scispace - formally typeset
Search or ask a question

Showing papers by "University of California, Davis published in 1998"


Book
28 Sep 1998
TL;DR: The authors combine theory and practice to make sophisticated methods of analysis accessible to researchers and practitioners working with widely different types of data and software in areas such as applied statistics, econometrics, marketing, operations research, actuarial studies, demography, biostatistics and quantitative social sciences.
Abstract: Students in both social and natural sciences often seek regression methods to explain the frequency of events, such as visits to a doctor, auto accidents, or new patents awarded. This book, now in its second edition, provides the most comprehensive and up-to-date account of models and methods to interpret such data. The authors combine theory and practice to make sophisticated methods of analysis accessible to researchers and practitioners working with widely different types of data and software in areas such as applied statistics, econometrics, marketing, operations research, actuarial studies, demography, biostatistics and quantitative social sciences. The new material includes new theoretical topics, an updated and expanded treatment of cross-section models, coverage of bootstrap-based and simulation-based inference, expanded treatment of time series, multivariate and panel data, expanded treatment of endogenous regressors, coverage of quantile count regression, and a new chapter on Bayesian methods.

4,849 citations


Journal ArticleDOI
TL;DR: For example, this paper found that men trade 45 percent more than women and earn annual risk-adjusted net returns that are 1.4 percent less than those earned by women, while women perform worse than men.
Abstract: Theoretical models of financial markets built on the assumption that some investors are overconfident yield one central prediction: overconfident investors will trade too much. We test this prediction by partitioning investors on the basis of a variable that provides a natural proxy for overconfidence--gender. Psychological research has established that men are more prone to overconfidence than women. Thus, models of investor overconfidence predict that men will trade more and perform worse than women. Using account data for over 35,000 households from a large discount brokerage firm, we analyze the common stock investments of men and women from February 1991 through January 1997. Consistent with the predictions of the overconfidence models, we document that men trade 45 percent more than women and earn annual risk-adjusted net returns that are 1.4 percent less than those earned by women. These differences are more pronounced between single men and single women; single men trade 67 percent more than single women and earn annual risk-adjusted net returns that are 2.3 percent less than those earned by single women.

3,803 citations


Journal ArticleDOI
TL;DR: In this paper, the authors studied toroidal compactification of Matrix theory, using ideas and results of non-commutative geometry, and argued that they correspond in supergravity to tori with constant background three-form tensor field.
Abstract: We study toroidal compactification of Matrix theory, using ideas and results of non-commutative geometry. We generalize this to compactification on the noncommutative torus, explain the classification of these backgrounds, and argue that they correspond in supergravity to tori with constant background three-form tensor field. The paper includes an introduction for mathematicians to the IKKT formulation of Matrix theory and its relation to the BFSS Matrix theory.

2,131 citations


Journal ArticleDOI
TL;DR: In this paper, a review of the properties of biomass relevant to combustion is briefly reviewed and the compositions of biomass among fuel types are variable, especially with respect to inorganic constituents important to the critical problems of fouling and slagging.

1,764 citations


Journal ArticleDOI
24 Sep 1998-Nature
TL;DR: It is shown here that a unique covalent-modification system is essential for autophagy to occur, the first report of a protein unrelated to ubiquitin that uses a ubiquitination-like conjugation system.
Abstract: Autophagy is a process for the bulk degradation of proteins, in which cytoplasmic components of the cell are enclosed by double-membrane structures known as autophagosomes for delivery to lysosomes or vacuoles for degradation1,2,3,4. This process is crucial for survival during starvation and cell differentiation. No molecules have been identified that are involved in autophagy in higher eukaryotes. We have isolated 14 autophagy-defective (apg) mutants of the yeast Saccharomyces cerevisiae5 and examined the autophagic process at the molecular level6,7,8,9. We show here that a unique covalent-modification system is essential for autophagy to occur. The carboxy-terminal glycine residue of Apg12, a 186-amino-acid protein, is conjugated to a lysine at residue 149 of Apg5, a 294-amino-acid protein. Of the apg mutants, we found that apg7 and apg10 were unable to form an Apg5/Apg12 conjugate. By cloning APG7, we discovered that Apg7 is a ubiquitin-E1-like enzyme. This conjugation can be reconstituted in vitro and depends on ATP. To our knowledge, this is the first report of a protein unrelated to ubiquitin that uses a ubiquitination-like conjugation system. Furthermore, Apg5 and Apg12 have mammalian homologues, suggesting that this new modification system is conserved from yeast to mammalian cells.

