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Showing papers by "Universidade Federal de Viçosa published in 2019"


Journal ArticleDOI
Danaë M. A. Rozendaal, Frans Bongers1, T. Mitchell Aide2, Esteban Álvarez-Dávila, Nataly Ascarrunz, Patricia Balvanera3, Justin M. Becknell4, Tony Vizcarra Bentos5, Pedro H. S. Brancalion6, George A. L. Cabral7, Sofia Calvo-Rodriguez8, Jérôme Chave9, Ricardo Gomes César6, Robin L. Chazdon10, Robin L. Chazdon11, Robin L. Chazdon12, Richard Condit13, Jorn S. Dallinga1, Jarcilene S. Almeida-Cortez7, Ben H. J. de Jong, Alexandre Adalardo de Oliveira6, Julie S. Denslow14, Daisy H. Dent15, Daisy H. Dent13, Saara J. DeWalt16, Juan Manuel Dupuy, Sandra M. Durán8, Lo c Paul Dutrieux1, Lo c Paul Dutrieux17, Mário M. Espírito-Santo, María C. Fandiño, G. Wilson Fernandes18, Bryan Finegan19, Hernando García20, Noel Gonzalez, Vanessa Granda Moser, Jefferson S. Hall13, José Luis Hernández-Stefanoni, Stephen P. Hubbell13, Catarina C. Jakovac21, Catarina C. Jakovac5, Catarina C. Jakovac12, Alma Johanna Hernández20, André Braga Junqueira12, André Braga Junqueira1, André Braga Junqueira21, Deborah K. Kennard22, Denis Larpin, Susan G. Letcher23, Juan Carlos Licona, Edwin Lebrija-Trejos24, Erika Marin-Spiotta25, Miguel Martínez-Ramos3, Paulo Eduardo dos Santos Massoca5, Jorge A. Meave3, Rita C. G. Mesquita5, Francisco Mora3, Sandra Cristina Müller26, Rodrigo Muñoz3, Silvio Nolasco de Oliveira Neto27, Natalia Norden20, Yule Roberta Ferreira Nunes, Susana Ochoa-Gaona, Edgar Ortiz-Malavassi28, Rebecca Ostertag, Marielos Peña-Claros1, Eduardo A. Pérez-García3, Daniel Piotto, Jennifer S. Powers29, José Reinaldo Aguilar-Cano20, Susana Rodríguez-Buriticá20, Jorge Rodríguez-Velázquez3, Marco Antonio Romero-Romero3, Jorge Ruiz30, Jorge Ruiz31, Arturo Sanchez-Azofeifa8, Arlete Silva de Almeida32, Whendee L. Silver33, Naomi B. Schwartz34, William Wayt Thomas35, Marisol Toledo, Ma ia Uríarte34, Everardo Valadares de Sá Barreto Sampaio7, Michiel van Breugel13, Michiel van Breugel36, Michiel van Breugel37, Hans van der Wal38, Sebastião Venâncio Martins27, Maria das Dores Magalhães Veloso, Henricus Franciscus M. Vester39, Alberto Vicentini5, Ima Célia Guimarães Vieira32, Pedro Manuel Villa27, G. Bruce Williamson5, G. Bruce Williamson40, Kátia Janaina Zanini26, Jess K. Zimmerman41, Lourens Poorter1 
TL;DR: This work assesses how tree species richness and composition recover during secondary succession across gradients in environmental conditions and anthropogenic disturbance in an unprecedented multisite analysis for the Neotropics.
Abstract: Old-growth tropical forests harbor an immense diversity of tree species but are rapidly being cleared, while secondary forests that regrow on abandoned agricultural lands increase in extent. We assess how tree species richness and composition recover during secondary succession across gradients in environmental conditions and anthropogenic disturbance in an unprecedented multisite analysis for the Neotropics. Secondary forests recover remarkably fast in species richness but slowly in species composition. Secondary forests take a median time of five decades to recover the species richness of old-growth forest (80% recovery after 20 years) based on rarefaction analysis. Full recovery of species composition takes centuries (only 34% recovery after 20 years). A dual strategy that maintains both old-growth forests and species-rich secondary forests is therefore crucial for biodiversity conservation in human-modified tropical landscapes.

273 citations


Journal ArticleDOI
Gaya K. Amarasinghe1, María A. Ayllón2, Yīmíng Bào3, Christopher F. Basler4, Sina Bavari5, Kim R. Blasdell6, Thomas Briese7, Paul Brown, Alexander Bukreyev8, Anne Balkema-Buschmann9, Ursula J. Buchholz10, Camila Chabi-Jesus11, Kartik Chandran12, Chiara Chiapponi, Ian Crozier10, Rik L. de Swart13, Ralf G. Dietzgen14, Olga Dolnik15, Jan Felix Drexler16, Ralf Dürrwald17, William G. Dundon18, W. Paul Duprex19, John M. Dye5, Andrew J. Easton20, Anthony R. Fooks, Pierre Formenty21, Ron A. M. Fouchier13, Juliana Freitas-Astúa22, Anthony Griffiths23, Roger Hewson24, Masayuki Horie25, Timothy H. Hyndman26, Dàohóng Jiāng27, E. W. Kitajima28, Gary P. Kobinger29, Hideki Kondō30, Gael Kurath31, Ivan V. Kuzmin32, Robert A. Lamb33, Antonio Lavazza, Benhur Lee34, Davide Lelli, Eric M. Leroy35, Jiànróng Lǐ36, Piet Maes37, Shin-Yi Lee Marzano38, Ana Moreno, Elke Mühlberger23, Sergey V. Netesov39, Norbert Nowotny40, Norbert Nowotny41, Are Nylund42, Arnfinn Lodden Økland42, Gustavo Palacios5, Bernadett Pályi, Janusz T. Paweska, Susan Payne43, Alice Prosperi, Pedro Luis Ramos-González11, Bertus K. Rima44, Paul A. Rota45, Dennis Rubbenstroth9, Mǎng Shī46, Peter Simmonds47, Sophie J. Smither48, Enrica Sozzi, Kirsten Spann49, Mark D. Stenglein50, David M. Stone, Ayato Takada51, Robert B. Tesh8, Keizō Tomonaga25, Noël Tordo52, Jonathan S. Towner45, Bernadette G. van den Hoogen13, Nikos Vasilakis8, Victoria Wahl, Peter J. Walker14, Lin-Fa Wang53, Anna E. Whitfield54, John V. Williams19, F. Murilo Zerbini55, Tāo Zhāng3, Yong-Zhen Zhang56, Yong-Zhen Zhang57, Jens H. Kuhn10 
Washington University in St. Louis1, Technical University of Madrid2, Beijing Institute of Genomics3, Georgia State University4, United States Army Medical Research Institute of Infectious Diseases5, Commonwealth Scientific and Industrial Research Organisation6, Columbia University7, University of Texas Medical Branch8, Friedrich Loeffler Institute9, National Institutes of Health10, Instituto Biológico11, Albert Einstein College of Medicine12, Erasmus University Rotterdam13, University of Queensland14, University of Marburg15, Humboldt University of Berlin16, Robert Koch Institute17, International Atomic Energy Agency18, University of Pittsburgh19, University of Warwick20, World Health Organization21, Empresa Brasileira de Pesquisa Agropecuária22, Boston University23, Public Health England24, Kyoto University25, Murdoch University26, Huazhong Agricultural University27, University of São Paulo28, Laval University29, Okayama University30, United States Geological Survey31, United States Department of Agriculture32, Northwestern University33, Icahn School of Medicine at Mount Sinai34, Institut de recherche pour le développement35, Ohio State University36, Katholieke Universiteit Leuven37, South Dakota State University38, Novosibirsk State University39, University of Medicine and Health Sciences40, University of Veterinary Medicine Vienna41, University of Bergen42, Texas A&M University43, Queen's University Belfast44, Centers for Disease Control and Prevention45, University of Sydney46, University of Oxford47, Defence Science and Technology Laboratory48, Queensland University of Technology49, Colorado State University50, Hokkaido University51, Pasteur Institute52, National University of Singapore53, North Carolina State University54, Universidade Federal de Viçosa55, Chinese Center for Disease Control and Prevention56, Fudan University57
TL;DR: The updated taxonomy of the order Mononegavirales is presented as now accepted by the International Committee on Taxonomy of Viruses (ICTV).
Abstract: In February 2019, following the annual taxon ratification vote, the order Mononegavirales was amended by the addition of four new subfamilies and 12 new genera and the creation of 28 novel species. This article presents the updated taxonomy of the order Mononegavirales as now accepted by the International Committee on Taxonomy of Viruses (ICTV).

