Institution
University of Bremen
Education•Bremen, Germany•
About: University of Bremen is a education organization based out in Bremen, Germany. It is known for research contribution in the topics: Population & Glacial period. The organization has 14563 authors who have published 37279 publications receiving 970381 citations. The organization is also known as: Universität Bremen.
Topics: Population, Glacial period, SCIAMACHY, Sea ice, Holocene
Papers published on a yearly basis
Papers
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TL;DR: The platform presented here provides a significant advancement in the ability to understand the spatiotemporal dynamics of metabolite production in live microbial colonies and communities.
Abstract: Integrating the governing chemistry with the genomics and phenotypes of microbial colonies has been a “holy grail” in microbiology. This work describes a highly sensitive, broadly applicable, and cost-effective approach that allows metabolic profiling of live microbial colonies directly from a Petri dish without any sample preparation. Nanospray desorption electrospray ionization mass spectrometry (MS), combined with alignment of MS data and molecular networking, enabled monitoring of metabolite production from live microbial colonies from diverse bacterial genera, including Bacillus subtilis, Streptomyces coelicolor, Mycobacterium smegmatis, and Pseudomonas aeruginosa. This work demonstrates that, by using these tools to visualize small molecular changes within bacterial interactions, insights can be gained into bacterial developmental processes as a result of the improved organization of MS/MS data. To validate this experimental platform, metabolic profiling was performed on Pseudomonas sp. SH-C52, which protects sugar beet plants from infections by specific soil-borne fungi [R. Mendes et al. (2011) Science 332:1097–1100]. The antifungal effect of strain SH-C52 was attributed to thanamycin, a predicted lipopeptide encoded by a nonribosomal peptide synthetase gene cluster. Our technology, in combination with our recently developed peptidogenomics strategy, enabled the detection and partial characterization of thanamycin and showed that it is a monochlorinated lipopeptide that belongs to the syringomycin family of antifungal agents. In conclusion, the platform presented here provides a significant advancement in our ability to understand the spatiotemporal dynamics of metabolite production in live microbial colonies and communities.
723 citations
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Vrije Universiteit Brussel1, Pierre-and-Marie-Curie University2, Université libre de Bruxelles3, University of Arizona4, Université catholique de Louvain5, École Normale Supérieure6, Katholieke Universiteit Leuven7, Spanish National Research Council8, University of Paris9, University of Bremen10, Centre national de la recherche scientifique11, Kyoto University12, University of Western Brittany13, French Alternative Energies and Atomic Energy Commission14
TL;DR: It is found that environmental factors are incomplete predictors of community structure and associations across plankton functional types and phylogenetic groups to be nonrandomly distributed on the network and driven by both local and global patterns.
Abstract: Species interaction networks are shaped by abiotic and biotic factors. Here, as part of the Tara Oceans project, we studied the photic zone interactome using environmental factors and organismal abundance profiles and found that environmental factors are incomplete predictors of community structure. We found associations across plankton functional types and phylogenetic groups to be nonrandomly distributed on the network and driven by both local and global patterns. We identified interactions among grazers, primary producers, viruses, and (mainly parasitic) symbionts and validated network-generated hypotheses using microscopy to confirm symbiotic relationships. We have thus provided a resource to support further research on ocean food webs and integrating biological components into ocean models.
717 citations
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TL;DR: In this paper, a review of the use of weighted site averages in indicator analysis is presented, showing that these have a high reliability and can complement or, in some cases, replace measurements to determine the values of environmental variables and monitor their change.
711 citations
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01 Jan 1996TL;DR: This chapter continues with a detailed computational study of the most powerful algorithm on 162 benchmark problems and discusses the suitability of the algorithm for either very large or very difficult JSP instances.
Abstract: In this chapter we give a survey on the GA approaches considered so far. We continue with a detailed computational study of the most powerful algorithm on 162 benchmark problems. Finally we discuss the suitability of the algorithm for either very large or very difficult JSP instances.
711 citations
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TL;DR: It is demonstrated that it is possible to predict the toxicity of a large series of MOx nanoparticles in the lung premised on semiconductor properties and an integrated in vitro/in vivo hazard ranking model premisedon oxidative stress.
Abstract: We demonstrate for 24 metal oxide (MOx) nanoparticles that it is possible to use conduction band energy levels to delineate their toxicological potential at cellular and whole animal levels. Among the materials, the overlap of conduction band energy (Ec) levels with the cellular redox potential (−4.12 to −4.84 eV) was strongly correlated to the ability of Co3O4, Cr2O3, Ni2O3, Mn2O3, and CoO nanoparticles to induce oxygen radicals, oxidative stress, and inflammation. This outcome is premised on permissible electron transfers from the biological redox couples that maintain the cellular redox equilibrium to the conduction band of the semiconductor particles. Both single-parameter cytotoxic as well as multi-parameter oxidative stress assays in cells showed excellent correlation to the generation of acute neutrophilic inflammation and cytokine responses in the lungs of C57 BL/6 mice. Co3O4, Ni2O3, Mn2O3, and CoO nanoparticles could also oxidize cytochrome c as a representative redox couple involved in redox ho...
702 citations
Authors
Showing all 14961 results
Name | H-index | Papers | Citations |
---|---|---|---|
Roger Y. Tsien | 163 | 441 | 138267 |
Klaus-Robert Müller | 129 | 764 | 79391 |
Ron Kikinis | 126 | 684 | 63398 |
Ulrich S. Schubert | 122 | 2229 | 85604 |
Andreas Richter | 110 | 769 | 48262 |
Michael Böhm | 108 | 755 | 66103 |
Juan Bisquert | 107 | 450 | 46267 |
John P. Sumpter | 101 | 266 | 46184 |
Jos Lelieveld | 100 | 570 | 37657 |
Michael Schulz | 100 | 759 | 50719 |
Peter Singer | 94 | 702 | 37128 |
Charles R. Tyler | 92 | 325 | 31724 |
John P. Burrows | 90 | 815 | 36169 |
Hans-Peter Kriegel | 89 | 444 | 73932 |
Harald Haas | 85 | 750 | 34927 |