1,564 citations


Journal ArticleDOI
22 Oct 1998-Nature
TL;DR: The results show that weak to intermediate strength links are important in promoting community persistence and stability, and data on interaction strengths in natural food webs indicate that food-web interaction strengths are indeed characterized by many weak interactions and a few strong interactions.
Abstract: Our analysis indicates that much of the lower part of the tetrapodomorph stem lineage consisted of ‘osteolepiform’ fishes. The character attributes of this part of the stem lineage can be reconstructed with precision. Parallel evolution towards the morphology of a large predator, with reduced median fins and elaborate anterior dentition, occurred at about the same time in rhizodonts, tristichopterids, and elpistostegids+tetrapods (Fig. 4). The evolution of two latter clades, having extra synapomorphies, also paralleled each other more closely. The Tetrapoda thus arose out of one of several similar evolutionary ‘experiments’ with a large aquatic predator role. Closer study of these parallel radiations should cast much new light on the ecological background to the origin of tetrapods.

1,474 citations


Journal ArticleDOI
22 Jan 1998-Nature
TL;DR: The data reveal that NO2− may regulate inflammatory processes through oxidative mechanisms, perhaps by contributing to the tyrosine nitration and chlorination observed in vivo.
Abstract: Nitric oxide (.NO) plays a central role in the pathogenesis of diverse inflammatory and infectious disorders. The toxicity of .NO is thought to be engendered, in part, by its reaction with superoxide (O2.-), yielding the potent oxidant peroxynitrite (ONOO-). However, evidence for a role of ONOO- in vivo is based largely upon detection of 3-nitrotyrosine in injured tissues. We have recently demonstrated that nitrite (NO2-), a major end-product of .NO metabolism, readily promotes tyrosine nitration through formation of nitryl chloride (NO2Cl) and nitrogen dioxide (.NO2) by reaction with the inflammatory mediators hypochlorous acid (HOCl) or myeloperoxidase. We now show that activated human polymorphonuclear neutrophils convert NO2- into NO2Cl and .NO2 through myeloperoxidase-dependent pathways. Polymorphonuclear neutrophil-mediated nitration and chlorination of tyrosine residues or 4-hydroxyphenylacetic acid is enhanced by addition of NO2- or by fluxes of .NO. Addition of 15NO2- led to 15N enrichment of nitrated phenolic substrates, confirming its role in polymorphonuclear neutrophil-mediated nitration reactions. Polymorphonuclear neutrophil-mediated inactivation of endothelial cell angiotensin-converting enzyme was exacerbated by NO2-, illustrating the physiological significance of these reaction pathways to cellular dysfunction. Our data reveal that NO2- may regulate inflammatory processes through oxidative mechanisms, perhaps by contributing to the tyrosine nitration and chlorination observed in vivo.

1,450 citations


Journal ArticleDOI
TL;DR: Patients with bilateral damage to orbito-frontal cortex and unilateral damage in left dorsolateral prefrontal cortex performed similarly to individuals with Asperger's syndrome, performing well on simpler tests and showing deficits on tasks requiring more subtle social reasoning, such as the ability to recognize a faux pas.
Abstract: Theory of mind, the ability to make inferences about others' mental states, seems to be a modular cognitive capacity that underlies humans' ability to engage in complex social interaction. It develops in several distinct stages, which can be measured with social reasoning tests of increasing difficulty. Individuals with Asperger's syndrome, a mild form of autism, perform well on simpler theory of mind tests but show deficits on more developmentally advanced theory of mind tests. We tested patients with bilateral damage to orbito-frontal cortex (n = 5) and unilateral damage in left dorsolateral prefrontal cortex (n = 5) on a series of theory of mind tasks varying in difficulty. Bilateral orbito-frontal lesion patients performed similarly to individuals with Asperger's syndrome, performing well on simpler tests and showing deficits on tasks requiring more subtle social reasoning, such as the ability to recognize a faux pas. In contrast, no specific theory of mind deficits were evident in the unilateral dorsolateral frontal lesion patients. The dorsolateral lesion patients had difficulty only on versions of the tasks that placed demands on working memory.