238 citations


Journal ArticleDOI
Abulikemu Abudurexiti1, Scott Adkins2, Daniela Alioto3, S. V. Alkhovsky, Tatjana Avšič-Županc4, Matthew J. Ballinger5, Dennis A. Bente6, Martin Beer7, Eric Bergeron1, Carol D. Blair8, Thomas Briese9, Michael J. Buchmeier10, Felicity J. Burt11, Charles H. Calisher8, Chénchén Cháng12, Rémi N. Charrel13, Il-Ryong Choi14, J. Christopher S. Clegg, Juan Carlos de la Torre15, Xavier de Lamballerie13, Fēi Dèng, Francesco Di Serio, Michele Digiaro, Michael A. Drebot16, Xiǎoméi Duàn12, Hideki Ebihara17, Toufic Elbeaino, Koray Ergünay18, Charles F. Fulhorst6, Aura R. Garrison19, George Fú Gāo20, Jean-Paul Gonzalez21, Martin H. Groschup7, Stephan Günther22, Anne Lise Haenni23, Roy A. Hall24, Jussi Hepojoki25, Jussi Hepojoki26, Roger Hewson27, Zhìhóng Hú, Holly R. Hughes1, Miranda Gilda Jonson28, Sandra Junglen29, Boris Klempa30, Jonas Klingström31, Chūn Kòu12, Lies Laenen32, Amy J. Lambert1, Stanley A. Langevin33, Dan Liu34, Igor S. Lukashevich35, Tāo Luò1, Chuánwèi Lǚ, Piet Maes32, William Marciel de Souza36, Marco Marklewitz29, Giovanni P. Martelli37, Keita Matsuno38, Nicole Mielke-Ehret39, Maria Minutolo3, Ali Mirazimi40, Abulimiti Moming12, Hans Peter Mühlbach39, Rayapati A. Naidu41, Beatriz Navarro, Márcio Roberto Teixeira Nunes, Gustavo Palacios19, Anna Papa42, Alex Pauvolid-Corrêa43, Janusz T. Paweska, Jié Qiáo, Sheli R. Radoshitzky19, R. O. Resende44, Víctor Romanowski45, Amadou A. Sall46, Maria S. Salvato47, Takahide Sasaya48, Shū Shěn, Xiǎohóng Shí49, Yukio Shirako50, Peter Simmonds51, Manuela Sironi, Jin Won Song52, Jessica R. Spengler1, Mark D. Stenglein8, Zhèngyuán Sū, Sùróng Sūn12, Shuāng Táng, Massimo Turina53, Bó Wáng, Chéng Wáng1, Huálín Wáng, Jūn Wáng, Taiyun Wei54, Anna E. Whitfield55, F. Murilo Zerbini56, Jìngyuàn Zhāng12, Lěi Zhāng, Yànfāng Zhāng, Yong-Zhen Zhang57, Yong-Zhen Zhang20, Yújiāng Zhāng1, Xueping Zhou, Lìyǐng Zhū, Jens H. Kuhn58 
Centers for Disease Control and Prevention1, United States Department of Agriculture2, University of Naples Federico II3, University of Ljubljana4, Mississippi State University5, University of Texas Medical Branch6, Friedrich Loeffler Institute7, Colorado State University8, Columbia University9, University of California, Irvine10, University of the Free State11, Xinjiang University12, Aix-Marseille University13, International Rice Research Institute14, Scripps Research Institute15, Public Health Agency of Canada16, Mayo Clinic17, Hacettepe University18, United States Army Medical Research Institute of Infectious Diseases19, Chinese Center for Disease Control and Prevention20, Kansas State University21, Bernhard Nocht Institute for Tropical Medicine22, Paris Diderot University23, University of Queensland24, University of Helsinki25, University of Zurich26, Public Health England27, Seoul National University28, Charité29, Slovak Academy of Sciences30, Karolinska Institutet31, Katholieke Universiteit Leuven32, University of Washington33, Wuhan University of Science and Technology34, University of Louisville35, University of São Paulo36, University of Bari37, Hokkaido University38, University of Hamburg39, Public Health Agency of Sweden40, Washington State University41, Aristotle University of Thessaloniki42, Oswaldo Cruz Foundation43, University of Brasília44, National University of La Plata45, Pasteur Institute46, University of Maryland, Baltimore47, National Agriculture and Food Research Organization48, University of Glasgow49, University of Tokyo50, University of Oxford51, Korea University52, National Research Council53, Fujian Agriculture and Forestry University54, North Carolina State University55, Universidade Federal de Viçosa56, Fudan University57, National Institutes of Health58
TL;DR: The updated taxonomy of the order Bunyavirales now accepted by the International Committee on Taxonomy of Viruses (ICTV) is presented.
Abstract: In February 2019, following the annual taxon ratification vote, the order Bunyavirales was amended by creation of two new families, four new subfamilies, 11 new genera and 77 new species, merging of two species, and deletion of one species. This article presents the updated taxonomy of the order Bunyavirales now accepted by the International Committee on Taxonomy of Viruses (ICTV).

237 citations


Journal ArticleDOI
TL;DR: The results demonstrate that rapid detoxification of potentially detrimental amino acids such as Lys is a priority during the initial stress recovery period and support a tight relationship between amino acid metabolism and stress responses.
Abstract: Plant responses to abiotic stress include various modifications in amino acid metabolism. By using a hydroponic culture system, we systematically investigate modification in amino acid profiles and the proteome of Arabidopsis thaliana leaves during initial recovery from low water potential or high salinity. Both treatments elicited oxidative stress leading to a biphasic stress response during recovery. Degradation of highly abundant proteins such as subunits of photosystems and ribosomes contributed to an accumulation of free amino acids. Catabolic pathways for several low abundant amino acids were induced indicating their usage as an alternative respiratory substrate to compensate for the decreased photosynthesis. Our results demonstrate that rapid detoxification of potentially detrimental amino acids such as Lys is a priority during the initial stress recovery period. The content of Pro, which acts as a compatible osmolyte during stress, was adjusted by balancing its synthesis and catabolism both of which were induced both during and after stress treatments. The production of amino acid derived secondary metabolites was up-regulated specifically during the recovery period, and our dataset also indicates increased synthesis rates of the precursor amino acids. Overall, our results support a tight relationship between amino acid metabolism and stress responses.

215 citations


Journal ArticleDOI
15 Apr 2019-Geoderma
TL;DR: In this paper, the authors applied a methodological framework to optimize the prediction of soil organic carbon (SOC) stocks for the entire Brazilian territory and determine how the environmental heterogeneity of Brazil influences the SOC stocks distribution.

195 citations


Journal ArticleDOI
TL;DR: An holistic approach across all ruminant livestock industries and long-term commitment is required for control of paratuberculosis.
Abstract: Paratuberculosis, a chronic disease affecting ruminant livestock, is caused by Mycobacterium avium subsp. paratuberculosis (MAP). It has direct and indirect economic costs, impacts animal welfare and arouses public health concerns. In a survey of 48 countries we found paratuberculosis to be very common in livestock. In about half the countries more than 20% of herds and flocks were infected with MAP. Most countries had large ruminant populations (millions), several types of farmed ruminants, multiple husbandry systems and tens of thousands of individual farms, creating challenges for disease control. In addition, numerous species of free-living wildlife were infected. Paratuberculosis was notifiable in most countries, but formal control programs were present in only 22 countries. Generally, these were the more highly developed countries with advanced veterinary services. Of the countries without a formal control program for paratuberculosis, 76% were in South and Central America, Asia and Africa while 20% were in Europe. Control programs were justified most commonly on animal health grounds, but protecting market access and public health were other factors. Prevalence reduction was the major objective in most countries, but Norway and Sweden aimed to eradicate the disease, so surveillance and response were their major objectives. Government funding was involved in about two thirds of countries, but operations tended to be funded by farmers and their organizations and not by government alone. The majority of countries (60%) had voluntary control programs. Generally, programs were supported by incentives for joining, financial compensation and/or penalties for non-participation. Performance indicators, structure, leadership, practices and tools used in control programs are also presented. Securing funding for long-term control activities was a widespread problem. Control programs were reported to be successful in 16 (73%) of the 22 countries. Recommendations are made for future control programs, including a primary goal of establishing an international code for paratuberculosis, leading to universal acknowledgment of the principles and methods of control in relation to endemic and transboundary disease. An holistic approach across all ruminant livestock industries and long-term commitment is required for control of paratuberculosis.

176 citations


Journal ArticleDOI
TL;DR: In this article, the authors evaluated the performance of artificial neural network (ANN) and support vector machine (SVM) models for the estimation of daily ETo across the entirety of Brazil using measured data on temperature and relative humidity or only temperature.

