United States Department of Energy

About: United States Department of Energy is a government organization based out in Washington D.C., District of Columbia, United States. It is known for research contribution in the topics: Catalysis & Coal. The organization has 13656 authors who have published 14177 publications receiving 556962 citations. The organization is also known as: DOE & Department of Energy.

Association of functionally significant Melanocortin-4 but not Melanocortin-3 receptor mutations with severe adult obesity in a large North American case–control study

Abstract: Functionally significant heterozygous mutations in the Melanocortin-4 receptor (MC4R) have been implicated in 2.5% of early onset obesity cases in European cohorts. The role of mutations in this gene in severely obese adults, particularly in smaller North American patient cohorts, has been less convincing. More recently, it has been proposed that mutations in a phylogenetically and physiologically related receptor, the Melanocortin-3 receptor (MC3R), could also be a cause of severe human obesity. The objectives of this study were to determine if mutations impairing the function of MC4R or MC3R were associated with severe obesity in North American adults. We studied MC4R and MC3R mutations detected in a total of 1821 adults (889 severely obese and 932 lean controls) from two cohorts. We systematically and comparatively evaluated the functional consequences of all mutations found in both MC4R and MC3R. The total prevalence of rare MC4R variants in severely obese North American adults was 2.25% (CI95%: 1.44–3.47) compared with 0.64% (CI95%: 0.26–1.43) in lean controls (P < 0.005). After classification of functional consequence, the prevalence of MC4R mutations with functional alterations was significantly greater when compared with controls (P < 0.005). In contrast, the prevalence of rare MC3R variants was not significantly increased in severely obese adults [0.67% (CI95%: 0.27–1.50) versus 0.32% (CI95%: 0.06–0.99)] (P = 0.332). Our results confirm that mutations in MC4R are a significant cause of severe obesity, extending this finding to North American adults. However, our data suggest that MC3R mutations are not associated with severe obesity in this population.

The Sequences of 1504 Mutants in the Model Rice Variety Kitaake Facilitate Rapid Functional Genomic Studies.

Abstract: The availability of a whole-genome sequenced mutant population and the cataloging of mutations of each line at a single-nucleotide resolution facilitate functional genomic analysis. To this end, we generated and sequenced a fast-neutron-induced mutant population in the model rice cultivar Kitaake (Oryza sativa ssp japonica), which completes its life cycle in 9 weeks. We sequenced 1504 mutant lines at 45-fold coverage and identified 91,513 mutations affecting 32,307 genes, i.e., 58% of all rice genes. We detected an average of 61 mutations per line. Mutation types include single-base substitutions, deletions, insertions, inversions, translocations, and tandem duplications. We observed a high proportion of loss-of-function mutations. We identified an inversion affecting a single gene as the causative mutation for the short-grain phenotype in one mutant line. This result reveals the usefulness of the resource for efficient, cost-effective identification of genes conferring specific phenotypes. To facilitate public access to this genetic resource, we established an open access database called KitBase that provides access to sequence data and seed stocks. This population complements other available mutant collections and gene-editing technologies. This work demonstrates how inexpensive next-generation sequencing can be applied to generate a high-density catalog of mutations.

First-principles calculations of the adsorption, diffusion, and dissociation of a CO molecule on the Fe(100) surface

Abstract: First-principles pseudopotential plane wave calculations based on spin-polarized density functional theory (DFT) and the generalized gradient approximation (GGA) have been used to study the adsorption of CO molecules on the Fe(100) surface. Among several possible adsorption configurations considered here, the most stable corresponds to a fourfold state in which a CO molecule is tilted relative to the surface normal by 50\ifmmode^\circ\else\textdegree\fi{}. In this case, the CO bond is elongated to 1.32 \AA{} and has a low vibrational stretching frequency of 1246 ${\mathrm{cm}}^{\mathrm{\ensuremath{-}}1}$ to be compared with the experimental gas phase value of 2143 ${\mathrm{cm}}^{\mathrm{\ensuremath{-}}1}$. The adsorption energy for this state is found to vary between 46.7 and 43.8 kcal/mol depending on the choice of exchange-correlation functional used in the DFT. A total of three adsorption sites have been located, and the relative adsorption energies are $E(\mathrm{fourfold})gE(\mathrm{twofold})\ensuremath{\approx}E(\mathrm{onefold})$ at lower surface coverage, and $E(\mathrm{fourfold})gE(\mathrm{onefold})gE(\mathrm{twofold})$ at higher coverage. A similar analysis performed for the C and O atoms indicates that the adsorption at the fourfold site is the most stable among various configurations, with adsorption energies of 186 and 145 kcal/mol, respectively. Additionally, we have demonstrated the possibility that a C atom embeds into the lattice in a twofold, bridgelike configuration with an adsorption energy of 154 kcal/mol. The minimum energy pathways for the surface diffusion of a CO molecule between selected pairs of local minima indicate that the barriers for these processes are generally quite small with values less than 2 kcal/mol. One exception to this is the diffusion out of the most stable fourfold site, where the barrier is predicted to be around 13 kcal/mol. Finally, the barriers for dissociation of CO bound in a fourfold site have been calculated to have values in the range of 24.5--28.2 kcal/mol, supporting the experimental observation that dissociation of CO bound to the surface seems to compete with CO desorption at 440 K.

Measurement of the Radiation Energy in the Radio Signal of Extensive Air Showers as a Universal Estimator of Cosmic-Ray Energy

Abstract: We measure the energy emitted by extensive air showers in the form of radio emission in the frequency range from 30 to 80 MHz. Exploiting the accurate energy scale of the Pierre Auger Observatory, we obtain a radiation energy of 15.8 \pm 0.7 (stat) \pm 6.7 (sys) MeV for cosmic rays with an energy of 1 EeV arriving perpendicularly to a geomagnetic field of 0.24 G, scaling quadratically with the cosmic-ray energy. A comparison with predictions from state-of-the-art first-principle calculations shows agreement with our measurement. The radiation energy provides direct access to the calorimetric energy in the electromagnetic cascade of extensive air showers. Comparison with our result thus allows the direct calibration of any cosmic-ray radio detector against the well-established energy scale of the Pierre Auger Observatory.