1,391 citations


Journal ArticleDOI
TL;DR: In this article, the authors examine markets in which price-taking traders, a strategic-trading insider, and risk-averse marketmakers are overconfident and examine their effect on volatility and price quality.
Abstract: People are overconfident. Overconfidence affects financial markets. How depends on who in the market is overconfident and on how information is distributed. This paper examines markets in which price-taking traders, a strategic-trading insider, and risk-averse marketmakers are overconfident. Overconfidence increases expected trading volume, increases market depth, and decreases the expected utility of overconfident traders. Its effect on volatility and price quality depend on who is overconfident. Overconfident traders can cause markets to underreact to the information of rational traders. Markets also underreact to abstract, statistical, and highly relevant information, and they overreact to salient, anecdotal, and less relevant information.

1,317 citations


Journal ArticleDOI
TL;DR: PBC is a chronic cholestatic liver disease characterized by high-titer serum antimitochondrial autoantibodies (AMAs) and autoimmune-mediated destruction of small and medium-sized intrahepatic bile ducts as discussed by the authors.

1,289 citations


Journal ArticleDOI
TL;DR: Evidence is presented here showing that trehalose has a remarkably high glass-transition temperature (Tg), which makes this sugar useful in stabilization of biomolecules of use in human welfare and may explain the stability and longevity of anhydrobiotes that contain it.
Abstract: Numerous organisms are capable of surviving more or less complete dehydration. A common feature in their biochemistry is that they accumulate large amounts of disaccharides, the most common of which are sucrose and trehalose. Over the past 20 years, we have provided evidence that these sugars stabilize membranes and proteins in the dry state, most likely by hydrogen bonding to polar residues in the dry macromolecular assemblages. This direct interaction results in maintenance of dry proteins and membranes in a physical state similar to that seen in the presence of excess water. An alternative viewpoint has been proposed, based on the fact that both sucrose and trehalose form glasses in the dry state. It has been suggested that glass formation (vitrification) is in itself sufficient to stabilize dry biomaterials. In this review we present evidence that, although vitrification is indeed required, it is not in itself sufficient. Instead, both direct interaction and vitrification are required. Special properties have often been claimed for trehalose in this regard. In fact, trehalose has been shown by many workers to be remarkably (and sometimes uniquely) effective in stabilizing dry or frozen biomolecules, cells, and tissues. Others have not observed any such special properties. We review evidence here showing that trehalose has a remarkably high glass-transition temperature (Tg). It is not anomalous in this regard because it lies at the end of a continuum of sugars with increasing Tg. However, it is unusual in that addition of small amounts of water does not depress Tg, as in other sugars. Instead, a dihydrate crystal of trehalose forms, thereby shielding the remaining glassy trehalose from effects of the added water. Thus under less than ideal conditions such as high humidity and temperature, trehalose does indeed have special properties, which may explain the stability and longevity of anhydrobiotes that contain it. Further, it makes this sugar useful in stabilization of biomolecules of use in human welfare.

Journal ArticleDOI
TL;DR: In this article, a study was initiated in the Santa Monica Mountains to investigate the use of the Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) for providing improved maps of chaparral coupled with direct estimates of canopy attributes (eg. biomass, leaf area, fuel load).