171 citations


Journal ArticleDOI
Rungtiwa Phookamsak, Kevin D. Hyde, Rajesh Jeewon1, D. Jayarama Bhat, E. B. Gareth Jones2, E. B. Gareth Jones3, Sajeewa S. N. Maharachchikumbura4, Olivier Raspé5, Samantha C. Karunarathna6, Samantha C. Karunarathna7, Dhanushka N. Wanasinghe, Sinang Hongsanan8, Sinang Hongsanan9, Mingkwan Doilom, Danushka S. Tennakoon, A. R. Machado10, A. L. Firmino11, Aniket Ghosh12, Anuruddha Karunarathna, Armin Mešić, Arun Kumar Dutta13, Benjarong Thongbai, B. Devadatha14, Chada Norphanphoun, Chanokned Senwanna9, Chanokned Senwanna2, De-Ping Wei, Dhandevi Pem9, Dhandevi Pem8, Frank K. Ackah15, Gen-Nuo Wang16, Hong-Bo Jiang9, Hong-Bo Jiang7, Hugo Madrid17, Hyang Burm Lee18, Ishani D. Goonasekara9, Ishani D. Goonasekara7, Ishara S. Manawasinghe9, I. Kusan, Josep Cano, Josepa Gené, Junfu Li7, Junfu Li9, Kanad Das19, Krishnendu Acharya13, K. N. Anil Raj20, K. P. Deepna Latha20, K. W. Thilini Chethana9, Mao-Qiang He21, Margarita Dueñas22, M. Jadan, María P. Martín22, Milan C. Samarakoon2, Milan C. Samarakoon9, Monika C. Dayarathne9, Monika C. Dayarathne7, Mubashar Raza21, Myung Soo Park23, M. Teresa Telleria22, Napalai Chaiwan9, Napalai Chaiwan7, Neven Matočec, Nimali I. de Silva, Olinto Liparini Pereira24, Paras Nath Singh25, Patinjareveettil Manimohan20, Priyanka Uniyal12, Qiu-Ju Shang9, Rajendra P. Bhatt12, Rekhani H. Perera9, Renato Lúcio Mendes Alvarenga10, Sandra Nogal-Prata22, Sanjay K. Singh25, Santhiti Vadthanarat2, Seung-Yoon Oh23, Shi-Ke Huang, Shiwali Rana25, Sirinapa Konta9, Sirinapa Konta7, Soumitra Paloi13, Subashini C. Jayasiri9, Subashini C. Jayasiri7, Sun Jeong Jeon18, Tahir Mehmood12, Tatiana Baptista Gibertoni10, Thuong T. T. Nguyen18, Upendra Singh12, Vinodhini Thiyagaraja, V. Venkateswara Sarma14, Wei Dong, Xian-Dong Yu16, Yong-Zhong Lu26, Yong-Zhong Lu9, Young Woon Lim23, Yun Chen, Zdenko Tkalčec, Zhi-Feng Zhang21, Zong-Long Luo9, Zong-Long Luo27, Dinushani A. Daranagama28, Kasun M. Thambugala29, Saowaluck Tibpromma, Erio Camporesi, Timur S. Bulgakov, Asha J. Dissanayake9, Indunil C. Senanayake8, Indunil C. Senanayake9, Dong-Qin Dai, Li-Zhou Tang, Sehroon Khan7, Sehroon Khan6, Huang Zhang16, Itthayakorn Promputtha2, Lei Cai21, Putarak Chomnunti9, Rui-Lin Zhao21, Saisamorn Lumyong2, Saranyaphat Boonmee9, Ting-Chi Wen26, Peter E. Mortimer7, Jianchu Xu6 
TL;DR: The present study describes 12 new genera, 74 new species, three new combinations, two reference specimens, a re-circumscription of the epitype, and 15 records of sexual-asexual morph connections, new hosts and new geographical distributions.
Abstract: This article is the ninth in the series of Fungal Diversity Notes, where 107 taxa distributed in three phyla, nine classes, 31 orders and 57 families are described and illustrated. Taxa described in the present study include 12 new genera, 74 new species, three new combinations, two reference specimens, a re-circumscription of the epitype, and 15 records of sexual-asexual morph connections, new hosts and new geographical distributions. Twelve new genera comprise Brunneofusispora, Brunneomurispora, Liua, Lonicericola, Neoeutypella, Paratrimmatostroma, Parazalerion, Proliferophorum, Pseudoastrosphaeriellopsis, Septomelanconiella, Velebitea and Vicosamyces. Seventy-four new species are Agaricus memnonius, A. langensis, Aleurodiscus patagonicus, Amanita flavoalba, A. subtropicana, Amphisphaeria mangrovei, Baorangia major, Bartalinia kunmingensis, Brunneofusispora sinensis, Brunneomurispora lonicerae, Capronia camelliae-yunnanensis, Clavulina thindii, Coniochaeta simbalensis, Conlarium thailandense, Coprinus trigonosporus, Liua muriformis, Cyphellophora filicis, Cytospora ulmicola, Dacrymyces invisibilis, Dictyocheirospora metroxylonis, Distoseptispora thysanolaenae, Emericellopsis koreana, Galiicola baoshanensis, Hygrocybe lucida, Hypoxylon teeravasati, Hyweljonesia indica, Keissleriella caraganae, Lactarius olivaceopallidus, Lactifluus midnapurensis, Lembosia brigadeirensis, Leptosphaeria urticae, Lonicericola hyaloseptispora, Lophiotrema mucilaginosis, Marasmiellus bicoloripes, Marasmius indojasminodorus, Micropeltis phetchaburiensis, Mucor orantomantidis, Murilentithecium lonicerae, Neobambusicola brunnea, Neoeutypella baoshanensis, Neoroussoella heveae, Neosetophoma lonicerae, Ophiobolus malleolus, Parabambusicola thysanolaenae, Paratrimmatostroma kunmingensis, Parazalerion indica, Penicillium dokdoense, Peroneutypa mangrovei, Phaeosphaeria cycadis, Phanerochaete australosanguinea, Plectosphaerella kunmingensis, Plenodomus artemisiae, P. lijiangensis, Proliferophorum thailandicum, Pseudoastrosphaeriellopsis kaveriana, Pseudohelicomyces menglunicus, Pseudoplagiostoma mangiferae, Robillarda mangiferae, Roussoella elaeicola, Russula choptae, R. uttarakhandia, Septomelanconiella thailandica, Spencermartinsia acericola, Sphaerellopsis isthmospora, Thozetella lithocarpi, Trechispora echinospora, Tremellochaete atlantica, Trichoderma koreanum, T. pinicola, T. rugulosum, Velebitea chrysotexta, Vicosamyces venturisporus, Wojnowiciella kunmingensis and Zopfiella indica. Three new combinations are Baorangia rufomaculata, Lanmaoa pallidorosea and Wojnowiciella rosicola. The reference specimens of Canalisporium kenyense and Tamsiniella labiosa are designated. The epitype of Sarcopeziza sicula is re-circumscribed based on cyto- and histochemical analyses. The sexual-asexual morph connection of Plenodomus sinensis is reported from ferns and Cirsium for the first time. In addition, the new host records and country records are Amanita altipes, A. melleialba, Amarenomyces dactylidis, Chaetosphaeria panamensis, Coniella vitis, Coprinopsis kubickae, Dothiorella sarmentorum, Leptobacillium leptobactrum var. calidus, Muyocopron lithocarpi, Neoroussoella solani, Periconia cortaderiae, Phragmocamarosporium hederae, Sphaerellopsis paraphysata and Sphaeropsis eucalypticola.

171 citations


Journal ArticleDOI
TL;DR: The implementation of integrated control programmes and appropriate resistance management strategies as part of such programs is of utmost importance to keep tomato pinworm infestations under economic damage thresholds, thus guaranteeing sustainable yields.
Abstract: The South American tomato pinworm, Tuta absoluta (Meyrick) (Lepidoptera: Gelechiidae), is an invasive pest difficult to control. Insecticide application is quite common and remains the prevalent control method particularly in open-field cultivation systems. As a result, insecticide resistance to many chemical classes of insecticides has been described both in South America and in Europe. The development of insecticide resistance is relatively fast in this species, and the main mechanisms involved are altered target-site sensitivity and/or enhanced detoxification, depending on the chemical class. However, insecticide resistance mechanisms do not differ between South America and Europe and are mainly due to simple genotype variations leading to high levels of resistance. The presence of resistance alleles at low frequency, especially against newer chemistry, is of major concern, as they tend to spread with the invasions making tomato pinworm particularly difficult to control. The monitoring methods and management programmes developed for the species benefited from the pro-activity of the Insecticide Resistance Action Committee and its country groups, particularly in Brazil and Spain. Bioassay methods were developed, resistance monitoring activities initiated and resistance management guidance was provided. The implementation of integrated control programmes and appropriate resistance management strategies as part of such programs is of utmost importance to keep tomato pinworm infestations under economic damage thresholds, thus guaranteeing sustainable yields.

