University of California, Santa Cruz

About: University of California, Santa Cruz is a education organization based out in Santa Cruz, California, United States. It is known for research contribution in the topics: Galaxy & Population. The organization has 15541 authors who have published 44120 publications receiving 2759983 citations. The organization is also known as: UCSC & UC, Santa Cruz.

Chromosome-scale shotgun assembly using an in vitro method for long-range linkage

Abstract: Long-range and highly accurate de novo assembly from short-read data is one of the most pressing challenges in genomics. Recently, it has been shown that read pairs generated by proximity ligation of DNA in chromatin of living tissue can address this problem, dramatically increasing the scaffold contiguity of assemblies. Here, we describe a simpler approach ("Chicago") based on in vitro reconstituted chromatin. We generated two Chicago data sets with human DNA and developed a statistical model and a new software pipeline ("HiRise") that can identify poor quality joins and produce accurate, long-range sequence scaffolds. We used these to construct a highly accurate de novo assembly and scaffolding of a human genome with scaffold N50 of 20 Mbp. We also demonstrated the utility of Chicago for improving existing assemblies by reassembling and scaffolding the genome of the American alligator. With a single library and one lane of Illumina HiSeq sequencing, we increased the scaffold N50 of the American alligator from 508 kbp to 10 Mbp.

Hydrogen-treated WO3 nanoflakes show enhanced photostability

Abstract: Here we report that photostability and photoactivity of WO3 for water oxidation can be simultaneously enhanced by controlled introduction of oxygen vacancies into WO3 in hydrogen atmosphere at elevated temperatures. In comparison to pristine WO3, the hydrogen-treated WO3 nanoflakes show an order of magnitude enhanced photocurrent, and more importantly, exhibit extraordinary stability for water oxidation without loss of photoactivity for at least seven hours. The enhanced photostability is attributed to the formation of substoichiometric WO3−x after hydrogen treatment, which is highly resistive to the re-oxidation and peroxo-species induced dissolution. This work constitutes the first example where WO3 can be stabilized for water oxidation in neutral medium without the need for oxygen evolution catalysts. The demonstration of electrochemically stable WO3 could open up new opportunities for WO3 based photoelectrochemical and photocatalytic applications.

Observation of a centrality-dependent dijet asymmetry in lead-lead collisions at √sNN=2.76 Tev with the ATLAS detector at the LHC

Abstract: By using the ATLAS detector, observations have been made of a centrality-dependent dijet asymmetry in the collisions of lead ions at the Large Hadron Collider. In a sample of lead-lead events with a per-nucleon center of mass energy of 2.76 TeV, selected with a minimum bias trigger, jets are reconstructed in fine-grained, longitudinally segmented electromagnetic and hadronic calorimeters. The transverse energies of dijets in opposite hemispheres are observed to become systematically more unbalanced with increasing event centrality leading to a large number of events which contain highly asymmetric dijets. This is the first observation of an enhancement of events with such large dijet asymmetries, not observed in proton-proton collisions, which may point to an interpretation in terms of strong jet energy loss in a hot, dense medium.