Journal ArticleDOI
17 Sep 1998-Nature
TL;DR: It is shown that scrub jays remember ‘when’ food items are stored by allowing them to recover perishable ‘wax worms’ (wax-moth larvae) and non-perishable peanuts which they had previously cached in visuospatially distinct sites.
Abstract: The recollection of past experiences allows us to recall what a particular event was, and where and when it occurred, a form of memory that is thought to be unique to humans. It is known, however, that food-storing birds remember the spatial location and contents of their caches. Furthermore, food-storing animals adapt their caching and recovery strategies to the perishability of food stores, which suggests that they are sensitive to temporal factors. Here we show that scrub jays (Aphelocoma coerulescens) remember 'when' food items are stored by allowing them to recover perishable 'wax worms' (wax-moth larvae) and non-perishable peanuts which they had previously cached in visuospatially distinct sites. Jays searched preferentially for fresh wax worms, their favoured food, when allowed to recover them shortly after caching. However, they rapidly learned to avoid searching for worms after a longer interval during which the worms had decayed. The recovery preference of jays demonstrates memory of where and when particular food items were cached, thereby fulfilling the behavioural criteria for episodic-like memory in non-human animals.

Journal ArticleDOI
TL;DR: Direct comparison of PLFA and substrate utilization patterns indicated that Biolog patterns are highly selective, and do not reflect compositional changes in soil communities.
Abstract: Phospholipid fatty acid (PLFA) profiles provide a robust measure that can be used to fingerprint the structure of soil microbial communities, and measure their biomass. A replicated field trial, with gradients in substrate and O2 availability created by straw incorporation and flooding was used to test the ability of PLFA to discriminate soil microbial communities in different management regimes. Another objective was to test the usefulness, on a large scale, of some of the proposed interpretations of PLFA biomarkers. Using a direct gradient statistical analysis method, PLFA profiles were found to be very sensitive to flooding and straw treatments. Relative abundances of monounsaturated fatty acids were reduced with flooding and increased with added carbon, consistent with their proposed interpretations as indicators of aerobic conditions and high substrate availability. The cyclopropyl fatty acids were not useful as taxonomic indicators of respiratory type, although their responses were consistent with their proposed use as growth condition indicators. Branched fatty acids decreased, as a group, in response to high substrate conditions. A specific biomarker for Type II methanotrophs was not found in this rice soil, even under high carbon, low O2 conditions, which resulted in methane exposure in the soil. Direct comparison of PLFA and substrate utilization patterns indicated that Biolog patterns are highly selective, and do not reflect compositional changes in soil communities.

Journal ArticleDOI
TL;DR: In this paper, an improved version of a criterion based on the Akaike information criterion (AIC), termed AICc, is derived and examined as a way to choose the smoothing parameter.
Abstract: Summary. Many different methods have been proposed to construct nonparametric estimates of a smooth regression function, including local polynomial, (convolution) kernel and smoothing spline estimators. Each of these estimators uses a smoothing parameter to control the amount of smoothing performed on a given data set. In this paper an improved version of a criterion based on the Akaike information criterion (AIC), termed AICc, is derived and examined as a way to choose the smoothing parameter. Unlike plug-in methods, AICc can be used to choose smoothing parameters for any linear smoother, including local quadratic and smoothing spline estimators. The use of AICc avoids the large variability and tendency to undersmooth (compared with the actual minimizer of average squared error) seen when other 'classical' approaches (such as generalized cross-validation or the AIC) are used to choose the smoothing parameter. Monte Carlo simulations demonstrate that the AICc-based smoothing parameter is competitive with a plug-in method (assuming that one exists) when the plug-in method works well but also performs well when the plug-in approach fails or is unavailable.

Journal Article
TL;DR: In this article, the relative strengths of popular notions of security for public key encryption schemes are compared under chosen plaintext attack and two kinds of chosen ciphertext attack, and the goals of privacy and non-malleability are considered.
Abstract: We compare the relative strengths of popular notions of security for public key encryption schemes. We consider the goals of privacy and non-malleability, each under chosen plaintext attack and two kinds of chosen ciphertext attack. For each of the resulting pairs of definitions we prove either an implication (every scheme meeting one notion must meet the other) or a separation (there is a scheme meeting one notion but not the other, assuming the first notion can be met at all). We similarly treat plaintext awareness, a notion of security in the random oracle model. An additional contribution of this paper is a new definition of non-malleability which we believe is simpler than the previous one.