138 citations


Journal ArticleDOI
Kevin D. Hyde, Danushka S. Tennakoon, Rajesh Jeewon1, D. Jayarama Bhat2, Sajeewa S. N. Maharachchikumbura3, Walter Rossi4, Marco Leonardi4, Hyang Burm Lee5, Hye Yeon Mun, Jos Houbraken6, Thuong T. T. Nguyen5, Sun Jeong Jeon5, Jens Christian Frisvad7, Dhanushka N. Wanasinghe, Robert Lücking8, André Aptroot9, Marcela Eugenia da Silva Cáceres10, Samantha C. Karunarathna, Sinang Hongsanan11, Sinang Hongsanan12, Rungtiwa Phookamsak, Nimali I. de Silva13, Nimali I. de Silva12, Nimali I. de Silva14, Kasun M. Thambugala15, Ruvishika S. Jayawardena12, Indunil C. Senanayake11, Indunil C. Senanayake12, Saranyaphat Boonmee12, Jie Chen, Zong-Long Luo16, Chayanard Phukhamsakda12, Olinto Liparini Pereira17, V.P. Abreu17, André Wilson Campos Rosado17, Buyck Bart18, Emile Randrianjohany, Valérie Hofstetter, Tatiana Baptista Gibertoni19, Adriene Mayra Soares20, Helio Longoni Plautz, Helen Maria Pontes Sotão20, William Kalhy Silva Xavier, Jadson D. P. Bezerra19, Thays Gabrielle Lins de Oliveira19, Cristina Maria de Souza-Motta19, Oliane Maria Correia Magalhães19, Digvijayini Bundhun13, Digvijayini Bundhun12, Dulanjalee Harishchandra12, Ishara S. Manawasinghe12, Wei Dong, Sheng-Nan Zhang12, Sheng-Nan Zhang13, Dan Feng Bao16, Dan Feng Bao12, Dan Feng Bao13, Milan C. Samarakoon13, Milan C. Samarakoon12, Dhandevi Pem, Anuruddha Karunarathna, Chuan Gen Lin12, Jing Yang, Rekhani H. Perera, Vinit Kumar12, Vinit Kumar13, Shi Ke Huang, Monika C. Dayarathne, Anusha H. Ekanayaka12, Anusha H. Ekanayaka14, Subashini C. Jayasiri14, Subashini C. Jayasiri12, Yuan-Pin Xiao, Sirinapa Konta, Tuula Niskanen21, Kare Liimatainen21, Yu Cheng Dai22, Xiao Hong Ji22, Xue Mei Tian23, Armin Mešić, Sanjay K. Singh24, Kunthida Phutthacharoen12, Lei Cai25, Touny Sorvongxay12, Vinodhini Thiyagaraja, Chada Norphanphoun, Napalai Chaiwan, Yong Zhong Lu26, Yong Zhong Lu12, Hong-Bo Jiang, Jin-Feng Zhang12, Pranami D. Abeywickrama12, Janith V. S. Aluthmuhandiram12, Rashika S. Brahmanage12, Ming Zeng, Thilini Chethana12, De-Ping Wei13, De-Ping Wei12, De-Ping Wei14, Martina Réblová27, Jacques Fournier, Jana Nekvindová, Renan do Nascimento Barbosa19, José Ewerton Felinto dos Santos19, Neiva Tinti de Oliveira19, Guo Jie Li28, Damien Ertz29, Qiu Ju Shang12, Alan J. L. Phillips30, Chang Hsin Kuo31, Erio Camporesi, Timur S. Bulgakov, Saisamorn Lumyong, E. B. Gareth Jones32, E. B. Gareth Jones12, Putarak Chomnunti12, Eleni Gentekaki12, Frank Bungartz33, Frank Bungartz34, Frank Bungartz35, Xiang Yu Zeng26, Xiang Yu Zeng12, Sally C. Fryar36, Zdenko Tkalčec, Junmin Liang28, Guangshuo Li28, Guangshuo Li37, Ting-Chi Wen26, Paras Nath Singh24, Yusufjon Gafforov38, Yusufjon Gafforov39, Yusufjon Gafforov28, Itthayakorn Promputtha13, Erandi Yasanthika12, Ishani D. Goonasekara12, Ishani D. Goonasekara14, Rui-Lin Zhao28, Qi Zhao14, Paul M. Kirk21, Jian-Kui Liu40, Ji Ye Yan, Peter E. Mortimer14, Jianchu Xu25, Jianchu Xu14, Mingkwan Doilom 
TL;DR: The present study describes one new family (Pseudoberkleasmiaceae in Dothideomycetes), five new genera (Caatingomyces, Cryptoschizotrema, Neoacladium, Paramassaria and Trochilispora), 71 new species and twelve new combinations.
Abstract: This article is the tenth series of the Fungal Diversity Notes, where 114 taxa distributed in three phyla, ten classes, 30 orders and 53 families are described and illustrated. Taxa described in the present study include one new family (viz. Pseudoberkleasmiaceae in Dothideomycetes), five new genera (Caatingomyces, Cryptoschizotrema, Neoacladium, Paramassaria and Trochilispora) and 71 new species, (viz. Acrogenospora thailandica, Amniculicola aquatica, A. guttulata, Angustimassarina sylvatica, Blackwellomyces lateris, Boubovia gelatinosa, Buellia viridula, Caatingomyces brasiliensis, Calophoma humuli, Camarosporidiella mori, Canalisporium dehongense, Cantharellus brunneopallidus, C. griseotinctus, Castanediella meliponae, Coprinopsis psammophila, Cordyceps succavus, Cortinarius minusculus, C. subscotoides, Diaporthe italiana, D. rumicicola, Diatrypella delonicis, Dictyocheirospora aquadulcis, D. taiwanense, Digitodesmium chiangmaiense, Distoseptispora dehongensis, D. palmarum, Dothiorella styphnolobii, Ellisembia aurea, Falciformispora aquatic, Fomitiporia carpinea, F. lagerstroemiae, Grammothele aurantiaca, G. micropora, Hermatomyces bauhiniae, Jahnula queenslandica, Kamalomyces mangrovei, Lecidella yunnanensis, Micarea squamulosa, Muriphaeosphaeria angustifoliae, Neoacladium indicum, Neodidymelliopsis sambuci, Neosetophoma miscanthi, N. salicis, Nodulosphaeria aquilegiae, N. thalictri, Paramassaria samaneae, Penicillium circulare, P. geumsanense, P. mali-pumilae, P. psychrotrophicum, P. wandoense, Phaeoisaria siamensis, Phaeopoacea asparagicola, Phaeosphaeria penniseti, Plectocarpon galapagoense, Porina sorediata, Pseudoberkleasmium chiangmaiense, Pyrenochaetopsis sinensis, Rhizophydium koreanum, Russula prasina, Sporoschisma chiangraiense, Stigmatomyces chamaemyiae, S. cocksii, S. papei, S. tschirnhausii, S. vikhrevii, Thysanorea uniseptata, Torula breviconidiophora, T. polyseptata, Trochilispora schefflerae and Vaginatispora palmae). Further, twelve new combinations (viz. Cryptoschizotrema cryptotrema, Prolixandromyces australi, P. elongatus, P. falcatus, P. longispinae, P. microveliae, P. neoalardi, P. polhemorum, P. protuberans, P. pseudoveliae, P. tenuistipitis and P. umbonatus), an epitype is chosen for Cantharellus goossensiae, a reference specimen for Acrogenospora sphaerocephala and new synonym Prolixandromyces are designated. Twenty-four new records on new hosts and new geographical distributions are also reported (i.e. Acrostalagmus annulatus, Cantharellus goossensiae, Coprinopsis villosa, Dothiorella plurivora, Dothiorella rhamni, Dothiorella symphoricarposicola, Dictyocheirospora rotunda, Fasciatispora arengae, Grammothele brasiliensis, Lasiodiplodia iraniensis, Lembosia xyliae, Morenoina palmicola, Murispora cicognanii, Neodidymelliopsis farokhinejadii, Neolinocarpon rachidis, Nothophoma quercina, Peroneutypa scoparia, Pestalotiopsis aggestorum, Pilidium concavum, Plagiostoma salicellum, Protofenestella ulmi, Sarocladium kiliense, Tetraploa nagasakiensis and Vaginatispora armatispora).

