Institution
University of California, Santa Cruz
Education•Santa Cruz, California, United States•
About: University of California, Santa Cruz is a education organization based out in Santa Cruz, California, United States. It is known for research contribution in the topics: Galaxy & Population. The organization has 15541 authors who have published 44120 publications receiving 2759983 citations. The organization is also known as: UCSC & UC, Santa Cruz.
Topics: Galaxy, Population, Star formation, Redshift, Planet
Papers published on a yearly basis
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John N. Weinstein1, John N. Weinstein2, Eric A. Collisson3, Gordon B. Mills1 +376 more•Institutions (31)
TL;DR: The Pan-Cancer initiative compares the first 12 tumor types profiled by TCGA with a major opportunity to develop an integrated picture of commonalities, differences and emergent themes across tumor lineages.
Abstract: The Cancer Genome Atlas (TCGA) Research Network has profiled and analyzed large numbers of human tumors to discover molecular aberrations at the DNA, RNA, protein and epigenetic levels. The resulting rich data provide a major opportunity to develop an integrated picture of commonalities, differences and emergent themes across tumor lineages. The Pan-Cancer initiative compares the first 12 tumor types profiled by TCGA. Analysis of the molecular aberrations and their functional roles across tumor types will teach us how to extend therapies effective in one cancer type to others with a similar genomic profile.
5,294 citations
Tohoku University1, University of Zurich2, Lawrence Berkeley National Laboratory3, Stanford University4, College of William & Mary5, University of Urbino6, CERN7, Budker Institute of Nuclear Physics8, University of California, Irvine9, Cornell University10, Argonne National Laboratory11, ETH Zurich12, Tata Institute of Fundamental Research13, Hillsdale College14, Spanish National Research Council15, Ohio State University16, University of Notre Dame17, Kent State University18, University of California, San Diego19, University of California, Berkeley20, University of Minnesota21, University of Alabama22, University of Helsinki23, Los Alamos National Laboratory24, California Institute of Technology25, George Washington University26, Syracuse University27, Lawrence Livermore National Laboratory28, Oklahoma State University–Stillwater29, University of Washington30, Max Planck Society31, Boston University32, University of California, Los Angeles33, Royal Holloway, University of London34, Université Paris-Saclay35, University of Pennsylvania36, University of Illinois at Urbana–Champaign37, University of Bristol38, University of Tokyo39, University of Delaware40, Carnegie Mellon University41, University of California, Santa Cruz42, Karlsruhe Institute of Technology43, Heidelberg University44, Florida State University45, University of Mainz46, University of Edinburgh47, Brookhaven National Laboratory48, Durham University49, University of Lausanne50, Massachusetts Institute of Technology51, University of Southampton52, Nagoya University53, University of Oxford54, Northwestern University55, University of British Columbia56, Columbia University57, Lund University58, University of Sheffield59, University of California, Santa Barbara60, Iowa State University61, University of Alberta62, University of Cambridge63
TL;DR: This biennial Review summarizes much of Particle Physics using data from previous editions, plus 2205 new measurements from 667 papers, and features expanded coverage of CP violation in B mesons and of neutrino oscillations.
Abstract: This biennial Review summarizes much of Particle Physics. Using data from previous editions, plus 2205 new measurements from 667 papers, we list, evaluate, and average measured properties of gauge bosons, leptons, quarks, mesons, and baryons. We also summarize searches for hypothetical particles such as Higgs bosons, heavy neutrinos, and supersymmetric particles. All the particle properties and search limits are listed in Summary Tables. We also give numerous tables, figures, formulae, and reviews of topics such as the Standard Model, particle detectors, probability, and statistics. This edition features expanded coverage of CP violation in B mesons and of neutrino oscillations. For the first time we cover searches for evidence of extra dimensions (both in the particle listings and in a new review). Another new review is on Grand Unified Theories. A booklet is available containing the Summary Tables and abbreviated versions of some of the other sections of this full Review. All tables, listings, and reviews (and errata) are also available on the Particle Data Group website: http://pdg.lbl.gov.
5,143 citations
Ewan Birney, John A. Stamatoyannopoulos1, Anindya Dutta2, Roderic Guigó3 +317 more•Institutions (44)
TL;DR: Functional data from multiple, diverse experiments performed on a targeted 1% of the human genome as part of the pilot phase of the ENCODE Project are reported, providing convincing evidence that the genome is pervasively transcribed, such that the majority of its bases can be found in primary transcripts.