Journal ArticleDOI
TL;DR: The authors investigated whether earnings management around the time of the offering can explain a portion of the poor performance of seasoned equity offerings and found that earnings management during the year around the offering predicts both earnings changes and market-adjusted stock returns in the following year.

Journal ArticleDOI
TL;DR: A new model adapted and expanded from one proposed for the evolution of vertebrate major histocompatibility complex and immunoglobulin gene families is proposed resulting in evolution of individual R genes within a haplotype that emphasizes divergent selection acting on arrays of solvent-exposed residues in the LRR.
Abstract: Classical genetic and molecular data show that genes determining disease resistance in plants are frequently clustered in the genome. Genes for resistance (R genes) to diverse pathogens cloned from several species encode proteins that have motifs in common. These motifs indicate that R genes are part of signal-transduction systems. Most of these R genes encode a leucine-rich repeat (LRR) region. Sequences encoding putative solvent-exposed residues in this region are hypervariable and have elevated ratios of nonsynonymous to synonymous substitutions; this suggests that they have evolved to detect variation in pathogen-derived ligands. Generation of new resistance specificities previously had been thought to involve frequent unequal crossing-over and gene conversions. However, comparisons between resistance haplotypes reveal that orthologs are more similar than paralogs implying a low rate of sequence homogenization from unequal crossing-over and gene conversion. We propose a new model adapted and expanded from one proposed for the evolution of vertebrate major histocompatibility complex and immunoglobulin gene families. Our model emphasizes divergent selection acting on arrays of solvent-exposed residues in the LRR resulting in evolution of individual R genes within a haplotype. Intergenic unequal crossing-over and gene conversions are important but are not the primary mechanisms generating variation.

Journal ArticleDOI
TL;DR: Redundancy analysis ordination showed thatPLFA profiles from organic and conventional systems were significantly different from April to July, and measures of the microbial community and soil properties were seldom associated with the variation in the PLFA profiles.
Abstract: Phospholipid fatty acid (PLFA) profiles were measured in soils from organic, low-input, and conventional farming systems that are part of the long term Sustainable Agriculture Farming Systems (SAFS) Project. The farming systems differ in whether their source of fertilizer is mineral or organic, and in whether a winter cover crop is grown. Sustained increases in microbial biomass resulting from high organic matter inputs have been observed in the organic and low-input systems. PLFA profiles were compared to ascertain whether previously observed changes in biomass were accompanied by a change in the composition of the microbial community. In addition, the relative importance of environmental variables on PLFA profiles was determined. Redundancy analysis ordination showed that PLFA profiles from organic and conventional systems were significantly different from April to July. On ordination plots, PLFA profiles from the low-input system fell between organic and conventional systems on most sample dates. A group of fatty acids (i14:0, a15:0, 16:1ω7c, 16:1ω5c, 14:0, and 18:2ω6c) was enriched in the organic plots throughout the sampling period, and another group (10Me16:0, 2OH 16:1 and 10Me17:0) was consistently lower in relative abundance in the organic system. In addition, another group (15:0, a17:0, i16:0, 17:0, and 10Me18:0) was enriched over the short term in the organic plots after compost incorporation. The relative importance of various environmental variables in governing the composition of microbial communities could be ranked in the order: soil type > time > specific farming operation (e.g., cover crop incorporation or sidedressing with mineral fertilizer) > management system > spatial variation in the field. Measures of the microbial community and soil properties (including microbial biomass carbon and nitrogen, substrate induced respiration, basal respiration, potentially mineralizable nitrogen, soil nitrate and ammonium, and soil moisture) were seldom associated with the variation in the PLFA profiles.

Journal ArticleDOI
26 Jun 1998-Cell
TL;DR: The results suggest that LEC1 is an important regulator of embryo development that activates the transcription of genes required for both embryo morphogenesis and cellular differentiation.

