Showing papers by "Université de Sherbrooke published in 2009"

Observation of PT-Symmetry Breaking in Complex Optical Potentials

Abstract: In 1998, Bender and Boettcher found that a wide class of Hamiltonians, even though non-Hermitian, can still exhibit entirely real spectra provided that they obey parity-time requirements or PT symmetry. Here we demonstrate experimentally passive PT-symmetry breaking within the realm of optics. This phase transition leads to a loss induced optical transparency in specially designed pseudo-Hermitian guiding potentials.

Understanding teacher identity: an overview of issues in the literature and implications for teacher education

Abstract: While literature on teaching emphasizes the importance of identity in teacher development, understanding identity and the issues related to it can be a challenging endeavour. This article provides an overview of the issues revealed in recent discussions of teacher identity: the problem of defining the concept; the place of the self, and related issues of agency, emotion, narrative and discourse; the role of reflection; and the influence of contextual factors. A particular focus is placed on identity in pre‐service teachers and new practitioners. Implications of an understanding of these issues for programmes of teacher education are highlighted.

Demonstration of two-qubit algorithms with a superconducting quantum processor

Abstract: By exploiting two key aspects of quantum mechanics — the superposition and entanglement of physical states — quantum computers may eventually outperform their classical equivalents. A team based at Yale has achieved an important step towards that goal — the demonstration of the first solid-state quantum processor, which was used to execute two quantum algorithms. Quantum processors based on a few quantum bits have been demonstrated before using nuclear magnetic resonance, cold ion traps and optical systems, all of which bear little resemblance to conventional computers. This new processor is based on superconducting quantum circuits fabricated using conventional nanofabrication technology. There is still a long way to go before quantum computers can challenge the classical type. The processor is very basic, containing just two quantum bits, and operates at a fraction of a degree above absolute zero. But the chip contains all the essential features of a miniature working quantum computer and may prove scalable to more quantum bits and more complex algorithms. Quantum computers, which harness the superposition and entanglement of physical states, hold great promise for the future. Here, the demonstration of a two-qubit superconducting processor and the implementation of quantum algorithms, represents an important step in quantum computing. Quantum computers, which harness the superposition and entanglement of physical states, could outperform their classical counterparts in solving problems with technological impact—such as factoring large numbers and searching databases1,2. A quantum processor executes algorithms by applying a programmable sequence of gates to an initialized register of qubits, which coherently evolves into a final state containing the result of the computation. Building a quantum processor is challenging because of the need to meet simultaneously requirements that are in conflict: state preparation, long coherence times, universal gate operations and qubit readout. Processors based on a few qubits have been demonstrated using nuclear magnetic resonance3,4,5, cold ion trap6,7 and optical8 systems, but a solid-state realization has remained an outstanding challenge. Here we demonstrate a two-qubit superconducting processor and the implementation of the Grover search and Deutsch–Jozsa quantum algorithms1,2. We use a two-qubit interaction, tunable in strength by two orders of magnitude on nanosecond timescales, which is mediated by a cavity bus in a circuit quantum electrodynamics architecture9,10. This interaction allows the generation of highly entangled states with concurrence up to 94 per cent. Although this processor constitutes an important step in quantum computing with integrated circuits, continuing efforts to increase qubit coherence times, gate performance and register size will be required to fulfil the promise of a scalable technology.

Cause and Correlation in Biology: A User's Guide to Path Analysis, Structural Equations and Causal Inference

Abstract: Many problems in biology require an understanding of the relationships among variables in a multivariate causal context. Exploring such cause-effect relationships through a series of statistical methods, this book explains how to test causal hypotheses when randomised experiments cannot be performed. This completely revised and updated edition features detailed explanations for carrying out statistical methods using the popular and freely available R statistical language. Sections on d-sep tests, latent constructs that are common in biology, missing values, phylogenetic constraints, and multilevel models are also an important feature of this new edition. Written for biologists and using a minimum of statistical jargon, the concept of testing multivariate causal hypotheses using structural equations and path analysis is demystified. Assuming only a basic understanding of statistical analysis, this new edition is a valuable resource for both students and practising biologists.

