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Showing papers by "United States Geological Survey published in 2012"


Journal ArticleDOI
07 Jun 2012-Nature
TL;DR: It is argued that human actions are dismantling the Earth’s ecosystems, eliminating genes, species and biological traits at an alarming rate, and the question of how such loss of biological diversity will alter the functioning of ecosystems and their ability to provide society with the goods and services needed to prosper is asked.
Abstract: The most unique feature of Earth is the existence of life, and the most extraordinary feature of life is its diversity. Approximately 9 million types of plants, animals, protists and fungi inhabit the Earth. So, too, do 7 billion people. Two decades ago, at the first Earth Summit, the vast majority of the world's nations declared that human actions were dismantling the Earth's ecosystems, eliminating genes, species and biological traits at an alarming rate. This observation led to the question of how such loss of biological diversity will alter the functioning of ecosystems and their ability to provide society with the goods and services needed to prosper.

5,244 citations


Journal ArticleDOI
TL;DR: Increasing water storage through artificial recharge of excess surface water in aquifers by up to 3 km3 shows promise for coping with droughts and improving sustainability of groundwater resources in the Central Valley.
Abstract: Aquifer overexploitation could significantly impact crop production in the United States because 60% of irrigation relies on groundwater. Groundwater depletion in the irrigated High Plains and California Central Valley accounts for ∼50% of groundwater depletion in the United States since 1900. A newly developed High Plains recharge map shows that high recharge in the northern High Plains results in sustainable pumpage, whereas lower recharge in the central and southern High Plains has resulted in focused depletion of 330 km3 of fossil groundwater, mostly recharged during the past 13,000 y. Depletion is highly localized with about a third of depletion occurring in 4% of the High Plains land area. Extrapolation of the current depletion rate suggests that 35% of the southern High Plains will be unable to support irrigation within the next 30 y. Reducing irrigation withdrawals could extend the lifespan of the aquifer but would not result in sustainable management of this fossil groundwater. The Central Valley is a more dynamic, engineered system, with north/south diversions of surface water since the 1950s contributing to ∼7× higher recharge. However, these diversions are regulated because of impacts on endangered species. A newly developed Central Valley Hydrologic Model shows that groundwater depletion since the 1960s, totaling 80 km3, occurs mostly in the south (Tulare Basin) and primarily during droughts. Increasing water storage through artificial recharge of excess surface water in aquifers by up to 3 km3 shows promise for coping with droughts and improving sustainability of groundwater resources in the Central Valley.

994 citations


Journal ArticleDOI
TL;DR: The new data policy is revolutionizing the use of Landsat data, spurring the creation of robust standard products and new science and applications approaches, and promoting increased international collaboration to meet the Earth observing needs of the 21st century.

976 citations


Journal ArticleDOI
TL;DR: In this article, the authors developed a quantitative model for estimating the adsorbed gas estimate in the presence of moisture and thermal maturity of the gas-sorption ratio in shales.

974 citations


Journal ArticleDOI
13 Sep 2012-Nature
TL;DR: These findings suggest that tropical protected areas are often intimately linked ecologically to their surrounding habitats, and that a failure to stem broad-scale loss and degradation of such habitats could sharply increase the likelihood of serious biodiversity declines.
Abstract: The rapid disruption of tropical forests probably imperils global biodiversity more than any other contemporary phenomenon(1-3). With deforestation advancing quickly, protected areas are increasingly becoming final refuges for threatened species and natural ecosystem processes. However, many protected areas in the tropics are themselves vulnerable to human encroachment and other environmental stresses(4-9). As pressures mount, it is vital to know whether existing reserves can sustain their biodiversity. A critical constraint in addressing this question has been that data describing a broad array of biodiversity groups have been unavailable for a sufficiently large and representative sample of reserves. Here we present a uniquely comprehensive data set on changes over the past 20 to 30 years in 31 functional groups of species and 21 potential drivers of environmental change, for 60 protected areas stratified across the world's major tropical regions. Our analysis reveals great variation in reserve 'health': about half of all reserves have been effective or performed passably, but the rest are experiencing an erosion of biodiversity that is often alarmingly widespread taxonomically and functionally. Habitat disruption, hunting and forest-product exploitation were the strongest predictors of declining reserve health. Crucially, environmental changes immediately outside reserves seemed nearly as important as those inside in determining their ecological fate, with changes inside reserves strongly mirroring those occurring around them. These findings suggest that tropical protected areas are often intimately linked ecologically to their surrounding habitats, and that a failure to stem broad-scale loss and degradation of such habitats could sharply increase the likelihood of serious biodiversity declines.

