Université de Sherbrooke

About: Université de Sherbrooke is a education organization based out in Sherbrooke, Quebec, Canada. It is known for research contribution in the topics: Population & Receptor. The organization has 14922 authors who have published 28783 publications receiving 792511 citations. The organization is also known as: Universite de Sherbrooke & Sherbrooke University.

First results on survival from a large Phase 3 clinical trial of an autologous dendritic cell vaccine in newly diagnosed glioblastoma.

Abstract: Following publication of the original article [1], the authors reported an error in the spelling of one of the author names. In this Correction the incorrect and correct author names are indicated and the author name has been updated in the original publication. The authors also reported an error in the Methods section of the original article. In this Correction the incorrect and correct versions of the affected sentence are indicated. The original article has not been updated with regards to the error in the Methods section.

PhageTerm: a tool for fast and accurate determination of phage termini and packaging mechanism using next-generation sequencing data.

Abstract: The worrying rise of antibiotic resistance in pathogenic bacteria is leading to a renewed interest in bacteriophages as a treatment option. Novel sequencing technologies enable description of an increasing number of phage genomes, a critical piece of information to understand their life cycle, phage-host interactions, and evolution. In this work, we demonstrate how it is possible to recover more information from sequencing data than just the phage genome. We developed a theoretical and statistical framework to determine DNA termini and phage packaging mechanisms using NGS data. Our method relies on the detection of biases in the number of reads, which are observable at natural DNA termini compared with the rest of the phage genome. We implemented our method with the creation of the software PhageTerm and validated it using a set of phages with well-established packaging mechanisms representative of the termini diversity, i.e. 5′cos (Lambda), 3′cos (HK97), pac (P1), headful without a pac site (T4), DTR (T7) and host fragment (Mu). In addition, we determined the termini of nine Clostridium difficile phages and six phages whose sequences were retrieved from the Sequence Read Archive. PhageTerm is freely available (https://sourceforge.net/projects/phageterm), as a Galaxy ToolShed and on a Galaxy-based server (https://galaxy.pasteur.fr).

Measuring senescence in wild animal populations: towards a longitudinal approach

Abstract: Summary 1A major current challenge in ageing research is to understand why senescence rates vary between individuals, populations and species in wild populations. 2Recent studies clearly illustrate that senescent declines in key demographic and life-history traits can be observed in many wild animal systems. 3Here, we summarize the key challenges facing researchers working to understand senescence in the wild. We concentrate on: (i) limited data availability, (ii) the substantial individual heterogeneity typical of wild populations, (iii) incomplete capture histories, and (iv) trade-offs across the life span. 4We discuss analytical methods to overcome these challenges. We advocate the use of Capture–Mark–Recapture models to remove likely bias associated with re-sampling rates of less than one. We also illustrate that ageing trajectories may vary between different traits in wild populations. Wherever possible, researchers should examine ageing patterns in multiple traits. 5Numerous models are available to describe the rate and shape of senescence in free-living populations, but there is currently little consensus regarding which is most appropriate in analyses of wild organisms. 6We argue that only longitudinal studies of marked or recognizable individuals provide reliable sources of information in the study of senescence. Senescence is a within-individual process and only longitudinal studies allow researchers to separate within-individual ageing patterns from between-individual heterogeneity. 7We examine two analytical approaches to measure ageing using longitudinal data from wild populations: a jack-knifing approach, well-suited to modelling survival probability, and a mixed-effects model approach. Both methods control for sources of between-individual heterogeneity to allow more accurate measurement of within-individual ageing patterns.