Exploratory Structural Equation Modeling, Integrating CFA and EFA: Application to Students' Evaluations of University Teaching

Abstract: This study is a methodological-substantive synergy, demonstrating the power and flexibility of exploratory structural equation modeling (ESEM) methods that integrate confirmatory and exploratory factor analyses (CFA and EFA), as applied to substantively important questions based on multidimentional students' evaluations of university teaching (SETs). For these data, there is a well established ESEM structure but typical CFA models do not fit the data and substantially inflate correlations among the nine SET factors (median rs = .34 for ESEM, .72 for CFA) in a way that undermines discriminant validity and usefulness as diagnostic feedback. A 13-model taxonomy of ESEM measurement invariance is proposed, showing complete invariance (factor loadings, factor correlations, item uniquenesses, item intercepts, latent means) over multiple groups based on the SETs collected in the first and second halves of a 13-year period. Fully latent ESEM growth models that unconfounded measurement error from communality showed...

α-Linolenic acid supplementation and conversion to n-3 long-chain polyunsaturated fatty acids in humans

Abstract: Blood levels of polyunsaturated fatty acids (PUFA) are considered biomarkers of status. Alpha-linolenic acid, ALA, the plant omega-3, is the dietary precursor for the long-chain omega-3 PUFA eicosapentaenoic acid (EPA), docosapentaenoic acid (DPA), and docosahexaenoic acid (DHA). Studies in normal healthy adults consuming western diets, which are rich in linoleic acid (LA), show that supplemental ALA raises EPA and DPA status in the blood and in breast milk. However, ALA or EPA dietary supplements have little effect on blood or breast milk DHA levels, whereas consumption of preformed DHA is effective in raising blood DHA levels. Addition of ALA to the diets of formula-fed infants does raise DHA, but no level of ALA tested raises DHA to levels achievable with preformed DHA at intakes similar to typical human milk DHA supply. The DHA status of infants and adults consuming preformed DHA in their diets is, on average, greater than that of people who do not consume DHA. With no other changes in diet, improvement of blood DHA status can be achieved with dietary supplements of preformed DHA, but not with supplementation of ALA, EPA, or other precursors.

Classical Latent Profile Analysis of Academic Self-Concept Dimensions: Synergy of Person- and Variable-Centered Approaches to Theoretical Models of Self-Concept

Abstract: In this investigation, we used a classic latent profile analysis (LPA), a person-centered approach, to identify groups of students who had similar profiles for multiple dimensions of academic self-concept (ASC) and related these LPA groups to a diverse set of correlates. Consistent with a priori predictions, we identified 5 LPA groups representing a combination of profile level (high vs. low overall ASC) and profile shape (math vs. verbal self-concepts) that complemented results based on a traditional variable-centered approach. Whereas LPA groups were substantially and logically related to the set of 10 correlates, much of the predictive power of individual ASC factors was lost in the formation of groups and the inclusion of the correlates into the LPA distorted the nature of the groups. LPA issues examined include distinctions between quantitative (level) and qualitative (shape) differences in LPA profiles, goodness of fit and the determination of the number of LPA groups, appropriateness of correlates ...

Confirmatory path analysis in a generalized multilevel context.

Abstract: This paper describes how to test, and potentially falsify, a multivariate causal hypothesis involving only observed variables (i.e., a path analysis) when the data have a hierarchical or multilevel structure, when different variables are potentially defined at different levels of such a hierarchy, and when different variables have different sampling distributions. The test is a generalization of Shipley's d-sep test and can be conducted using standard statistical programs capable of fitting generalized mixed models.

A review of biogas purification processes

Abstract: Biogas is a valuable renewable energy carrier. It can be exploited directly as a fuel or as a raw material for the production of synthesis gas and/or hydrogen. Methane (CH4) and carbon dioxide (CO2) are the main constituents, but biogases also contain significant quantities of undesirable compounds (contaminants), such as hydrogen sulfide (H2S), ammonia (NH3) and siloxanes. The existence and quantities of these contaminants depend on the biogas source (i.e., landfills, anaerobic fermentation of manure). Their presence constitutes a major problem because (i) they can be detrimental to any biogas thermal or thermocatalytic conversion device (e.g., corrosion, erosion, fouling); and (ii) they generate harmful environmental emissions. It is therefore important to include biogas purification steps upstream of its final use processes. This review is aimed at presenting the scientific and technical state-of-theart in biogas purification processes. Both mature, already-applied and promising, under-development technologies are reported and described here. © 2008 Society of Chemical Industry and John Wiley & Sons, Ltd

Cancer-associated regulation of alternative splicing.