131 citations


Journal ArticleDOI
TL;DR: Novel species of fungi described in this study include those from various countries as follows: Australia, Chaetomella pseudocircinoseta and Coniella pseudodiospyri on Eucalyptus microcorys leaves, Cladophialophora eucalyPTi, TeratosphaeriaDunnii and Vermiculariopsiella dunnii on EUCalypti leaves, Cylindrium grande and Hypsotheca e
Abstract: Novel species of fungi described in this study include those from various countries as follows: Australia, Chaetomella pseudocircinoseta and Coniella pseudodiospyri on Eucalyptus microcorys leaves, Cladophialophora eucalypti, Teratosphaeria dunnii and Vermiculariopsiella dunnii on Eucalyptus dunnii leaves, Cylindrium grande and Hypsotheca eucalyptorum on Eucalyptus grandis leaves, Elsinoe salignae on Eucalyptus saligna leaves, Marasmius lebeliae on litter of regenerating subtropical rainforest, Phialoseptomonium eucalypti (incl. Phialoseptomonium gen. nov.) on Eucalyptus grandis × camaldulensis leaves, Phlogicylindrium pawpawense on Eucalyptus tereticornis leaves, Phyllosticta longicauda as an endophyte from healthy Eustrephus latifolius leaves, Pseudosydowia eucalyptorum on Eucalyptus sp. leaves, Saitozyma wallum on Banksia aemula leaves, Teratosphaeria henryi on Corymbia henryi leaves. Brazil, Aspergillus bezerrae, Backusella azygospora, Mariannaea terricola and Talaromyces pernambucoensis from soil, Calonectria matogrossensis on Eucalyptus urophylla leaves, Calvatia brasiliensis on soil, Carcinomyces nordestinensis on Bromelia antiacantha leaves, Dendryphiella stromaticola on small branches of an unidentified plant, Nigrospora brasiliensis on Nopalea cochenillifera leaves, Penicillium alagoense as a leaf endophyte on a Miconia sp., Podosordaria nigrobrunnea on dung, Spegazzinia bromeliacearum as a leaf endophyte on Tilandsia catimbauensis, Xylobolus brasiliensis on decaying wood. Bulgaria, Kazachstania molopis from the gut of the beetle Molops piceus. Croatia, Mollisia endocrystallina from a fallen decorticated Picea abies tree trunk. Ecuador, Hygrocybe rodomaculata on soil. Hungary, Alfoldia vorosii (incl. Alfoldia gen. nov.) from Juniperus communis roots, Kiskunsagia ubrizsyi (incl. Kiskunsagia gen. nov.) from Fumana procumbens roots. India, Aureobasidium tremulum as laboratory contaminant, Leucosporidium himalayensis and Naganishia indica from windblown dust on glaciers. Italy, Neodevriesia cycadicola on Cycas sp. leaves, Pseudocercospora pseudomyrticola on Myrtus communis leaves, Ramularia pistaciae on Pistacia lentiscus leaves, Neognomoniopsis quercina (incl. Neognomoniopsis gen. nov.) on Quercus ilex leaves. Japan, Diaporthe fructicola on Passiflora edulis × P. edulis f. flavicarpa fruit, Entoloma nipponicum on leaf litter in a mixed Cryptomeria japonica and Acer spp. forest. Macedonia, Astraeus macedonicus on soil. Malaysia, Fusicladium eucalyptigenum on Eucalyptus sp. twigs, Neoacrodontiella eucalypti (incl. Neoacrodontiella gen. nov.) on Eucalyptus urophylla leaves. Mozambique, Meliola gorongosensis on dead Philenoptera violacea leaflets. Nepal, Coniochaeta dendrobiicola from Dendriobium lognicornu roots. New Zealand, Neodevriesia sexualis and Thozetella neonivea on Archontophoenix cunninghamiana leaves. Norway, Calophoma sandfjordenica from a piece of board on a rocky shoreline, Clavaria parvispora on soil, Didymella finnmarkica from a piece of Pinus sylvestris driftwood. Poland, Sugiyamaella trypani from soil. Portugal, Colletotrichum feijoicola from Acca sellowiana. Russia, Crepidotus tobolensis on Populus tremula debris, Entoloma ekaterinae, Entoloma erhardii and Suillus gastroflavus on soil, Nakazawaea ambrosiae from the galleries of Ips typographus under the bark of Picea abies. Slovenia, Pluteus ludwigii on twigs of broadleaved trees. South Africa, Anungitiomyces stellenboschiensis (incl. Anungitiomyces gen. nov.) and Niesslia stellenboschiana on Eucalyptus sp. leaves, Beltraniella pseudoportoricensis on Podocarpus falcatus leaf litter, Corynespora encephalarti on Encephalartos sp. leaves, Cytospora pavettae on Pavetta revoluta leaves, Helminthosporium erythrinicola on Erythrina humeana leaves, Helminthosporium syzygii on a Syzygium sp. bark canker, Libertasomyces aloeticus on Aloe sp. leaves, Penicillium lunae from Musa sp. fruit, Phyllosticta lauridiae on Lauridia tetragona leaves, Pseudotruncatella bolusanthi (incl. Pseudotruncatellaceae fam. nov.) and Dactylella bolusanthi on Bolusanthus speciosus leaves. Spain, Apenidiella foetida on submerged plant debris, Inocybe grammatoides on Quercus ilex subsp. ilex forest humus, Ossicaulis salomii on soil, Phialemonium guarroi from soil. Thailand, Pantospora chromolaenae on Chromolaena odorata leaves. Ukraine, Cadophora helianthi from Helianthus annuus stems. USA, Boletus pseudopinophilus on soil under slash pine, Botryotrichum foricae, Penicillium americanum and Penicillium minnesotense from air. Vietnam, Lycoperdon vietnamense on soil. Morphological and culture characteristics are supported by DNA barcodes.

Journal ArticleDOI
Lourens Poorter1, Danaë M. A. Rozendaal, Frans Bongers1, Jarcilene S. Almeida-Cortez2, Angelica M. Almeyda Zambrano3, Francisco S. Álvarez4, José Luis Andrade, Luis Felipe Arreola Villa5, Patricia Balvanera5, Justin M. Becknell6, Tony Vizcarra Bentos7, Radika Bhaskar8, Vanessa K. Boukili, Pedro H. S. Brancalion9, Eben N. Broadbent3, Ricardo Gomes César9, Jérôme Chave10, Robin L. Chazdon11, Robin L. Chazdon12, Gabriel Dalla Colletta13, Dylan Craven14, Ben H. J. de Jong, Julie S. Denslow15, Daisy H. Dent16, Daisy H. Dent17, Saara J. DeWalt18, Elisa Díaz García9, Juan Manuel Dupuy, Sandra M. Durán19, Sandra M. Durán20, Mário M. Espírito Santo, María C. Fandiño, Geraldo Wilson Fernandes21, Bryan Finegan4, Vanessa Granda Moser4, Jefferson S. Hall17, José Luis Hernández-Stefanoni, Catarina C. Jakovac, André Braga Junqueira, Deborah K. Kennard22, Edwin Lebrija-Trejos23, Susan G. Letcher24, Madelon Lohbeck1, Omar R. Lopez17, Erika Marin-Spiotta25, Miguel Martínez-Ramos5, Sebastião Venâncio Martins26, Paulo Eduardo dos Santos Massoca7, Jorge A. Meave5, Rita C. G. Mesquita7, Francisco Mora5, Vanessa de Souza Moreno9, Sandra Cristina Müller27, Rodrigo Muñoz5, Robert Muscarella28, Robert Muscarella29, Silvio Nolasco de Oliveira Neto26, Yule Roberta Ferreira Nunes, Susana Ochoa-Gaona, Horacio Paz5, Marielos Peña-Claros1, Daniel Piotto, Jorge Ruiz30, Lucía Sanaphre-Villanueva31, Arturo Sanchez-Azofeifa20, Naomi B. Schwartz32, Marc K. Steininger33, William Wayt Thomas34, Marisol Toledo, María Uriarte35, Luis P. Utrera4, Michiel van Breugel36, Michiel van Breugel37, Michiel van Breugel17, Masha T. van der Sande, Hans van der Wal38, Maria das Dores Magalhães Veloso, Hans F. M. Vester, Ima Célia Guimarães Vieira39, Pedro Manuel Villa26, G. Bruce Williamson7, G. Bruce Williamson40, S. Joseph Wright17, Kátia Janaina Zanini27, Jess K. Zimmerman41, Mark Westoby42 
TL;DR: Forest recovery is analyzed using 1,403 plots that differ in age since agricultural abandonment from 50 sites across the Neotropics to analyse changes in community composition using species-specific stem wood density (WD), which is a key trait for plant growth, survival and forest carbon storage.
Abstract: Tropical forests are converted at an alarming rate for agricultural use and pastureland, but also regrow naturally through secondary succession. For successful forest restoration, it is essential to understand the mechanisms of secondary succession. These mechanisms may vary across forest types, but analyses across broad spatial scales are lacking. Here, we analyse forest recovery using 1,403 plots that differ in age since agricultural abandonment from 50 sites across the Neotropics. We analyse changes in community composition using species-specific stem wood density (WD), which is a key trait for plant growth, survival and forest carbon storage. In wet forest, succession proceeds from low towards high community WD (acquisitive towards conservative trait values), in line with standard successional theory. However, in dry forest, succession proceeds from high towards low community WD (conservative towards acquisitive trait values), probably because high WD reflects drought tolerance in harsh early successional environments. Dry season intensity drives WD recovery by influencing the start and trajectory of succession, resulting in convergence of the community WD over time as vegetation cover builds up. These ecological insights can be used to improve species selection for reforestation. Reforestation species selected to establish a first protective canopy layer should, among other criteria, ideally have a similar WD to the early successional communities that dominate under the prevailing macroclimatic conditions.

Journal ArticleDOI
TL;DR: The TyG index was positively associated with a higher prevalence of symptomatic CAD, with metabolic and behavioral risk factors, and could be used as a marker for atherosclerosis.
Abstract: The triglyceride-glucose index (TyG index) is a tool for insulin resistance evaluation, however, little is known about its association with coronary artery disease (CAD), which is the major cardiovascular death cause, and what factors may be associated with TyG index. To evaluate the association between the TyG index and the prevalence of CAD phases, as well as cardiovascular risk factors. The baseline data of patients in secondary care in cardiology from Brazilian Cardioprotective Nutritional Program Trial (BALANCE Program Trial) were analyzed. Anthropometric, clinical, socio-demographic and food consumption data were collected by trained professionals. The TyG index was calculated by the formula: Ln (fasting triglycerides (mg/dl) × fasting blood glucose (mg/dl)/2) and regression models were used to evaluate the associations. We evaluated 2330 patients, which the majority was male (58.1%) and elderly (62.1%). The prevalence of symptomatic CAD was 1.16 times higher in patients classified in the last tertile of the TyG index (9.9 ± 0.5) compared to those in the first tertile (8.3 ± 0.3). Cardiometabolic risk factors were associated with TyG index, with the highlight for higher carbohydrate and lower lipid consumption in relation to recommendations that reduced the chance of being in the last TyG index tertile. The TyG index was positively associated with a higher prevalence of symptomatic CAD, with metabolic and behavioral risk factors, and could be used as a marker for atherosclerosis. Trial registration ClinicalTrials.gov identifier: NCT01620398. Registered 15 June, 2012