Journal ArticleDOI
08 May 1998-Science
TL;DR: Three biodemographic insights--concerning the correlation of death rates across age, individual differences in survival chances, and induced alterations in age patterns of fertility and mortality--offer clues and suggest research on the failure of complicated systems, on new demographic equations for evolutionary theory, and on fertility-longevity interactions.
Abstract: Old-age survival has increased substantially since 1950 Death rates decelerate with age for insects, worms, and yeast, as well as humans This evidence of extended postreproductive survival is puzzling Three biodemographic insights—concerning the correlation of death rates across age, individual differences in survival chances, and induced alterations in age patterns of fertility and mortality—offer clues and suggest research on the failure of complicated systems, on new demographic equations for evolutionary theory, and on fertility-longevity interactions Nongenetic changes account for increases in human life-spans to date Explication of these causes and the genetic license for extended survival, as well as discovery of genes and other survival attributes affecting longevity, will lead to even longer lives

Journal ArticleDOI
TL;DR: A review of laboratory and field evidence supporting hydraulic lift can be found in this paper, where the authors discuss some of the consequences of this below-ground behavior for the ecology of plants.
Abstract: Hydraulic lift is the passive movement of water from roots into soil layers with lower water potential, while other parts of the root system in moister soil layers, usually at depth, are absorbing water. Here, we review the brief history of laboratory and field evidence supporting this phenomenon and discuss some of the consequences of this below-ground behavior for the ecology of plants. Hydraulic lift has been shown in a relatively small number of species (27 species of herbs, grasses, shrubs, and trees), but there is no fundamental reason why it should not be more common as long as active root systems are spanning a gradient in soil water potential (Ψs) and that the resistance to water loss from roots is low. While the majority of documented cases of hydraulic lift in the field are for semiarid and arid land species inhabiting desert and steppe environments, recent studies indicate that hydraulic lift is not restricted to these species or regions. Large quantities of water, amounting to an appreciable fraction of daily transpiration, are lifted at night. This temporary partial rehydration of upper soil layers provides a source of water, along with soil moisture deeper in the profile, for transpiration the following day and, under conditions of high atmospheric demand, can substantially facilitate water movement through the soil-plant-atmosphere system. Release of water into the upper soil layers has been shown to afford the opportunity for neighboring plants to utilize this source of water. Also, because soils tend to dry from the surface downward and nutrients are usually most plentiful in the upper soil layers, lifted water may provide moisture that facilitates favorable biogeochemical conditions for enhancing mineral nutrient availability, microbial processes, and the acquisition of nutrients by roots. Hydraulic lift may also prolong or enhance fine-root activity by keeping them hydrated. Such indirect benefits of hydraulic lift may have been the primary selective force in the evolution of this process. Alternatively, hydraulic lift may simply be the consequence of roots not possessing true rectifying properties (i.e., roots are leaky to water). Finally, the direction of water movement may also be downward or horizontal if the prevailing Ψs gradient so dictates, i.e., inverse, or lateral, hydraulic lift. Such downward movement through the root system may allow growth of roots in otherwise dry soil at depth, permitting the establishment of many phreatophytic species.

Journal ArticleDOI
TL;DR: A critique of the current state of knowledge about effects of Hg on wildlife is presented as an aid to identifying missing information and to planning research needed for conducting a complete assessment of HG risks to wildlife.
Abstract: Wildlife may be exposed to mercury (Hg) and methylmercury (MeHg) from a variety of environmental sources, including mine tailings, industrial effluent, agricultural drainwater, impoundments, and atmospheric deposition from electric power generation. Terrestrial and aquatic wildlife may be at risk from exposure to waterborne Hg and MeHg. The transformation of inorganic Hg by anaerobic sediment microorganisms in the water column produces MeHg, which bioaccumulates at successive trophic levels in the food chain. If high trophic level feeders, such as piscivorous birds and mammals, ingest sufficient MeHg in prey and drinking water, Hg toxicoses, including damage to nervous, excretory and reproductive systems, result. Currently accepted no observed adverse effect levels (NOAELs) for waterborne Hg in wildlife have been developed from the piscivorous model in which most dietary Hg is in the methyl form. Such model are not applicable to omnivores, insectivores, and other potentially affected groups, and have not incorpotated data from other important matrices, such as eggs and muscle. The purpose of this paper is to present a comprehensive review of the Hg literature as it relates to effects on wildlife, including previously understudied groups. We present a critique of the current state of knowledge about effects of Hg on wildlife as an aid to identifying missing information and to planning research needed for conducting a complete assessment of Hg risks to wildlife. This review summarizes the toxicity of Hg to birds and mammals, the mechanisms of Hg toxicity, the measurement of Hg in biota, and interpretation of residue data.