Abstract: Alternative splicing of pre-mRNA increases the diversity of protein functions Here we show that about half of all active alternative splicing events in ovarian and breast tissues are changed in tumors, and many seem to be regulated by a single factor; sequence analysis revealed binding sites for the RNA binding protein FOX2 downstream of one-third of the exons skipped in cancer High-resolution analysis of FOX2 binding sites defined the precise positions relative to alternative exons at which the protein may function as either a silencer or an enhancer Most of the identified targets were shifted in the same direction by FOX2 depletion in cell lines as they were in breast and ovarian cancer tissues Notably, we found expression of FOX2 itself is downregulated in ovarian cancer and its splicing is altered in breast cancer samples These results suggest that the decreased expression of FOX2 in cancer tissues modulates splicing and controls proliferation

Plant antimicrobial agents and their effects on plant and human pathogens.

Abstract: To protect themselves, plants accumulate an armoury of antimicrobial secondary metabolites. Some metabolites represent constitutive chemical barriers to microbial attack (phytoanticipins) and others inducible antimicrobials (phytoalexins). They are extensively studied as promising plant and human disease-controlling agents. This review discusses the bioactivity of several phytoalexins and phytoanticipins defending plants against fungal and bacterial aggressors and those with antibacterial activities against pathogens affecting humans such as Pseudomonas aeruginosa and Staphylococcus aureus involved in respiratory infections of cystic fibrosis patients. The utility of plant products as “antibiotic potentiators” and “virulence attenuators” is also described as well as some biotechnological applications in phytoprotection.

Towards Establishing Dietary Reference Intakes for Eicosapentaenoic and Docosahexaenoic Acids

Abstract: There is considerable interest in the impact of (n-3) long-chain PUFA in mitigating the morbidity and mortality caused by chronic diseases. In 2002, the Institute of Medicine concluded that insufficient data were available to define Dietary Reference Intakes (DRI) for eicosapentaenoic acid (EPA) or docosahexaenoic acid (DHA), noting only that EPA and DHA could contribute up to 10% toward meeting the Adequate Intake for alpha-linolenic acid. Since then, substantial new evidence has emerged supporting the need to reassess this recommendation. Therefore, the Technical Committee on Dietary Lipids of the International Life Sciences Institute North America sponsored a workshop on 4-5 June 2008 to consider whether the body of evidence specific to the major chronic diseases in the United States--coronary heart disease (CHD), cancer, and cognitive decline--had evolved sufficiently to justify reconsideration of DRI for EPA+DHA. The workshop participants arrived at these conclusions: 1) consistent evidence from multiple research paradigms demonstrates a clear, inverse relation between EPA+DHA intake and risk of fatal (and possibly nonfatal) CHD, providing evidence that supports a nutritionally achievable DRI for EPA+DHA between 250 and 500 mg/d; 2) because of the demonstrated low conversion from dietary ALA, protective tissue levels of EPA+DHA can be achieved only through direct consumption of these fatty acids; 3) evidence of beneficial effects of EPA+DHA on cognitive decline are emerging but are not yet sufficient to support an intake level different from that needed to achieve CHD risk reduction; 4) EPA+DHA do not appear to reduce risk for cancer; and 5) there is no evidence that intakes of EPA+DHA in these recommended ranges are harmful.

Changes in muscle mass and strength after menopause.

Abstract: Menopause is associated with a natural decline in estrogen, that increases visceral fat mass, decreases bone mass density, muscle mass, and strength. This review will examine the role of menopause transition and associated decrease in hormonal status with regards to those changes. We will also overview the efficiency of physical exercise and nutrition on muscle subcharacteristics. Studying changes in muscle mass associated with menopause is important, because of the high number of postmenopausal women in developed countries and the related risk of physical incapacity. Among modifiable factors, low physical activity and protein intakes are the best contributors to sarcopenia and the loss of strength in postmenopausal women. On the other hand, some biological factors, namely oxidative stress, inflammation, estrogen and other hormone deficiency are predictors of these phenomena. Interestingly, some methods have the potential to attenuate the loss of muscle mass and strength such as exercise, and supplement intake.