962 citations


Journal ArticleDOI
TL;DR: Coupling free and open access to large data volumes with improved processing power will result in automated image pre-processing and land cover characterization methods that need to leverage high-performance computing capabilities in advancing the land cover monitoring discipline.

824 citations


Journal ArticleDOI
24 May 2012-Nature
TL;DR: In this paper, the authors compared phenology (the timing of recurring life history events) in observational studies and warming experiments spanning four continents and 1,634 plant species using a common measure of temperature sensitivity (change in days per degree Celsius).
Abstract: Warming experiments are increasingly relied on to estimate plant responses to global climate change. For experiments to provide meaningful predictions of future responses, they should reflect the empirical record of responses to temperature variability and recent warming, including advances in the timing of flowering and leafing. We compared phenology (the timing of recurring life history events) in observational studies and warming experiments spanning four continents and 1,634 plant species using a common measure of temperature sensitivity (change in days per degree Celsius). We show that warming experiments underpredict advances in the timing of flowering and leafing by 8.5-fold and 4.0-fold, respectively, compared with long-term observations. For species that were common to both study types, the experimental results did not match the observational data in sign or magnitude. The observational data also showed that species that flower earliest in the spring have the highest temperature sensitivities, but this trend was not reflected in the experimental data. These significant mismatches seem to be unrelated to the study length or to the degree of manipulated warming in experiments. The discrepancy between experiments and observations, however, could arise from complex interactions among multiple drivers in the observational data, or it could arise from remediable artefacts in the experiments that result in lower irradiance and drier soils, thus dampening the phenological responses to manipulated warming. Our results introduce uncertainty into ecosystem models that are informed solely by experiments and suggest that responses to climate change that are predicted using such models should be re-evaluated.

751 citations


Journal ArticleDOI
TL;DR: The Landsat Data Continuity Mission (LDCM) as mentioned in this paper is a successor to the Landsat data continuity mission (LDSM) that will collect, archive, and distribute the image data as part of the Earth Resources Observation and Science (EROS) archive.

738 citations


Journal ArticleDOI
TL;DR: In this paper, the authors provide field evidence of the existence, magnitude and formative processes of a sea-level-rise hotspot located in one of the world's most densely populated coastal areas encompassing Boston, Providence, New York City, Philadelphia, Baltimore and Virginia Beach.
Abstract: This study provides field evidence of the existence, magnitude and formative processes of a sea-level-rise hotspot located in one of the world’s most densely populated coastal areas encompassing Boston, Providence, New York City, Philadelphia, Baltimore and Norfolk Virginia Beach.

705 citations


Journal ArticleDOI
TL;DR: In this article, seasonal and annual constituent fluxes have been determined using consistent sampling and analytical methods at the pan-Arctic scale and consequently provide the best available estimates for constituent flux from land to the Arctic Ocean and surrounding seas.
Abstract: River inputs of nutrients and organic matter impact the biogeochemistry of arctic estuaries and the Arctic Ocean as a whole, yet there is considerable uncertainty about the magnitude of fluvial fluxes at the pan-Arctic scale. Samples from the six largest arctic rivers, with a combined watershed area of 11.3 × 106 km2, have revealed strong seasonal variations in constituent concentrations and fluxes within rivers as well as large differences among the rivers. Specifically, we investigate fluxes of dissolved organic carbon, dissolved organic nitrogen, total dissolved phosphorus, dissolved inorganic nitrogen, nitrate, and silica. This is the first time that seasonal and annual constituent fluxes have been determined using consistent sampling and analytical methods at the pan-Arctic scale and consequently provide the best available estimates for constituent flux from land to the Arctic Ocean and surrounding seas. Given the large inputs of river water to the relatively small Arctic Ocean and the dramatic impacts that climate change is having in the Arctic, it is particularly urgent that we establish the contemporary river fluxes so that we will be able to detect future changes and evaluate the impact of the changes on the biogeochemistry of the receiving coastal and ocean systems.