Journal ArticleDOI
TL;DR: Rules of tissue architecture elucidated in bone morphogenesis may provide insights into tissue engineering and be universally applicable for all organs/tissues, including bones and joints.
Abstract: Morphogenesis is the developmental cascade of pattern formation and body plan establishment, culminating in the adult form. It has formed the basis for the emerging discipline of tissue engineering, which uses principles of molecular developmental biology and morphogenesis gleaned through studies on inductive signals, responding stem cells, and the extracellular matrix to design and construct spare parts that restore function to the human body. Among the many organs in the body, bone has considerable powers for regeneration and is a prototype model for tissue engineering. Implantation of demineralized bone matrix into subcutaneous sites results in local bone induction. This model mimics sequential limb morphogenesis and has permitted the isolation of bone morphogens, such as bone morphogenetic proteins (BMPs), from demineralized adult bone matrix. BMPs initiate, promote, and maintain chondrogenesis and osteogenesis, but are also involved in the morphogenesis of organs other than bone. The symbiosis of the mechanisms underlying bone induction and differentiation is critical for tissue engineering and is governed by both biomechanics (physical forces) and context (microenvironment/extracellular matrix), which can be duplicated by biomimetic biomaterials such as collagens, hydroxyapatite, proteoglycans, and cell adhesion glycoproteins, including fibronectins and laminin. Rules of tissue architecture elucidated in bone morphogenesis may provide insights into tissue engineering and be universally applicable for all organs/tissues, including bones and joints.

Journal ArticleDOI
TL;DR: The framework and guidance is provided to allow radiation oncology physicists to design comprehensive and practical treatment planning QA programs for their clinics, and the scope of the QA needs for treatment planning is quite broad, encompassing image-based definition of patient anatomy.
Abstract: In recent years, the sophistication and complexity of clinical treatment planning and treatment planning systems has increased significantly, particularly including three-dimensional (3D) treatment planning systems, and the use of conformal treatment planning and delivery techniques. This has led to the need for a comprehensive set of quality assurance (QA) guidelines that can be applied to clinical treatment planning. This document is the report of Task Group 53 of the Radiation Therapy Committee of the American Association of Physicists in Medicine. The purpose of this report is to guide and assist the clinical medical physicist in developing and implementing a comprehensive but viable program of quality assurance for modern radiotherapy treatment planning. The scope of the QA needs for treatment planning is quite broad, encompassing image-based definition of patient anatomy, 3D beam descriptions for complex beams including multileaf collimator apertures, 3D dose calculation algorithms, and complex plan evaluation tools including dose volume histograms. The Task Group recommends an organizational framework for the task of creating a QA program which is individualized to the needs of each institution and addresses the issues of acceptance testing, commissioning the planning system and planning process, routine quality assurance, and ongoing QA of the planning process. This report, while not prescribing specific QA tests, provides the framework and guidance to allow radiation oncology physicists to design comprehensive and practical treatment planning QA programs for their clinics.

Journal ArticleDOI
TL;DR: It is shown that Mi is expressed in leaves, that aphid resistance is isolate-specific, and that susceptible tomato transformed with Mi is resistant to the same aphid isolates as the original resistant lines.
Abstract: Resistance against the aphid Macrosiphum euphorbiae previously was observed in tomato and attributed to a novel gene, designated Meu-1, tightly linked to the nematode resistance gene, Mi. Recent cloning of Mi allowed us to determine whether Meu-1 and Mi are the same gene. We show that Mi is expressed in leaves, that aphid resistance is isolate-specific, and that susceptible tomato transformed with Mi is resistant to the same aphid isolates as the original resistant lines. We conclude that Mi and Meu-1 are the same gene and that Mi mediates resistance against both aphids and nematodes, organisms belonging to different phyla. Mi is the first example of a plant resistance gene active against two such distantly related organisms. Furthermore, it is the first isolate-specific insect resistance gene to be cloned and belongs to the nucleotide-binding, leucine-rich repeat family of resistance genes.