Control of alternative splicing through siRNA-mediated transcriptional gene silencing.

Abstract: When targeting promoter regions, small interfering RNAs (siRNAs) trigger a previously proposed pathway known as transcriptional gene silencing by promoting heterochromatin formation. Here we show that siRNAs targeting intronic or exonic sequences close to an alternative exon regulate the splicing of that exon. The effect occurred in hepatoma and HeLa cells with siRNA antisense strands designed to enter the silencing pathway, suggesting hybridization with nascent pre-mRNA. Unexpectedly, in HeLa cells the sense strands were also effective, suggesting that an endogenous antisense transcript, detectable in HeLa but not in hepatoma cells, acts as a target. The effect depends on Argonaute-1 and is counterbalanced by factors favoring chromatin opening or transcriptional elongation. The increase in heterochromatin marks (dimethylation at Lys9 and trimethylation at Lys27 of histone H3) at the target site, the need for the heterochromatin-associated protein HP1alpha and the reduction in RNA polymerase II processivity suggest a mechanism involving the kinetic coupling of transcription and alternative splicing.

Dressed collective qubit states and the Tavis-Cummings model in circuit QED.

Abstract: We present an ideal realization of the Tavis-Cummings model in the absence of atom number and coupling fluctuations by embedding a discrete number of fully controllable superconducting qubits at fixed positions into a transmission line resonator. Measuring the vacuum Rabi mode splitting with one, two, and three qubits strongly coupled to the cavity field, we explore both bright and dark dressed collective multiqubit states and observe the discrete square root N scaling of the collective dipole coupling strength. Our experiments demonstrate a novel approach to explore collective states, such as the W state, in a fully globally and locally controllable quantum system. Our scalable approach is interesting for solid-state quantum information processing and for fundamental multiatom quantum optics experiments with fixed atom numbers.

Predictors of cerebral arteriopathy in children with arterial ischemic stroke: results of the International Pediatric Stroke Study.

Abstract: Background— Cerebral arteriopathies, including an idiopathic focal cerebral arteriopathy of childhood (FCA), are common in children with arterial ischemic stroke and strongly predictive of recurrence. To better understand these lesions, we measured predictors of arteriopathy within a large international series of children with arterial ischemic stroke. Methods and Results— Between January 2003 and July 2007, 30 centers within the International Pediatric Stroke Study enrolled 667 children (age, 29 days to 19 years) with arterial ischemic stroke and abstracted clinical and radiographic data. Cerebral arteriopathy and its subtypes were defined using published definitions; FCA was defined as cerebral arterial stenosis not attributed to specific diagnoses such as moyamoya, arterial dissection, vasculitis, or postvaricella angiopathy. We used multivariate logistic regression techniques to determine predictors of arteriopathy and FCA among those subjects who received vascular imaging. Of 667 subjects, 525 had kn...

A New Two-Photon-Sensitive Block Copolymer Nanocarrier

Abstract: Easily disrupted: Micelles of a new amphiphilic block copolymer that bear coumarin groups are sensitive to near infrared light by two-photon absorption of the chromophore. Disruption of the micelles under irradiation at 794 nm results in release of both photocleaved coumarin and encapsulated nile red from the hydrophobic core of micelle into aqueous solution, which results in opposing changes in fluorescence emission intensity.

Dispersive regime of circuit QED : Photon-dependent qubit dephasing and relaxation rates

Abstract: Superconducting electrical circuits can be used to study the physics of cavity quantum electrodynamics (QED) in new regimes, therefore realizing circuit QED. For quantum-information processing and quantum optics, an interesting regime of circuit QED is the dispersive regime, where the detuning between the qubit transition frequency and the resonator frequency is much larger than the interaction strength. In this paper, we investigate how nonlinear corrections to the dispersive regime affect the measurement process. We find that in the presence of pure qubit dephasing, photon population of the resonator used for the measurement of the qubit act as an effective heat bath, inducing incoherent relaxation and excitation of the qubit. Measurement thus induces both dephasing and mixing of the qubit, something that can reduce the quantum nondemolition aspect of the readout. Using quantum trajectory theory, we show that this heat bath can induce quantum jumps in the qubit state. Nonlinear effects can also reduce the achievable signal-to-noise ratio of a homodyne measurement of the voltage.