543 citations


Journal ArticleDOI
TL;DR: No clear pattern of how strongly PAHs were bound to differentBiochars was found based on the biochars' physicochemical properties, and total concentrations were below existing environmental quality standards for concentrations of PAhs in soils.
Abstract: Biochar soil amendment is advocated to mitigate climate change and improve soil fertility. A concern though, is that during biochar preparation PAHs and dioxins are likely formed. These contaminants can possibly be present in the biochar matrix and even bioavailable to exposed organisms. Here we quantify total and bioavailable PAHs and dioxins in a suite of over 50 biochars produced via slow pyrolysis between 250 and 900 °C, using various methods and biomass from tropical, boreal, and temperate areas. These slow pyrolysis biochars, which can be produced locally on farms with minimum resources, are also compared to biochar produced using the industrial methods of fast pyrolysis and gasification. Total concentrations were measured with a Soxhlet extraction and bioavailable concentrations were measured with polyoxymethylene passive samplers. Total PAH concentrations ranged from 0.07 μg g–1 to 3.27 μg g–1 for the slow pyrolysis biochars and were dependent on biomass source, pyrolysis temperature, and time. Wi...

Journal ArticleDOI
TL;DR: By quantifying the amount of oil at different locations (wellhead, ocean surface, and atmosphere), it is concluded that just over 2 million barrels of oil (after accounting for containment) and all of the released methane remained in the deep sea.
Abstract: The unprecedented nature of the Deepwater Horizon oil spill required the application of research methods to estimate the rate at which oil was escaping from the well in the deep sea, its disposition after it entered the ocean, and total reservoir depletion. Here, we review what advances were made in scientific understanding of quantification of flow rates during deep sea oil well blowouts. We assess the degree to which a consensus was reached on the flow rate of the well by comparing in situ observations of the leaking well with a time-dependent flow rate model derived from pressure readings taken after the Macondo well was shut in for the well integrity test. Model simulations also proved valuable for predicting the effect of partial deployment of the blowout preventer rams on flow rate. Taken together, the scientific analyses support flow rates in the range of ∼50,000–70,000 barrels/d, perhaps modestly decreasing over the duration of the oil spill, for a total release of ∼5.0 million barrels of oil, not accounting for BP's collection effort. By quantifying the amount of oil at different locations (wellhead, ocean surface, and atmosphere), we conclude that just over 2 million barrels of oil (after accounting for containment) and all of the released methane remained in the deep sea. By better understanding the fate of the hydrocarbons, the total discharge can be partitioned into separate components that pose threats to deep sea vs. coastal ecosystems, allowing responders in future events to scale their actions accordingly.

Journal ArticleDOI
TL;DR: The magnitude of regional and global desert-related environmental impacts is affected by these surface communities; here, the challenges for incorporating the consideration of these communities and their effects into the management of dryland resources are discussed.
Abstract: Drylands constitute the most extensive terrestrial biome, covering more than one-third of the Earth's continental surface. In these environments, stress limits animal and plant life, so life forms that can survive desiccation and then resume growth following subsequent wetting assume the foremost role in ecosystem processes. In this Review, we describe how these organisms assemble in unique soil- and rock-surface communities to form a thin veneer of mostly microbial biomass across hot and cold deserts. These communities mediate inputs and outputs of gases, nutrients and water from desert surfaces, as well as regulating weathering, soil stability, and hydrological and nutrient cycles. The magnitude of regional and global desert-related environmental impacts is affected by these surface communities; here, we also discuss the challenges for incorporating the consideration of these communities and their effects into the management of dryland resources.