Journal ArticleDOI
Piet Maes1, Scott Adkins2, S. V. Alkhovsky, Tatjana Avšič-Županc3, Matthew J. Ballinger4, Dennis A. Bente5, Martin Beer6, Eric Bergeron7, Carol D. Blair8, Thomas Briese9, Michael J. Buchmeier10, Felicity J. Burt11, Felicity J. Burt12, Charles H. Calisher8, Rémi N. Charrel13, Il-Ryong Choi14, J. Christopher S. Clegg, Juan Carlos de la Torre15, Xavier de Lamballerie13, Joseph L. DeRisi16, Michele Digiaro, Mike Drebot17, Hideki Ebihara18, Toufic Elbeaino, Koray Ergünay19, Charles F. Fulhorst5, Aura R. Garrison20, George Fú Gāo21, Jean-Paul Gonzalez22, Martin H. Groschup23, Martin H. Groschup21, Stephan Günther24, Anne Lise Haenni25, Roy A. Hall26, Roger Hewson27, Holly R. Hughes7, Rakesh K. Jain28, Miranda Gilda Jonson29, Sandra Junglen, Boris Klempa30, Jonas Klingström31, Richard Kormelink32, Amy J. Lambert7, Stanley A. Langevin33, Igor S. Lukashevich34, Marco Marklewitz, Giovanni P. Martelli35, Nicole Mielke-Ehret36, Ali Mirazimi, Hans Peter Mühlbach36, Rayapati A. Naidu37, Márcio Roberto Teixeira Nunes, Gustavo Palacios20, Anna Papa38, Janusz T. Paweska, Clarence J. Peters5, Alexander Plyusnin39, Sheli R. Radoshitzky20, R. O. Resende40, Víctor Romanowski41, Amadou A. Sall42, Maria S. Salvato43, Takahide Sasaya44, Connie S. Schmaljohn20, Xiǎohóng Shí45, Yukio Shirako46, Peter Simmonds47, Manuela Sironi, Jin Won Song48, Jessica R. Spengler7, Mark D. Stenglein8, Robert B. Tesh5, Massimo Turina, Taiyun Wei49, Anna E. Whitfield50, Shyi Dong Yeh51, F. Murilo Zerbini52, Yong-Zhen Zhang23, Yong-Zhen Zhang21, Xueping Zhou, Jens H. Kuhn53 
Katholieke Universiteit Leuven1, United States Department of Agriculture2, University of Ljubljana3, Mississippi State University4, University of Texas Medical Branch5, Friedrich Loeffler Institute6, Centers for Disease Control and Prevention7, Colorado State University8, Columbia University9, University of California, Irvine10, National Health Laboratory Service11, University of the Free State12, Aix-Marseille University13, International Rice Research Institute14, Scripps Research Institute15, University of California, San Francisco16, Public Health Agency of Canada17, Mayo Clinic18, Hacettepe University19, United States Army Medical Research Institute of Infectious Diseases20, Chinese Center for Disease Control and Prevention21, Kansas State University22, Fudan University23, Bernhard Nocht Institute for Tropical Medicine24, Paris Diderot University25, University of Queensland26, Public Health England27, Indian Agricultural Research Institute28, Seoul National University29, Slovak Academy of Sciences30, Karolinska Institutet31, Wageningen University and Research Centre32, University of Washington33, University of Louisville34, University of Bari35, University of Hamburg36, Washington State University37, Aristotle University of Thessaloniki38, University of Helsinki39, University of Brasília40, National University of La Plata41, Pasteur Institute42, University of Maryland, Baltimore43, National Agriculture and Food Research Organization44, University of Glasgow45, University of Tokyo46, University of Oxford47, Korea University48, Fujian Agriculture and Forestry University49, North Carolina State University50, National Chung Hsing University51, Universidade Federal de Viçosa52, National Institutes of Health53
TL;DR: The updated taxonomy of the order Bunyavirales is presented as now accepted by the International Committee on Taxonomy of Viruses (ICTV).
Abstract: In October 2018, the order Bunyavirales was amended by inclusion of the family Arenaviridae, abolishment of three families, creation of three new families, 19 new genera, and 14 new species, and renaming of three genera and 22 species. This article presents the updated taxonomy of the order Bunyavirales as now accepted by the International Committee on Taxonomy of Viruses (ICTV).

Journal ArticleDOI
TL;DR: The ICTV has approved, by an absolute majority, the creation of additional taxonomical ranks above those recognized previously, to encompass the entire spectrum of virus diversity.
Abstract: This article reports the changes to virus taxonomy approved and ratified by the International Committee on Taxonomy of Viruses (ICTV) in October 2018. Of note, the ICTV has approved, by an absolute majority, the creation of additional taxonomical ranks above those recognized previously. A total of 15 ranks (realm, subrealm, kingdom, subkingdom, phylum, subphylum, class, subclass, order, suborder, family, subfamily, genus, subgenus, and species) are now available to encompass the entire spectrum of virus diversity. Classification at ranks above genus is not obligatory but can be used by the authors of new taxonomic proposals when scientific justification is provided.

Journal ArticleDOI
01 Jun 2019-Ecology
TL;DR: The ATLANTIC BIRD TRAITS (ABT) is the most comprehensive data set on measurements of bird morphological traits found in a biodiversity hotspot; it provides data for basic and applied research at multiple scales, from individual to community, and from the local to the macroecological perspectives.
Abstract: Scientists have long been trying to understand why the Neotropical region holds the highest diversity of birds on Earth. Recently, there has been increased interest in morphological variation between and within species, and in how climate, topography, and anthropogenic pressures may explain and affect phenotypic variation. Because morphological data are not always available for many species at the local or regional scale, we are limited in our understanding of intra- and interspecies spatial morphological variation. Here, we present the ATLANTIC BIRD TRAITS, a data set that includes measurements of up to 44 morphological traits in 67,197 bird records from 2,790 populations distributed throughout the Atlantic forests of South America. This data set comprises information, compiled over two centuries (1820-2018), for 711 bird species, which represent 80% of all known bird diversity in the Atlantic Forest. Among the most commonly reported traits are sex (n = 65,717), age (n = 63,852), body mass (n = 58,768), flight molt presence (n = 44,941), molt presence (n = 44,847), body molt presence (n = 44,606), tail length (n = 43,005), reproductive stage (n = 42,588), bill length (n = 37,409), body length (n = 28,394), right wing length (n = 21,950), tarsus length (n = 20,342), and wing length (n = 18,071). The most frequently recorded species are Chiroxiphia caudata (n = 1,837), Turdus albicollis (n = 1,658), Trichothraupis melanops (n = 1,468), Turdus leucomelas (n = 1,436), and Basileuterus culicivorus (n = 1,384). The species recorded in the greatest number of sampling localities are Basileuterus culicivorus (n = 243), Trichothraupis melanops (n = 242), Chiroxiphia caudata (n = 210), Platyrinchus mystaceus (n = 208), and Turdus rufiventris (n = 191). ATLANTIC BIRD TRAITS (ABT) is the most comprehensive data set on measurements of bird morphological traits found in a biodiversity hotspot; it provides data for basic and applied research at multiple scales, from individual to community, and from the local to the macroecological perspectives. No copyright or proprietary restrictions are associated with the use of this data set. Please cite this data paper when the data are used in publications or teaching and educational activities.

Journal ArticleDOI
TL;DR: Mining 12 million Twitter messages, this paper reconstructs a network in which users interchange opinions related to the impeachment of the former Brazilian President Dilma Rousseff and defines a continuous political leaning parameter, independent of the network’s structure, that allows to quantify the presence of echo chambers in the strongly connected component of thenetwork.
Abstract: Echo chambers in online social networks, in which users prefer to interact only with ideologically-aligned peers, are believed to facilitate misinformation spreading and contribute to radicalize political discourse. In this paper, we gauge the effects of echo chambers in information spreading phenomena over political communication networks. Mining 12 million Twitter messages, we reconstruct a network in which users interchange opinions related to the impeachment of the former Brazilian President Dilma Rousseff. We define a continuous political leaning parameter, independent of the network’s structure, that allows to quantify the presence of echo chambers in the strongly connected component of the network. These are reflected in two well-separated communities of similar sizes with opposite views of the impeachment process. By means of simple spreading models, we show that the capability of users in propagating the content they produce, measured by the associated spreading capacity, strongly depends on their attitude. Users expressing pro-impeachment leanings are capable to transmit information, on average, to a larger audience than users expressing anti-impeachment leanings. Furthermore, the users’ spreading capacity is correlated to the diversity, in terms of political position, of the audience reached. Our method can be exploited to identify the presence of echo chambers and their effects across different contexts and shed light upon the mechanisms allowing to break echo chambers.

Journal ArticleDOI
TL;DR: In this article, the authors provide new data of crop yields obtained under free-air CO2 enrichment conditions, and discuss predictions on the future of the coffee crop as based on rising temperature and emphasize the role of CO2 as a key player for mitigating harmful effects of supra-optimal temperatures on coffee physiology and bean quality.
Abstract: Coffee, one of the most heavily globally traded agricultural commodities, has been categorized as a highly sensitive plant species to progressive climatic change. Here, we summarize recent insights on the coffee plant’s physiological performance at elevated atmospheric carbon dioxide concentration [CO2]. We specifically (i) provide new data of crop yields obtained under free-air CO2 enrichment conditions, (ii) discuss predictions on the future of the coffee crop as based on rising temperature and (iii) emphasize the role of [CO2] as a key player for mitigating harmful effects of supra-optimal temperatures on coffee physiology and bean quality. We conclude that the effects of global warming on the climatic suitability of coffee may be lower than previously assumed. We highlight perspectives and priorities for further research to improve our understanding on how the coffee plant will respond to present and progressive climate change.

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TL;DR: It is proposed that activating the capsaicinoid biosynthetic pathway in a more amenable species such as tomato could be the next step in the fascinating story of pungent crops.