Sarcopenic/obesity and physical capacity in older men and women: data from the Nutrition as a Determinant of Successful Aging (NuAge)-the Quebec longitudinal Study.

Abstract: Sarcopenia and obesity have been independently associated with physical capacity impairments. However, few studies have investigated the impact of sarcopenic/obesity on physical capacity in older individuals using objective measures of physical capacity and body composition. This study included 904 older individuals aged between 68 and 82 years old. Body composition (fat mass (FM) and lean body mass (LBM) by dual-energy X-ray absorptiometry (DXA)), physical capacity (timed up and go, chair stands, walking speed at normal and fastest pace, and one leg stand), sum of reported chronic conditions and physical activity level were measured. A global physical capacity score was then calculated giving a maximal score of 20. Finally, four groups were created within genders based on sarcopenia and obesity ((i) nonsarcopenic/nonobese; (ii) sarcopenic/nonobese; (iii) nonsarcopenic/obese; (iv) sarcopenic/obese). The four groups were significantly different for the sit-to-stand test and the one leg stand test (P < 0.05) and only for the one leg stand test in women (P < 0.05). In both genders results for the global physical capacity score revealed that both obese groups (sarcopenic and nonsarcopenic) were similar (P = 0.14 in men and P = 0.19 in women) and had a lower global physical capacity score compared to nonsarcopenic/nonobese individuals (P < 0.05). In addition, sarcopenic women displayed a higher score than both obese nonsarcopenic and obese sarcopenic groups (P < 0.01). Sarcopenic/obese men and women do not display lower physical capacity compared to nonsarcopenic/obese individuals in this cohort of well-functioning older men and women. Obesity per se appears to contribute more to lower physical capacity than sarcopenia.

Workplace interventions for preventing work disability

Abstract: Work disability has serious consequences for all stakeholders and society. Workplace interventions are considered appropriate to facilitate return to work by reducing barriers to return to work, involving the collaboration of key stakeholders. The aim of this review is to determine the effectiveness of workplace interventions compared to usual care or clinical interventions on work-related outcomes and health outcomes; and to evaluate whether the effects differ when applied to musculoskeletal disorders, mental health problems, or other health conditions.

Ultrastrong coupling regime of cavity QED with phase-biased flux qubits

Abstract: We theoretically study a circuit QED architecture based on a superconducting flux qubit directly coupled to the center conductor of a coplanar waveguide transmission-line resonator. As already shown experimentally [A. A. Abdumalikov, Jr. et al., Phys. Rev. B 78, 180502(R) (2008)], the strong coupling regime of cavity QED can readily be achieved by optimizing the local inductance of the resonator in the vicinity of the qubit. In addition to yielding stronger coupling with respect to other proposals for flux qubit based circuit QED, this approach leads to a qubit-resonator coupling strength $g$ which does not scale as the area of the qubit but is proportional to the total inductance shared between the resonator and the qubit. Strong coupling can thus be attained while still minimizing sensitivity to flux noise. Finally, we show that by taking advantage of the large kinetic inductance of a Josephson junction in the center conductor of the resonator can lead to coupling energies of several tens of percent of the resonator frequency, reaching the ultrastrong coupling regime of cavity QED where the rotating-wave approximation breaks down. This should allow an on-chip implementation of the $E\ensuremath{\bigotimes}\ensuremath{\beta}$ Jahn-Teller model.

Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEs.