Journal ArticleDOI
Roger C. Wiens1, Sylvestre Maurice2, Sylvestre Maurice3, B. L. Barraclough4, B. L. Barraclough1, Muriel Saccoccio5, Walter Barkley1, James F. Bell6, S. Bender4, S. Bender1, John D. Bernardin1, Diana L. Blaney7, Jennifer G. Blank8, Marc Bouyé2, Marc Bouyé3, Nathan T. Bridges9, Nathan K. Bultman1, Phillippe Caïs10, Robert C. Clanton1, Benton C. Clark11, Samuel M. Clegg1, Agnès Cousin2, Agnès Cousin3, David A. Cremers, Alain Cros3, Alain Cros2, Lauren DeFlores7, Dorothea Delapp1, Robert Dingler1, Claude d’Uston2, Claude d’Uston3, M. Darby Dyar12, Tom Elliott7, Don Enemark1, Cécile Fabre, Mike Flores1, Olivier Forni3, Olivier Forni2, Olivier Gasnault2, Olivier Gasnault3, Thomas Chatters Hale1, Charles C. Hays6, K. E. Herkenhoff13, Ed Kan7, L. E. Kirkland14, Driss Kouach2, Driss Kouach3, David Landis15, Yves Langevin16, Nina Lanza1, Nina Lanza17, Frank LaRocca18, Jérémie Lasue3, Jérémie Lasue2, Jérémie Lasue1, Joseph Latino1, Daniel Limonadi7, Chris Lindensmith7, Cynthia K. Little1, Nicolas Mangold19, Gérard Manhès20, Patrick Mauchien21, Christopher P. McKay8, Edward A. Miller7, Joe Mooney, Richard V. Morris, Leland Jean Morrison1, T. Nelson1, Horton E. Newsom17, Ann Ollila17, Melanie N. Ott18, L. Parès3, L. Parès2, R. Perez5, Franck Poitrasson2, Franck Poitrasson3, Cheryl Provost, Joseph W. Reiter7, Tom Roberts7, Frank Patrick Romero1, V. Sautter, Steven Salazar1, John J. Simmonds7, Ralph Stiglich1, S. A. Storms1, Nicolas Striebig2, Nicolas Striebig3, Jean Jacques Thocaven3, Jean Jacques Thocaven2, Tanner Trujillo1, Mike Ulibarri1, David T. Vaniman1, David T. Vaniman4, Noah Warner7, Rob Waterbury, Robert Whitaker1, James Witt1, Belinda Wong-Swanson 
TL;DR: The first laser-induced breakdown spectrometer (LIBS) was used on the Mars Science Laboratory (MSL) rover Curiosity for remote compositional information using the first LIBS on a planetary mission, and provided sample texture and morphology data using a remote micro-imager.
Abstract: The ChemCam instrument suite on the Mars Science Laboratory (MSL) rover Curiosity provides remote compositional information using the first laser-induced breakdown spectrometer (LIBS) on a planetary mission, and provides sample texture and morphology data using a remote micro-imager (RMI). Overall, ChemCam supports MSL with five capabilities: remote classification of rock and soil characteristics; quantitative elemental compositions including light elements like hydrogen and some elements to which LIBS is uniquely sensitive (e.g., Li, Be, Rb, Sr, Ba); remote removal of surface dust and depth profiling through surface coatings; context imaging; and passive spectroscopy over the 240–905 nm range. ChemCam is built in two sections: The mast unit, consisting of a laser, telescope, RMI, and associated electronics, resides on the rover’s mast, and is described in a companion paper. ChemCam’s body unit, which is mounted in the body of the rover, comprises an optical demultiplexer, three spectrometers, detectors, their coolers, and associated electronics and data handling logic. Additional instrument components include a 6 m optical fiber which transfers the LIBS light from the telescope to the body unit, and a set of onboard calibration targets. ChemCam was integrated and tested at Los Alamos National Laboratory where it also underwent LIBS calibration with 69 geological standards prior to integration with the rover. Post-integration testing used coordinated mast and instrument commands, including LIBS line scans on rock targets during system-level thermal-vacuum tests. In this paper we describe the body unit, optical fiber, and calibration targets, and the assembly, testing, and verification of the instrument prior to launch.

Journal ArticleDOI
TL;DR: In this article, a study showed that fungal-based food webs of grassland were more resistant to bouts of drought than those of intensively managed wheat, and retained more carbon and nitrogen in the soil.
Abstract: A study shows that soil food webs directly help mitigate the effects of drought on soil nutrients. The fungal-based food webs of grassland were more resistant to bouts of drought than the bacterial-based food webs of intensively managed wheat, and retained more carbon and nitrogen in the soil.

Journal ArticleDOI
11 May 2012-Science
TL;DR: Dawn's results confirm predictions that Vesta differentiated and support its identification as the parent body of the HEDs, and present the mineralogical characterization of Vesta, revealing that this asteroid underwent a complex magmatic evolution that led to a differentiated crust and mantle.
Abstract: The Dawn spacecraft targeted 4 Vesta, believed to be a remnant intact protoplanet from the earliest epoch of solar system formation, based on analyses of howardite-eucrite-diogenite (HED) meteorites that indicate a differentiated parent body. Dawn observations reveal a giant basin at Vesta's south pole, whose excavation was sufficient to produce Vesta-family asteroids (Vestoids) and HED meteorites. The spatially resolved mineralogy of the surface reflects the composition of the HED meteorites, confirming the formation of Vesta's crust by melting of a chondritic parent body. Vesta's mass, volume, and gravitational field are consistent with a core having an average radius of 107 to 113 kilometers, indicating sufficient internal melting to segregate iron. Dawn's results confirm predictions that Vesta differentiated and support its identification as the parent body of the HEDs.