Journal ArticleDOI
Pedro W. Crous, Michael J. Wingfield1, Lorenzo Lombard, Francois Roets2, Wijnand J. Swart3, Pablo Alvarado, Angus J. Carnegie, Gabriel Moreno4, J. Jennifer Luangsa-ard5, R. Thangavel6, A. V. Alexandrova7, Iuri Goulart Baseia8, Jean-Michel Bellanger9, A.E. Bessette, A.R. Bessette, De la Peña-Lastra S10, Dania García, Josepa Gené, Pham Thg, M. Heykoop4, E. F. Malysheva11, Malysheva11, María P. Martín12, O.V. Morozova, W. Noisripoom5, B. E. Overton13, Rea Ae13, Brent J. Sewall14, Matthew E. Smith15, Christopher W. Smyth13, K. Tasanathai5, Cobus M. Visagie1, Slavomír Adamčík16, Artur Alves17, J.P. Andrade18, Aninat Mj19, Araújo Rvb20, Juan-Julián Bordallo, Thaís Regina Boufleur21, Riccardo Baroncelli22, Robert W. Barreto23, Bolin J, Julio Cabero, Miroslav Caboň16, Giovanni Cafà24, Caffot Mlh25, Li-Zhen Cai26, Carlavilla4, Renato Chávez27, de Castro Rrl21, Lynn Delgat28, Deschuyteneer D, Dios Mm29, Domínguez Ls30, Harry C. Evans24, Eyssartier G, B.W. Ferreira23, C.N. Figueiredo31, Fengjiang Liu26, Jacques Fournier, Lygia Vitoria Galli-Terasawa32, Carlos Gil-Durán27, Chirlei Glienke32, Gonçalves Mfm17, Gryta H33, Josep Guarro, Himaman W34, Hywel-Jones N35, I. Iturrieta-González, N. E. Ivanushkina, Jargeat P33, Abdul Nasir Khalid36, Khan J37, Munazza Kiran36, Levente Kiss38, G. A. Kochkina, Miroslav Kolařík, Alena Kubátová39, Lodge Dj40, Michael Loizides, Luque D, José Luis Manjón4, Marbach Pas31, Nelson Sidnei Massola21, Mata M4, Andrew N. Miller41, Suchada Mongkolsamrit5, Pierre-Arthur Moreau42, Asunción Morte43, Alija B. Mujic44, Alfonso Navarro-Ródenas43, Márk Z. Németh45, Nóbrega Tf23, Alena Nováková, Ibai Olariaga46, Svetlana Ozerskaya, M.A. Palma19, Petters-Vandresen Dal32, E. Piontelli19, E. S. Popov, A. Rodríguez43, Requejo Ó, Rodrigues Acm47, Rong Ih, Jolanda Roux1, Keith A. Seifert48, Silva Bdb20, František Sklenář, Jason A. Smith49, Julieth O. Sousa8, Souza Hg31, De Souza Jt, Švec K, Tanchaud P, Joey B. Tanney50, Terasawa F32, D. Thanakitpipattana5, D. Torres-Garcia, Inmaculada Vaca51, Niloofar Vaghefi38, van Iperen Al, O. V. Vasilenko, Annemieke Verbeken28, Neriman Yilmaz1, Juan Carlos Zamora52, M. Zapata, Željko Jurjević, Johannes Z. Groenewald 
University of Pretoria1, Stellenbosch University2, University of the Free State3, University of Alcalá4, Biotec5, Ministry for Primary Industries6, Moscow State University7, Federal University of Rio Grande do Norte8, University of Montpellier9, University of Santiago de Compostela10, Russian Academy of Sciences11, Spanish National Research Council12, Lock Haven University of Pennsylvania13, Temple University14, Florida Museum of Natural History15, Slovak Academy of Sciences16, University of Aveiro17, State University of Feira de Santana18, Valparaiso University19, Federal University of Bahia20, Escola Superior de Agricultura Luiz de Queiroz21, University of Salamanca22, Universidade Federal de Viçosa23, CABI24, National University of Jujuy25, Chinese Academy of Sciences26, University of Santiago, Chile27, Ghent University28, Facultad de Ciencias Exactas y Naturales29, National University of Cordoba30, Universidade Federal do Recôncavo da Bahia31, Federal University of Paraná32, Paul Sabatier University33, Department of National Parks, Wildlife and Plant Conservation34, Life Sciences Institute35, University of the Punjab36, University of Swat37, University of Southern Queensland38, Charles University in Prague39, University of Georgia40, University of Illinois at Urbana–Champaign41, Lille University of Science and Technology42, University of Murcia43, California State University, Fresno44, Hungarian Academy of Sciences45, King Juan Carlos University46, Federal University of Pernambuco47, Agriculture and Agri-Food Canada48, University of Florida49, Natural Resources Canada50, University of Chile51, Uppsala University52
TL;DR: Novel species of fungi described in this study include those from various countries as follows: Antarctica, Apenidiella antarctica from permafrost, Cladosporium fildesense from an unidentified marine sponge.
Abstract: Novel species of fungi described in this study include those from various countries as follows: Antarctica , Apenidiella antarctica from permafrost, Cladosporium fildesense fromanunidentifiedmarinesponge. Argentina , Geastrum wrightii onhumusinmixedforest. Australia , Golovinomyces glandulariae on Glandularia aristigera, Neoanungitea eucalyptorum on leaves of Eucalyptus grandis, Teratosphaeria corymbiicola on leaves of Corymbia ficifolia, Xylaria eucalypti on leaves of Eucalyptus radiata. Brazil, Bovista psammophila on soil, Fusarium awaxy on rotten stalks of Zea mays, Geastrum lanuginosum on leaf litter covered soil, Hermetothecium mikaniae-micranthae (incl. Hermetothecium gen. nov.)on Mikania micrantha, Penicillium reconvexovelosoi in soil, Stagonosporopsis vannaccii from pod of Glycine max. British Virgin Isles , Lactifluus guanensis onsoil. Canada , Sorocybe oblongispora on resin of Picea rubens. Chile, Colletotrichum roseum on leaves of Lapageria rosea. China, Setophoma caverna fromcarbonatiteinKarstcave. Colombia , Lareunionomyces eucalypticola on leaves of Eucalyptus grandis. Costa Rica, Psathyrella pivae onwood. Cyprus , Clavulina iris oncalcareoussubstrate. France , Chromosera ambigua and Clavulina iris var. occidentalis onsoil. French West Indies , Helminthosphaeria hispidissima ondeadwood. Guatemala , Talaromyces guatemalensis insoil. Malaysia , Neotracylla pini (incl. Tracyllales ord. nov. and Neotra- cylla gen. nov.)and Vermiculariopsiella pini on needles of Pinus tecunumanii. New Zealand, Neoconiothyrium viticola on stems of Vitis vinifera, Parafenestella pittospori on Pittosporum tenuifolium, Pilidium novae-zelandiae on Phoenix sp. Pakistan , Russula quercus-floribundae onforestfloor. Portugal , Trichoderma aestuarinum from salinewater. Russia , Pluteus liliputianus on fallen branch of deciduous tree, Pluteus spurius on decaying deciduouswoodorsoil. South Africa , Alloconiothyrium encephalarti, Phyllosticta encephalarticola and Neothyrostroma encephalarti (incl. Neothyrostroma gen. nov.)onleavesof Encephalartos sp., Chalara eucalypticola on leaf spots of Eucalyptus grandis × urophylla, Clypeosphaeria oleae on leaves of Olea capensis, Cylindrocladiella postalofficium on leaf litter of Sideroxylon inerme , Cylindromonium eugeniicola (incl. Cylindromonium gen. nov.)onleaflitterof Eugenia capensis , Cyphellophora goniomatis on leaves of Gonioma kamassi , Nothodactylaria nephrolepidis (incl. Nothodactylaria gen. nov. and Nothodactylariaceae fam. nov.)onleavesof Nephrolepis exaltata , Falcocladium eucalypti and Gyrothrix eucalypti on leaves of Eucalyptus sp., Gyrothrix oleae on leaves of Olea capensis subsp. macrocarpa , Harzia metro sideri on leaf litter of Metrosideros sp., Hippopotamyces phragmitis (incl. Hippopota- myces gen. nov.)onleavesof Phragmites australis , Lectera philenopterae on Philenoptera violacea , Leptosillia mayteni on leaves of Maytenus heterophylla , Lithohypha aloicola and Neoplatysporoides aloes on leaves of Aloe sp., Millesimomyces rhoicissi (incl. Millesimomyces gen. nov.) on leaves of Rhoicissus digitata , Neodevriesia strelitziicola on leaf litter of Strelitzia nicolai , Neokirramyces syzygii (incl. Neokirramyces gen. nov.)onleafspots of

Journal ArticleDOI
TL;DR: In this article, the authors report on a qualitative study deploying a Matrix, which allows an analysis and reporting of regional sustainable development initiatives of a set of 22 universities in industrialised and developing countries.

Journal ArticleDOI
TL;DR: Several aspects of sheltering natural enemies are reviewed, including the ecological mechanisms that promote conservation biological control, potential negative interactions, and directions for creating shelters, in addition to indicating challenges and recommendations for future work.