Journal ArticleDOI
TL;DR: The Mi locus of tomato confers resistance to root knot nematodes, and three open reading frames were identified with similarity to cloned plant disease resistance genes, including Prf, a tomato gene required for resistance to Pseudomonas syringae.
Abstract: The Mi locus of tomato confers resistance to root knot nematodes. Tomato DNA spanning the locus was isolated as bacterial artificial chromosome clones, and 52 kb of contiguous DNA was sequenced. Three open reading frames were identified with similarity to cloned plant disease resistance genes. Two of them, Mi-1.1 and Mi-1.2, appear to be intact genes; the third is a pseudogene. A 4-kb mRNA hybridizing with these genes is present in tomato roots. Complementation studies using cloned copies of Mi-1.1 and Mi-1.2 indicated that Mi-1.2, but not Mi-1.1, is sufficient to confer resistance to a susceptible tomato line with the progeny of transformants segregating for resistance. The cloned gene most similar to Mi-1.2 is Prf, a tomato gene required for resistance to Pseudomonas syringae. Prf and Mi-1.2 share several structural motifs, including a nucleotide binding site and a leucine-rich repeat region, that are characteristic of a family of plant proteins, including several that are required for resistance against viruses, bacteria, fungi, and now, nematodes.

Journal ArticleDOI
TL;DR: The present study investigated the origins of cortical input to the rat perirhinal and postrhinal cortices and the lateral and medial subdivisions of the entorhinal cortex (LEA and MEA) by placing injections of retrograde tracers at several locations within each region.
Abstract: We have divided the cortical regions surrounding the rat hippocampus into three cytoarchitectonically discrete cortical regions, the perirhinal, the postrhinal, and the entorhinal cortices. These regions appear to be homologous to the monkey perirhinal, parahippocampal, and entorhinal cortices, respectively. The origin of cortical afferents to these regions is well-documented in the monkey but less is known about them in the rat. The present study investigated the origins of cortical input to the rat perirhinal (areas 35 and 36) and postrhinal cortices and the lateral and medial subdivisions of the entorhinal cortex (LEA and MEA) by placing injections of retrograde tracers at several locations within each region. For each experiment, the total numbers of retrogradely labeled cells (and cell densities) were estimated for 34 cortical regions. We found that the complement of cortical inputs differs for each of the five regions. Area 35 receives its heaviest input from entorhinal, piriform, and insular areas. Area 36 receives its heaviest projections from other temporal cortical regions such as ventral temporal association cortex. Area 36 also receives substantial input from insular and entorhinal areas. Whereas area 36 receives similar magnitudes of input from cortices subserving all sensory modalities, the heaviest projections to the postrhinal cortex originate in visual associational cortex and visuospatial areas such as the posterior parietal cortex. The cortical projections to the LEA are heavier than to the MEA and differ in origin. The LEA is primarily innervated by the perirhinal, insular, piriform, and postrhinal cortices. The MEA is primarily innervated by the piriform and postrhinal cortices, but also receives minor projections from retrosplenial, posterior parietal, and visual association areas.

Journal ArticleDOI
TL;DR: In this article, it was shown that the resolution of moduli space of ideal instantons parameterizes the instantons on non-commutative ℝ4, which is the Higgs branch of the theory of k D0-branes bound to N D4-brane by the expectation value of the B field.
Abstract: We show that the resolution of moduli space of ideal instantons parameterizes the instantons on noncommutative ℝ4. This moduli space appears to be the Higgs branch of the theory of k D0-branes bound to N D4-branes by the expectation value of the B field. It also appears as a regularized version of the target space of supersymmetric quantum mechanics arising in the light cone description of (2,0) superconformal theories in six dimensions.

Journal ArticleDOI
TL;DR: Alkali Deposits Investigation (ADI) as mentioned in this paper was a collaborative effort to understand the causes of unmanageable ash deposits in biomass-fired electric power boilers.