Journal ArticleDOI
TL;DR: This paper reviewed and synthesized published studies of the effects of biotic disturbances on forest C cycling in the United States and Canada and concluded that such disturbances can have major impacts on forest carbon stocks and fluxes and can be large enough to affect regional carbon cycle.
Abstract: Forest insects and pathogens are major disturbance agents that have affected millions of hectares in North America in recent decades, implying significant impacts to the carbon (C) cycle. Here, we review and synthesize published studies of the effects of biotic disturbances on forest C cycling in the United States and Canada. Primary productivity in stands was reduced, sometimes considerably, immediately following insect or pathogen attack. After repeated growth reductions caused by some insects or pathogens or a single infestation by some bark beetle species, tree mortality occurred, altering productivity and decomposition. In the years following disturbance, primary productivity in some cases increased rapidly as a result of enhanced growth by surviving vegetation, and in other cases increased slowly because of lower forest regrowth. In the decades following tree mortality, decomposition increased as a result of the large amount of dead organic matter. Net ecosystem productivity decreased immediately following attack, with some studies reporting a switch to a C source to the atmosphere, and increased afterward as the forest regrew and dead organic matter decomposed. Large variability in C cycle responses arose from several factors, including type of insect or pathogen, time since disturbance, number of trees affected, and capacity of remaining vegetation to increase growth rates following outbreak. We identified significant knowledge gaps, including limited understanding of carbon cycle impacts among different biotic disturbance types (particularly pathogens), their impacts at landscape and regional scales, and limited capacity to predict disturbance events and their consequences for carbon cycling. We conclude that biotic disturbances can have major impacts on forest C stocks and fluxes and can be large enough to affect regional C cycling. However, additional research is needed to reduce the uncertainties associated with quantifying biotic disturbance effects on the North American C budget.

Journal ArticleDOI
TL;DR: New developments in SEM are described that are believed to constitute a third-generation generalization of the structural equation model as a causal graph, based on graph theoretic principles rather than analyses of matrices.
Abstract: Structural equation modeling (SEM) is increasingly being chosen by researchers as a framework for gaining scientific insights from the quantitative analyses of data. New ideas and methods emerging from the study of causality, influences from the field of graphical modeling, and advances in statistics are expanding the rigor, capability, and even purpose of SEM. Guidelines for implementing the expanded capabilities of SEM are currently lacking. In this paper we describe new developments in SEM that we believe constitute a third-generation of the methodology. Most characteristic of this new approach is the generalization of the structural equation model as a causal graph. In this generalization, analyses are based on graph theoretic principles rather than analyses of matrices. Also, new devices such as metamodels and causal diagrams, as well as an increased emphasis on queries and probabilistic reasoning, are now included. Estimation under a graph theory framework permits the use of Bayesian or likelihood methods. The guidelines presented start from a declaration of the goals of the analysis. We then discuss how theory frames the modeling process, requirements for causal interpretation, model specification choices, selection of estimation method, model evaluation options, and use of queries, both to summarize retrospective results and for prospective analyses. The illustrative example presented involves monitoring data from wetlands on Mount Desert Island, home of Acadia National Park. Our presentation walks through the decision process involved in developing and evaluating models, as well as drawing inferences from the resulting prediction equations. In addition to evaluating hypotheses about the connections between human activities and biotic responses, we illustrate how the structural equation (SE) model can be queried to understand how interventions might take advantage of an environmental threshold to limit Typha invasions. The guidelines presented provide for an updated definition of the SEM process that subsumes the historical matrix approach under a graph-theory implementation. The implementation is also designed to permit complex specifications and to be compatible with various estimation methods. Finally, they are meant to foster the use of probabilistic reasoning in both retrospective and prospective considerations of the quantitative implications of the results.

Journal ArticleDOI
TL;DR: In this paper, the role of water in the generation of magmas in the mantle wedge, the factors that allow melting to occur, and the plate tectonic variables controlling the location of arc volcanoes worldwide.
Abstract: Water is a key ingredient in the generation of magmas in subduction zones. This review focuses on the role of water in the generation of magmas in the mantle wedge, the factors that allow melting to occur, and the plate tectonic variables controlling the location of arc volcanoes worldwide. Water also influences chemical differentiation that occurs when magmas cool and crystallize in Earth’s continental crust. The source of H2O for arc magma generation is hydrous minerals that are carried into Earth by the subducting slab. These minerals dehydrate, releasing their bound H2O into overlying hotter, shallower mantle where melting begins and continues as buoyant hydrous magmas ascend and encounter increasingly hotter surroundings. This process is controlled by plate tectonic variables that ultimately influence the location of the active volcanic arc above subduction zones. Water also modifies the thermodynamic properties of melts, leading to the unique chemical composition of arc volcanic rocks and Earth’s continental crust.

