University of Bordeaux

About: University of Bordeaux is a education organization based out in Bordeaux, France. It is known for research contribution in the topics: Population & Laser. The organization has 28811 authors who have published 55536 publications receiving 1619635 citations. The organization is also known as: UB.

Evaluating theories of drought‐induced vegetation mortality using a multimodel–experiment framework

Abstract: 'Summary' 305 I. 'Background' 305 II. 'Model–experiment approach' 306 III. 'Simulations of hydraulic failure and carbon starvation' 310 IV. 'On thresholds vs duration of stress as drivers of mortality' 311 V. 'Interdependence of hydraulic failure and carbon starvation' 314 VI. 'Next-generation, traditional, and empirical models' 316 VII. 'A path forward' 317 VIII. 'Conclusions' 318 'Acknowledgements' 318 References 318 Summary Model–data comparisons of plant physiological processes provide an understanding of mechanisms underlying vegetation responses to climate. We simulated the physiology of a pinon pine–juniper woodland (Pinus edulis–Juniperus monosperma) that experienced mortality during a 5 yr precipitation-reduction experiment, allowing a framework with which to examine our knowledge of drought-induced tree mortality. We used six models designed for scales ranging from individual plants to a global level, all containing state-of-the-art representations of the internal hydraulic and carbohydrate dynamics of woody plants. Despite the large range of model structures, tuning, and parameterization employed, all simulations predicted hydraulic failure and carbon starvation processes co-occurring in dying trees of both species, with the time spent with severe hydraulic failure and carbon starvation, rather than absolute thresholds per se, being a better predictor of impending mortality. Model and empirical data suggest that limited carbon and water exchanges at stomatal, phloem, and below-ground interfaces were associated with mortality of both species. The model–data comparison suggests that the introduction of a mechanistic process into physiology-based models provides equal or improved predictive power over traditional process-model or empirical thresholds. Both biophysical and empirical modeling approaches are useful in understanding processes, particularly when the models fail, because they reveal mechanisms that are likely to underlie mortality. We suggest that for some ecosystems, integration of mechanistic pathogen models into current vegetation models, and evaluation against observations, could result in a breakthrough capability to simulate vegetation dynamics.

Triggered Source of Single Photons based on Controlled Single Molecule Fluorescence

Abstract: We use the method of adiabatic following to prepare a single molecule in its fluorescing excited state. Spontaneous emission from this state gives rise to a single photon. With our current experimental conditions, up to 74% of the sweeps lead to the emission of a single photon. Since the adiabatic passage is done on command, the molecule performs as a high rate source of triggered photons. The experimental results are in quantitative agreement with quantum Monte Carlo simulations.

Tulip — A Huge Graph Visualization Framework

Abstract: The research by the information visualization community (“Info Viz”) shows clearly that using a visual representation of data-sets enables faster analysis by the end users. Several scientific reasons explain these results. First of all, the visual perception system is the most powerful of all the human perception systems. In the human brain, 70% of the receptors and 40% of the cortex are used for the vision process [27,34]. Furthermore, human beings are better at “recognition” tasks than at “memorization” tasks [10]. This implies that textual representations are less efficient than visual metaphors when one wants to analyze huge data-sets. This comes from the fact that reading is both a memorization task and a recognition task.

THE Geant4-DNA project

Abstract: The Geant4-DNA project proposes to develop an open-source simulation software based and fully included in the general-purpose Geant4 Monte-Carlo simulation toolkit. The main objective of this software is to simulate biological damages induced by ionizing radiations at the cellular and sub-cellular scale. This project was originally initiated by the European Space Agency for the prediction of the deleterious effects of radiations that may affect astronauts during future long duration space exploration missions. In this paper, the Geant4-DNA collaboration presents an overview of the whole on-going project, including its most recent developments that are available in the Geant4 toolkit since December 2009 (release 9.3), as well as an illustration example simulating the direct irradiation of a biological chromatin fiber. Expected extensions involving several research domains, such as particle physics, chemistry and cellular and molecular biology, within a fully interdisciplinary activity of the Geant4 collaboration are also discussed.