even if not necessarily were subject to a rigid peer review and verification process. This work presents an extensive literature review of the main published investigations, to assess and quantify the authors' different visions. These forecasts intend to evaluate the possible future development of the sector based on current and foreseeable policies, as well as industry and investors’ business plans; at the same time, these estimates should also provide policy makers with a sound base for policy development towards achieving climate goals. Through preliminary screening, based on a methodology of a set of ex-ante conditions, this work identified the most relevant publications and structured the analysis of the collected data. A total of 18 publications were selected from the literature review, resulting in 56 scenarios to be examined. This work allowed to achieve a comprehensive summary and quantification of the selected scenarios, all of which focus on biofuel contribution to transport decarbonisation in the period 2030–2050. Given the occurrence of several factors, as the ongoing and future technological development, the adoption of more efficient mobility models, the hybridization and electrification of transports, the Total Fuel Consumption for the transport sector is expected to reduce in Europe: averaged projections from the analyzed scenarios account for 312.8 Mtoe in 2030 and 274.2 Mtoe in 2050. Biofuels are expected to significantly contribute to achieve the EU targets, with a progressive shift towards advanced feedstock: on average, their total contribution is expected to account for 24.5 Mtoe in 2030, and for 48.3 Mtoe in 2050, while advanced biofuels are projected for an average contribution of 8.7 Mtoe in 2030 and 36.5 Mtoe in 2050. This work analysed pre-pandemic published scenarios: the effects that the COVID-19 pandemic is having on the global as well as EU economies are uncertain, but there is a serious risk of hampering and postponing investment decisions in the whole energy area, making the achievement of RED and EU Green Deal targets even more challenging in this historical moment.

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TL;DR: In this paper, the authors discuss recent advances in "omics" technologies, compare the pros and cons of the different technologies, and discuss the necessary requirements for carrying out multi-omics experiments.
Abstract: Biomanufacturing is a key component of biotechnology that uses biological systems to produce bioproducts of commercial relevance, which are of great interest to the energy, material, pharmaceutical, food, and agriculture industries. Biotechnology-based approaches, such as synthetic biology and metabolic engineering are heavily reliant on "omics" driven systems biology to characterize and understand metabolic networks. Knowledge gained from systems biology experiments aid the development of synthetic biology tools and the advancement of metabolic engineering studies toward establishing robust industrial biomanufacturing platforms. In this review, we discuss recent advances in "omics" technologies, compare the pros and cons of the different "omics" technologies, and discuss the necessary requirements for carrying out multi-omics experiments. We highlight the influence of "omics" technologies on the production of biofuels and bioproducts by metabolic engineering. Finally, we discuss the application of "omics" technologies to agricultural and food biotechnology, and review the impact of "omics" on current COVID-19 research.

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TL;DR: In this article, a SuperDEM-CFD coupled model was developed and validated in open-source MFiX for simulating non-spherical particles fluidization hydrodynamics in fluidized beds.

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TL;DR: In this paper, a wrist-mounted wearable weather station is used to monitor environmental and physiological responses that span a wide range of spatial and temporal distributions, which can be extended in real-time to cover a large spatial distribution in a given city.
Abstract: Global climate is changing as a result of anthropogenic warming, leading to higher daily excursions of temperature in cities. Such elevated temperatures have great implications on human thermal comfort and heat stress, which should be closely monitored. Current methods for heat exposure assessments (surveys, microclimate measurements, and laboratory experiments), however, present several limitations: measurements are scattered in time and space and data gathered on outdoor thermal stress and comfort often does not include physiological and behavioral parameters. To address these shortcomings, Project Coolbit aims to introduce a human-centric approach to thermal comfort assessments. In this study, we propose and evaluate the use of wrist-mounted wearable devices to monitor environmental and physiological responses that span a wide range of spatial and temporal distributions. We introduce an integrated wearable weather station that records a) microclimate parameters (such as air temperature and humidity), b) physiological parameters (heart rate, skin temperature and humidity), and c) subjective feedback. The feasibility of this methodology to assess thermal comfort and heat stress is then evaluated using two sets of experiments: controlled-environment physiological data collection, and outdoor environmental data collection. We find that using the data obtained through the wrist-mounted wearables, core temperature can be predicted non-invasively with 95 percent of target attainment (PTA) within 0.27C. Additionally, a direct connection between the air temperature at the wrist (Ta,w) and the perceived activity level (PAV) of individuals was drawn. We observe that with increased Ta,w, the desire for physical activity is significantly reduced, reaching "Transition only" PAV level at 36C. These assessments reveal that the wearable methodology provides a comprehensive and accurate representation of human heat exposure, which can be extended in real-time to cover a large spatial distribution in a given city and quantify the impact of heat exposure on human life.

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TL;DR: In this paper, the authors used a positron-emission tomography scanner to record ortho-positronium (o-Ps) annihilations with single event estimation of o-Ps spin and determine the complete spectrum of an angular correlation operator sensitive to CPT-violating effects.
Abstract: Charged lepton system symmetry under combined charge, parity, and time-reversal transformation (CPT) remains scarcely tested. Despite stringent quantum-electrodynamic limits, discrepancies in predictions for the electron–positron bound state (positronium atom) motivate further investigation, including fundamental symmetry tests. While CPT noninvariance effects could be manifested in non-vanishing angular correlations between final-state photons and spin of annihilating positronium, measurements were previously limited by knowledge of the latter. Here, we demonstrate tomographic reconstruction techniques applied to three-photon annihilations of ortho-positronium atoms to estimate their spin polarisation without magnetic field or polarised positronium source. We use a plastic-scintillator-based positron-emission-tomography scanner to record ortho-positronium (o-Ps) annihilations with single-event estimation of o-Ps spin and determine the complete spectrum of an angular correlation operator sensitive to CPT-violating effects. We find no violation at the precision level of 10−4, with an over threefold improvement on the previous measurement. CPT violation could manifest itself in annihilating positronium events, but searching for this effect would require to know the spin of the annihilating system. Here, the authors do this using a positron-emission tomography scanner, finding no violation with a statistical precision of 10−4.

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TL;DR: In this article, a modified tubular still with v-corrugated wick materials and black jute clothes was compared under the weather Egyptian conditions to characterize the performance enhancement of the modified design.