Journal ArticleDOI
TL;DR: In this paper, a multispectral expert system used a neural network approach to provide Rapid Response thickness class maps using a spectral library approach based on the shape and depth of near infrared spectral absorption features.

Journal ArticleDOI
TL;DR: An earthquake detection procedure that relies solely on Twitter data is presented and evaluated, finding that the detections are generally caused by widely felt events that are of more immediate interest than those with no human impact.
Abstract: The U.S. Geological Survey (USGS) is investigating how the social networking site Twitter, a popular service for sending and receiving short, public text messages, can augment USGS earthquake response products and the delivery of hazard information. Rapid detection and qualitative assessment of shaking events are possible because people begin sending public Twitter messages (tweets) with in tens of seconds after feeling shaking. Here we present and evaluate an earthquake detection procedure that relies solely on Twitter data. A tweet-frequency time series constructed from tweets containing the word “earthquake” clearly shows large peaks correlated with the origin times of widely felt events. To identify possible earthquakes, we use a short-term-average, long-term-average algorithm. When tuned to a moderate sensitivity, the detector finds 48 globally-distributed earthquakes with only two false triggers in five months of data. The number of detections is small compared to the 5,175 earthquakes in the USGS global earthquake catalog for the same five-month time period, and no accurate location or magnitude can be assigned based on tweet data alone. However, Twitter earthquake detections are not without merit. The detections are generally caused by widely felt events that are of more immediate interest than those with no human impact. The detections are also fast; about 75% occur within two minutes of the origin time. This is considerably faster than seismographic detections in poorly instrumented regions of the world. The tweets triggering the detections also provided very short first-impression narratives from people who experienced the shaking.


Journal ArticleDOI
TL;DR: Functional gene abundance is a valuable index that integrates recent environmental history and recent process activity, and therefore is a good predictor of potential rates of nitrification and denitrification across terrestrial ecosystems.
Abstract: Summary Nitrification and denitrification processes are crucial to plant nutrient availability, eutrophication and greenhouse gas production both locally and globally. Unravelling the major environmental predictors for nitrification and denitrification is thus pivotal in order to understand and model environmental nitrogen (N) cycling. Here, we sampled five plant community types characteristic of interior Alaska, including black spruce, bog birch, tussock grass and two fens. We assessed abundance of functional genes affiliated with nitrification (bacterial and archaeal amoA) and denitrification (nirK/S and nosZ) using qPCR, soil characteristics, potential nitrification and denitrifica- tion rates (PNR and PDR) and gross mineralization rates. The main chemical and biological predictors for PNR and PDR were assigned through path analysis. The potential N cycling rates varied dramatically between sites, from some of the highest (in fens) to some of the lowest (in black spruce) measured glo- bally. Based on path analysis, functional gene abun- dances were the most important variables to predict potential rates. PNR was best explained by bacterial amoA gene abundance followed by ammonium content, whereas PDR was best explained directly by nosZ gene abundance and indirectly by nirK/S gene abundance and nitrate. Hence, functional gene abun- dance is a valuable index that integrates recent envi- ronmental history and recent process activity, and therefore is a good predictor of potential rates. The results of this study contribute to our understanding of the relative importance of different biological and chemical factors in driving the potential for nitrifica- tion and denitrification across terrestrial ecosystems.