Journal ArticleDOI
TL;DR: The authors combine functional genomics, phylogenetics, and metabolic modeling to describe how diatoms might have functionally integrated nitrogen metabolism during evolution and how metabolic flux is regulated across cellular compartments.
Abstract: Diatoms outcompete other phytoplankton for nitrate, yet little is known about the mechanisms underpinning this ability. Genomes and genome-enabled studies have shown that diatoms possess unique features of nitrogen metabolism however, the implications for nutrient utilization and growth are poorly understood. Using a combination of transcriptomics, proteomics, metabolomics, fluxomics, and flux balance analysis to examine short-term shifts in nitrogen utilization in the model pennate diatom in Phaeodactylum tricornutum, we obtained a systems-level understanding of assimilation and intracellular distribution of nitrogen. Chloroplasts and mitochondria are energetically integrated at the critical intersection of carbon and nitrogen metabolism in diatoms. Pathways involved in this integration are organelle-localized GS-GOGAT cycles, aspartate and alanine systems for amino moiety exchange, and a split-organelle arginine biosynthesis pathway that clarifies the role of the diatom urea cycle. This unique configuration allows diatoms to efficiently adjust to changing nitrogen status, conferring an ecological advantage over other phytoplankton taxa.

Journal ArticleDOI
José Alexandre Melo Demattê1, André Carnieletto Dotto1, Ariane Francine da Silveira Paiva1, Marcus Vinicius Sato1, Ricardo Simão Diniz Dalmolin2, Maria do Socorro Bezerra de Araújo3, Elisângela Benedet da Silva, Marcos Rafael Nanni4, Alexandre ten Caten5, Norberto Cornejo Noronha6, Marilusa Pinto Coelho Lacerda7, José Coelho de Araújo Filho8, Rodnei Rizzo, Henrique Bellinaso, Márcio Rocha Francelino9, Carlos Ernesto Gonçalves Reynaud Schaefer9, Luiz Eduardo Vicente8, Uemeson José dos Santos3, Everardo Valadares de Sá Barretto Sampaio3, Rômulo Simões Cezar Menezes3, José João Lelis Leal de Souza10, Walter Antônio Pereira Abrahão9, Ricardo Marques Coelho11, Célia Regina Grego8, João Luiz Lani9, Antonio Rodrigues Fernandes12, Deyvison A.M. Gonçalves12, Sérgio Henrique Godinho Silva, Michele Duarte de Menezes, Nilton Curi, Eduardo Guimarães Couto13, Lúcia Helena Cunha dos Anjos14, Marcos Bacis Ceddia14, Érika Flávia Machado Pinheiro14, Sabine Grunwald15, Gustavo M. Vasques8, José Marques Júnior16, Airon José da Silva17, Marcos Cabral de Vasconcelos Barreto17, Gabriel Nuto Nóbrega18, Marcelo Z. da Silva, Sara Fernandes Flor de Souza10, Gustavo Souza Valladares19, João Herbert Moreira Viana8, Fabrício da Silva Terra, Ingrid Horák-Terra, Peterson Ricardo Fiorio, Rafael Carvalho da Silva1, Elizio F. Frade Júnior, Raimundo Humberto Cavalcante Lima20, José Maria Filippini Alba8, Valdomiro Severino de Souza Júnior21, Maria De Lourdes Mendonça Santos Brefin8, Maria De Lourdes P. Ruivo, Tiago Osório Ferreira1, Marny A. Brait, Norton Roberto Caetano22, Idone Bringhenti22, Wanderson de Sousa Mendes1, José Lucas Safanelli1, Clécia Cristina Barbosa Guimarães1, Raúl Roberto Poppiel7, Arnaldo Barros e Souza1, Carlos A. Quesada, Hilton T. Zarate do Couto 
15 Nov 2019-Geoderma
TL;DR: The Brazilian Soil Spectral Library (BSSL) as mentioned in this paper was developed in a joint partnership with the Brazilian pedometrics community to standardize and evaluate spectra within the 350-2500nm range of Brazilian soils.

Journal ArticleDOI
TL;DR: It is demonstrated that continuous ingestion of dsRNA with EDTA or liposome-encapsulated-dsRNA can prevent ds RNA from being degraded enzymatically and suggest great potential for using these formulations in dsRNAs delivery to use RNAi as a functional genomics tool or for pest management of stink bugs.
Abstract: Background The Neotropical stink bug Euschistus heros is a major pest in soybean fields. Development of highly species-specific pesticides based on RNA interference (RNAi) could provide a new sustainable and environmentally friendly control strategy. Results Here, the potential of RNAi as a pest control tool against E. heros was assessed. First, target gene selection using a microinjection approach was performed. Seven of the 15 candidate genes tested exhibited > 95% mortality after hemolymph injection of 27.5 ng dsRNA. Subsequently, dsRNA was administered orally using different formulations: naked dsRNA, liposome-encapsulated-dsRNA and dsRNA formulated with EDTA. Liposome-encapsulated dsRNA targeting vATPase A and muscle actin led to significant mortality after 14 days (45% and 42%, respectively), whereas EDTA-formulated dsRNA did so for only one of the target genes. Ex vivo analysis of the dsRNA stability in collected saliva indicated a strong dsRNA-degrading capacity by E. heros saliva, which could explain the need for dsRNA formulations. Conclusion The results demonstrate that continuous ingestion of dsRNA with EDTA or liposome-encapsulated dsRNA can prevent dsRNA from being degraded enzymatically and suggest great potential for using these formulations in dsRNA delivery to use RNAi as a functional genomics tool or for pest management of stink bugs. © 2018 Society of Chemical Industry.

Journal ArticleDOI
TL;DR: The objective of this study was to microencapsulate probiotic cells of Lactobacillus plantarum through a dual process consisting of emulsification followed by complex coacervation using gelatin and gum arabic to characterize the lyophilized microcapsules and evaluate their behavior in simulated in vitro gastrointestinal conditions.

Book ChapterDOI
01 Jan 2019
TL;DR: In this paper, the authors proposed a control plan for monitoring the microbial quality and safety of milk since production to processing, with a wide range of impacts for its quality, safety, and even beneficial features.
Abstract: Milk and dairy products are consumed worldwide and considered as relevant sources of nutrition in humans and animals, not only the newborns. Due to the complexity of the dairy chain, microbial contamination can occur in different steps of production, leading to the development of adequate control plans for monitoring the microbial quality and safety of milk since production to processing. Different microbial groups can contaminate milk, with a wide range of impacts for its quality, safety, and even beneficial features. Important microbial groups are researched in milk to assess the hygienic procedures and conditions during production, such as mesophilic aerobes and coliforms; some groups are considered as relevant spoilage agents, such as psychrotrophics; many bacteria are researched due to their pathogenic potential, such as Listeria monocytogenes and Salmonella spp.; and other bacteria can possess beneficial features, like some lactic acid bacteria strains. This huge diversity is a challenge in the dairy industry, once their monitoring and control became mandatory to testify and guide the raw milk utilization by consumers and dairy industry.

Journal ArticleDOI
TL;DR: This paper used daily rainfall time series data from 112 rain gauges and a recent yearly 1-km land use data set covering the period from 1974 to 2012 to evaluate the effects of the extent of deforestation at different spatial scales on the onset of the rainy season and on the duration of dry spells in southern Amazonia.
Abstract: Amazonian deforestation is causing notable changes in the hydrological cycle by altering important precipitation characteristics. This study uses daily rainfall time series data from 112 rain gauges and a recent yearly 1‐km land use data set covering the period from 1974 to 2012 to evaluate the effects of the extent of deforestation at different spatial scales on the onset of the rainy season and on the duration of dry spells in southern Amazonia. Correlation analyses indicate a delay in the onset of 0.12–0.17 days per percent increase in deforestation. Analysis of cumulative probability density functions emphasizes that the likelihood of rainy season onset occurring earlier than normal decreases as the local deforestation fraction increases. In addition, the probability of occurrence of dry spells in the early and late rainy season is higher in areas with greater deforestation. The delayed onset and longer dry spell events in highly deforested areas increase the climate risk to agriculture in the region.

Journal ArticleDOI
TL;DR: The current state of knowledge of wheat blast is summarized and the most important gaps in understanding of the disease are identified and a research agenda is proposed that aims to improve the management of Wheat blast and limit its threat to global wheat production.
Abstract: Wheat blast was first reported in Brazil in 1985 It spread rapidly across the wheat cropping areas of Brazil to become the most important biotic constraint on wheat production in the region The alarming appearance of wheat blast in Bangladesh in 2016 greatly increased the urgency to understand this disease, including its causes and consequences Here, we summarize the current state of knowledge of wheat blast and aim to identify the most important gaps in our understanding of the disease We also propose a research agenda that aims to improve the management of wheat blast and limit its threat to global wheat production

Journal ArticleDOI
TL;DR: In this article, a review of the structure of lignin and its characteristics for each specific use is presented, with a focus on the characteristics that must have for a specific use.
Abstract: This review details the structure of lignin and curates information on the characteristics that this polymer must have for each specific use. Lignin is a by-product of the pulp and paper industry and the second most abundant biopolymer after cellulose. Approximately 50 million tons of lignin are produced worldwide annually, of which 98% to 99% is incinerated to produce steam, process energy. Just 1% to 2% of the lignin, derived from the sulfite pulp industry, is used in chemical conversion to produce lignosulfonates. Biorefining is a promising approach to promote the wider use of kraft lignin. However, using kraft lignin to produce high value-added products is a great challenge, due to its complex structure, low reactivity, and low solubility, which are factors that limit the lignin’s large-scale use in biorefineries. Recent studies show that kraft lignin can be used as lignosulfonates and dispersants, technical carbons, transportation fuels, bioplastics, and adhesives, but some technological hurdles must be overcome and several industrial tests must be developed to make these uses viable.