Abstract: Integrating and conjugative elements (ICEs) are one of the three principal types of self-transmissible mobile genetic elements in bacteria. ICEs, like plasmids, transfer via conjugation; but unlike plasmids and similar to many phages, these elements integrate into and replicate along with the host chromosome. Members of the SXT/R391 family of ICEs have been isolated from several species of gram-negative bacteria, including Vibrio cholerae, the cause of cholera, where they have been important vectors for disseminating genes conferring resistance to antibiotics. Here we developed a plasmid-based system to capture and isolate SXT/R391 ICEs for sequencing. Comparative analyses of the genomes of 13 SXT/R391 ICEs derived from diverse hosts and locations revealed that they contain 52 perfectly syntenic and nearly identical core genes that serve as a scaffold capable of mobilizing an array of variable DNA. Furthermore, selection pressure to maintain ICE mobility appears to have restricted insertions of variable DNA into intergenic sites that do not interrupt core functions. The variable genes confer diverse element-specific phenotypes, such as resistance to antibiotics. Functional analysis of a set of deletion mutants revealed that less than half of the conserved core genes are required for ICE mobility; the functions of most of the dispensable core genes are unknown. Several lines of evidence suggest that there has been extensive recombination between SXT/R391 ICEs, resulting in re-assortment of their respective variable gene content. Furthermore, our analyses suggest that there may be a network of phylogenetic relationships among sequences found in all types of mobile genetic elements.

Individual variation in reproductive costs of reproduction: high‐quality females always do better

Abstract: 1. Although life-history theory predicts substantial costs of reproduction, individuals often show positive correlations among life-history traits, rather than trade-offs. The apparent absence of reproductive costs may result from heterogeneity in individual quality. 2. Using detailed longitudinal data from three contrasted ungulate populations (mountain goats, Oreamnos americanus; bighorn sheep, Ovis canadensis; and roe deer, Capreolus capreolus), we assessed how individual quality affects the probability of detecting a cost of current reproduction on future reproduction for females. We used a composite measure of individual quality based on variations in longevity (all species), success in the last breeding opportunity before death (goats and sheep), adult mass (all species), and social rank (goats only). 3. In all species, high-quality females consistently had a higher probability of reproduction, irrespective of previous reproductive status. In mountain goats, we detected a cost of reproduction only after accounting for differences in individual quality. Only low-quality female goats were less likely to reproduce following years of breeding than of nonbreeding. Offspring survival was lower in bighorn ewes following years of successful breeding than after years when no lamb was produced, but only for low-quality females, suggesting that a cost of reproduction only occurred for low-quality females. 4. Because costs of reproduction differ among females, studies of life-history evolution must account for heterogeneity in individual quality.

Male personality, life‐history strategies and reproductive success in a promiscuous mammal

Abstract: Recent theoretical work suggests that personality is a component of life history, but links between personality and either age-dependent reproductive success or life-history strategy are yet to be established. Using quantitative genetic analyses on a long-term pedigree we estimated indices of boldness and docility for 105 bighorn sheep rams (Ovis canadensis), born between 1983 and 1999, and compared these indices to their reproductive history from 2 years of age until death. Docility and boldness were highly heritable and negatively genetically correlated. Docile and bold rams survived longer than indocile and shy rams. Docility and boldness had a weak negative effect on reproductive success early in life, but a strong positive effect on older rams. Our findings highlight an important role of personality on reproductive success and suggest that personality could be an important component of life-history strategy.

Prevalence of childhood sexual abuse and timing of disclosure in a representative sample of adults from Quebec.

Abstract: Objective: Our study sought to explore patterns of disclosure of child sexual abuse (CSA) in a sample of adult men and women. Method: A telephone survey conducted with a representative sample of adults (n = 804) from Quebec assessed the prevalence of CSA and disclosure patterns. Analyses were carried out to determine whether disclosure groups differed in terms of psychological distress and symptoms of posttraumatic stress, and a logistic regression was used to examine factors associated with prompt disclosure. Results: Prevalence of CSA was 22.1% for women and 9.7% for men. About 1 survivor out of 5 had never disclosed the abuse, with men more likely not to have told anyone, than women. Only 21.2% of adults reported prompt disclosure (within a month of the first abusive event), while 57.5% delayed disclosure (more than 5 years after the first episode). CSA victims who never disclosed the abuse and those who delayed disclosure were more likely to obtain scores of psychological distress and posttraumatic stress achieving clinical levels, compared with adults without a history of CSA. In the multivariate analysis, experiencing CSA involving a perpetrator outside the immediate family and being female were factors independently associated with prompt disclosure. Conclusion: A significant number of adult women and men reported experiencing CSA, and most victims attested to either not disclosing or significantly delaying abuse disclosure. Language: en