Journal ArticleDOI
TL;DR: In this paper, the relationship between dissolved organic carbon (DOC) concentration and chromophoric dissolved organic matter (CDOM) parameters was measured over a range of discharge in 30 U.S. rivers.
Abstract: [1] Dissolved organic carbon (DOC) concentration and chromophoric dissolved organic matter (CDOM) parameters were measured over a range of discharge in 30 U.S. rivers, covering a diverse assortment of fluvial ecosystems in terms of watershed size and landscape drained. Relationships between CDOM absorption at a range of wavelengths (a254, a350, a440) and DOC in the 30 watersheds were found to correlate strongly and positively for the majority of U.S. rivers. However, four rivers (Colorado, Colombia, Rio Grande and St. Lawrence) exhibited statistically weak relationships between CDOM absorption and DOC. These four rivers are atypical, as they either drain from the Great Lakes or experience significant impoundment of water within their watersheds, and they exhibited values for dissolved organic matter (DOM) parameters indicative of autochthonous or anthropogenic sources or photochemically degraded allochthonous DOM and thus a decoupling between CDOM and DOC. CDOM quality parameters in the 30 rivers were found to be strongly correlated to DOM compositional metrics derived via XAD fractionation, highlighting the potential for examining DOM biochemical quality from CDOM measurements. This study establishes the ability to derive DOC concentration from CDOM absorption for the majority of U.S. rivers, describes characteristics of riverine systems where such an approach is not valid, and emphasizes the possibility of examining DOM composition and thus biogeochemical function via CDOM parameters. Therefore, the usefulness of CDOM measurements, both laboratory-based analyses and in situ instrumentation, for improving spatial and temporal resolution of DOC fluxes and DOM dynamics in future studies is considerable in a range of biogeochemical studies.

Journal ArticleDOI
TL;DR: In this article, the authors provide a critical review of maxent as applied to species distribution modelling and discuss how it can lead to inferential errors, and demonstrate that maxent produces a number of poorly defined indices that are not directly related to the actual parameter of interest.
Abstract: Summary 1. Understanding the factors affecting species occurrence is a pre-eminent focus of applied ecological research. However, direct information about species occurrence is lacking for many species. Instead, researchers sometimes have to rely on so-called presence-only data (i.e. when no direct information about absences is available), which often results from opportunistic, unstructured sampling. maxent is a widely used software program designed to model and map species distribution using presence-only data. 2. We provide a critical review of maxent as applied to species distribution modelling and discuss how it can lead to inferential errors. A chief concern is that maxent produces a number of poorly defined indices that are not directly related to the actual parameter of interest – the probability of occurrence (ψ). This focus on an index was motivated by the belief that it is not possible to estimate ψ from presence-only data; however, we demonstrate that ψ is identifiable using conventional likelihood methods under the assumptions of random sampling and constant probability of species detection. 3. The model is implemented in a convenient r package which we use to apply the model to simulated data and data from the North American Breeding Bird Survey. We demonstrate that maxent produces extreme under-predictions when compared to estimates produced by logistic regression which uses the full (presence/absence) data set. We note that maxent predictions are extremely sensitive to specification of the background prevalence, which is not objectively estimated using the maxent method. 4. As with maxent, formal model-based inference requires a random sample of presence locations. Many presence-only data sets, such as those based on museum records and herbarium collections, may not satisfy this assumption. However, when sampling is random, we believe that inference should be based on formal methods that facilitate inference about interpretable ecological quantities instead of vaguely defined indices.

Journal ArticleDOI
TL;DR: A conceptual framework is proposed that organises this diversity of non-trophic interactions observed in nature into three main functional classes defined by how they modify specific parameters in a dynamic food web model and offers a new perspective on tackling ecological complexity.
Abstract: Organisms eating each other are only one of many types of well documented and important interactions among species. Other such types include habitat modification, predator interference and facilitation. However, ecological network research has been typically limited to either pure food webs or to networks of only a few (<3) interaction types. The great diversity of non-trophic interactions observed in nature has been poorly addressed by ecologists and largely excluded from network theory. Herein, we propose a conceptual framework that organises this diversity into three main functional classes defined by how they modify specific parameters in a dynamic food web model. This approach provides a path forward for incorporating non-trophic interactions in traditional food web models and offers a new perspective on tackling ecological complexity that should stimulate both theoretical and empirical approaches to understanding the patterns and dynamics of diverse species interactions in nature.

Journal ArticleDOI
TL;DR: The U.S. Geological Survey (USGS) Landsat archive contains nearly three million Landsat images and all USGS Landsat data are available at no cost via the Internet as mentioned in this paper.