Abstract: We report the generation and analysis of functional data from multiple, diverse experiments performed on a targeted 1% of the human genome as part of the pilot phase of the ENCODE Project. These data have been further integrated and augmented by a number of evolutionary and computational analyses. Together, our results advance the collective knowledge about human genome function in several major areas. First, our studies provide convincing evidence that the genome is pervasively transcribed, such that the majority of its bases can be found in primary transcripts, including non-protein-coding transcripts, and those that extensively overlap one another. Second, systematic examination of transcriptional regulation has yielded new understanding about transcription start sites, including their relationship to specific regulatory sequences and features of chromatin accessibility and histone modification. Third, a more sophisticated view of chromatin structure has emerged, including its inter-relationship with DNA replication and transcriptional regulation. Finally, integration of these new sources of information, in particular with respect to mammalian evolution based on inter- and intra-species sequence comparisons, has yielded new mechanistic and evolutionary insights concerning the functional landscape of the human genome. Together, these studies are defining a path for pursuit of a more comprehensive characterization of human genome function.
5,091 citations
Book•
01 Jan 2003TL;DR: In this article, the authors present concepts and ways of understanding the cultural nature of human development and the transformation of participation in cultural activities in families and communities, as well as the transition in individuals' roles in their communities.
Abstract: 1. Orienting concepts and ways of understanding the cultural nature of human development 2. Development as transformation of participation in cultural activities 3. Individuals, generations and dynamic cultural communities 4. Child rearing in families and communities 5. Developmental transitions in individuals' roles in their communities 6. Interdependence and autonomy 7. Thinking with the tools and institutions of culture 8. Learning through guided participation in cultural endeavours 9. Cultural change and relations among communities
5,048 citations
Massachusetts Institute of Technology1, Broad Institute2, University of California, Los Angeles3, University of British Columbia4, Baylor College of Medicine5, Howard Hughes Medical Institute6, University of Washington7, Ludwig Institute for Cancer Research8, University of California, San Francisco9, University of Connecticut10, University of Zagreb11, University of Texas at Austin12, Washington University in St. Louis13, University of Queensland14, Harvard University15, Cold Spring Harbor Laboratory16, University of Southern California17, University of California, Santa Cruz18, Simon Fraser University19, Morgridge Institute for Research20, University of Texas at Dallas21, National Institutes of Health22
TL;DR: It is shown that disease- and trait-associated genetic variants are enriched in tissue-specific epigenomic marks, revealing biologically relevant cell types for diverse human traits, and providing a resource for interpreting the molecular basis of human disease.
Abstract: The reference human genome sequence set the stage for studies of genetic variation and its association with human disease, but epigenomic studies lack a similar reference. To address this need, the NIH Roadmap Epigenomics Consortium generated the largest collection so far of human epigenomes for primary cells and tissues. Here we describe the integrative analysis of 111 reference human epigenomes generated as part of the programme, profiled for histone modification patterns, DNA accessibility, DNA methylation and RNA expression. We establish global maps of regulatory elements, define regulatory modules of coordinated activity, and their likely activators and repressors. We show that disease- and trait-associated genetic variants are enriched in tissue-specific epigenomic marks, revealing biologically relevant cell types for diverse human traits, and providing a resource for interpreting the molecular basis of human disease. Our results demonstrate the central role of epigenomic information for understanding gene regulation, cellular differentiation and human disease.
5,037 citations
Authors
Showing all 15733 results
| Name | H-index | Papers | Citations |
|---|---|---|---|
| David J. Schlegel | 193 | 600 | 193972 |
| David R. Williams | 178 | 2034 | 138789 |
| John R. Yates | 177 | 1036 | 129029 |
| David Haussler | 172 | 488 | 224960 |
| Evan E. Eichler | 170 | 567 | 150409 |
| Anton M. Koekemoer | 168 | 1127 | 106796 |
| Mark Gerstein | 168 | 751 | 149578 |
| Alexander S. Szalay | 166 | 936 | 145745 |
| Charles M. Lieber | 165 | 521 | 132811 |
| Jorge E. Cortes | 163 | 2784 | 124154 |
| M. Razzano | 155 | 515 | 106357 |
| Lars Hernquist | 148 | 598 | 88554 |
| Aaron Dominguez | 147 | 1968 | 113224 |
| Taeghwan Hyeon | 139 | 563 | 75814 |
| Garth D. Illingworth | 137 | 505 | 61793 |