Journal ArticleDOI
TL;DR: In this paper, field observations and numerical simulations indicate that the 6-to-30-km wide mangrove forest along the Gulf Coast of South Florida effectively attenuated storm surges from a Category 3 hurricane, Wilma, and protected the inland wetland by reducing an inundation area of 1800 km 2 and restricting surge inundation inside the mangroves zone.
Abstract: Field observations and numerical simulations indicate that the 6-to-30-km-wide mangrove forest along the Gulf Coast of South Florida effectively attenuated storm surges from a Category 3 hurricane, Wilma, and protected the inland wetland by reducing an inundation area of 1800 km 2 and restricting surge inundation inside the mangrove zone. The surge amplitude decreases at a rate of 40e50 cm/km across the mangrove forest and at a rate of 20 cm/km across the areas with a mixture of mangrove islands with open water. In contrast, the amplitudes of storm surges at the front of the mangrove zone increase by about 10e30% because of the “blockage” of mangroves to surge water, which can cause greater impacts on structures at the front of mangroves than the case without mangroves. The mangrove forest can also protect the wetlands behind the mangrove zone against surge inundation from a Category 5 hurricane with a fast forward speed of 11.2 m/s (25 mph). However, the forest cannot fully attenuate storm surges from a Category 5 hurricane with a slow forward speed of 2.2 m/s (5 mph) and reduced surges can still affect the wetlands behind the mangrove zone. The effects of widths of mangrove zones on reducing surge amplitudes are nonlinear with large reduction rates (15e30%) for initial width increments and small rates (<5%) for subsequent width increments.

Journal ArticleDOI
TL;DR: Roger Powell documented his own use of space for 65 days, obtaining complete data on where he went, what he did, and how much energy and money he expended and gained in each place, providing insight into what a home range is and how ecologists should approach quantifying other animals' home ranges.
Abstract: “Home range” is a standard concept in animal ecology and behavior but few people try to understand what home ranges mean to the animals that have them and often assume that a home-range estimate, quantified using some method, is the home range. This leads to 2 problems. First, researchers put much energy into discerning and using the “best” methods for estimating home ranges while no one understands, really, what a home range is. Second, maps delineating home-range estimates may have little connection with what home ranges are and what they mean to the animals that have them. To gain insight into these problems, Roger Powell (hereafter, Roger) documented his own use of space for 65 days, obtaining complete data on where he went, what he did, and how much energy and money he expended and gained in each place. Roger's use of space is consistent with how other mammals use space and, therefore, examination of his data provides insight into what a home range is and how ecologists should approach quantifying other animals' home ranges. We present estimates of Roger's home range in 5 different metrics, or currencies, that provide important and different insights. Home-range estimators that combine different types of information to estimate the spatial distribution and qualities of resources that structure animal behavior (i.e., fitness surfaces) will probably provide the most insight into animals' home ranges. To make reasonable estimates of home ranges, researchers must collect data on habitat, resources, and other attributes of the landscape, so that they can understand basic behaviors of animals and understand how animals may view their environment. We propose that the best concept of a home range is that part of an animal's cognitive map of its environment that it chooses to keep updated.

Journal ArticleDOI
TL;DR: Variation in fish attraction was driven by biological characteristics of the fish that were studied, whereas variation in fish passage was related to fishway type, slope and elevation change.
Abstract: Attraction and passage efficiency were reviewed and compared from 19 monitoring studies that produced data for evaluations of pool‐and‐weir, Denil, vertical‐slot and nature‐like fishways. Data from 26 species of anadromous and potamodromous fishes from six countries were separated by year and taxonomic family into a matrix with 101 records. Attraction performance was highly variable for the following fishway structures: pool‐and‐weir (attraction range = 29–100%, mean = 77%, median = 81%), vertical‐slot (attraction range = 0–100%, mean = 63%, median = 80%), Denil (attraction range = 21–100%, mean = 61%, median = 57%) and nature‐like (attraction range = 0–100%, mean = 48%, median = 50%). Mean passage efficiency was inversely related to mean attraction efficiency by fishway structure type, with the highest passage for nature‐like fishways (range = 0–100%, mean = 70%, median = 86%), followed by Denil (range = 0–97%, mean = 51%, median = 38%), vertical‐slot (range = 0–100%, mean = 45%, median = 43%) and pool‐and‐weir (range = 0–100%, mean = 40%, median = 34%). Principal components analysis and logistic regression modelling indicated that variation in fish attraction was driven by biological characteristics of the fish that were studied, whereas variation in fish passage was related to fishway type, slope and elevation change. This meta‐analysis revealed that the species of fish monitored and structural design of the fishways have strong implications for both attraction and passage performance, and in most cases, existing data are not sufficient to support design recommendations. Many more fishway evaluations are needed over a range of species, fishway types and configurations to characterize, to optimize and to design new fishways. Furthermore, these studies must be performed in a consistent manner to identify the relative contributions of fish attraction and passage to overall fishway performance at each site.