Showing papers by "University of Hohenheim published in 2003"
TL;DR: In this paper, water, aqueous methanol, and ethanol extracts of freeze-dried leaves of Moringa oleifera Lam. from different agroclimatic regions were examined for radical scavenging capacities and antioxidant activities.
Abstract: Water, aqueous methanol, and aqueous ethanol extracts of freeze-dried leaves of Moringa oleifera Lam. from different agroclimatic regions were examined for radical scavenging capacities and antioxidant activities. All leaf extracts were capable of scavenging peroxyl and superoxyl radicals. Similar scavenging activities for different solvent extracts of each collection were found for the stable 1,1-diphenyl 2-picrylhydrazyl (DPPH•) radical. Among the three different moringa samples, both methanol and ethanol extracts of Indian origins showed the highest antioxidant activities, 65.1 and 66.8%, respectively, in the β-carotene−linoleic acid system. Nonetheless, increasing concentration of all the extracts had significantly (P < 0.05) increased reducing power, which may in part be responsible for their antioxidant activity. The major bioactive compounds of phenolics were found to be flavonoid groups such as quercetin and kaempferol. On the basis of the results obtained, moringa leaves are found to be a potenti...
1,358 citations
TL;DR: In this paper, the authors conducted a study to determine the effects of long-term addition of organic and inorganic fertiliser amendments at low rates on soil chemical and biological properties.
Abstract: The effect of organic and inorganic fertiliser amendments is often studied shortly after addition of a single dose to the soil but less is known about the long-term effects of amendments. We conducted a study to determine the effects of long-term addition of organic and inorganic fertiliser amendments at low rates on soil chemical and biological properties. Surface soil samples were taken from an experimental field site near Cologne, Germany in summer 2000. At this site, five different treatments were established in 1969: mineral fertiliser (NPK), crop residues removed (mineral only); mineral fertiliser with crop residues; manure 5.2 t ha −1 yr −1 ; sewage sludge 7.6 t ha −1 yr −1 or straw 4.0 t ha −1 yr −1 with 10 kg N as CaCN 2 t straw −1 . The organic amendments increased the C org content of the soil but had no significant effect on the dissolved organic C (DOC) content. The C/N ratio was highest in the straw treatment and lowest in the mineral only treatment. Of the enzymes studied, only protease activity was affected by the different amendments. It was highest after sewage amendment and lowest in the mineral only treatment. The ratios of Gram+ to Gram− bacteria and of bacteria to fungi, as determined by signature phospholipid fatty acids, were higher in the organic treatments than in the inorganic treatments. The community structure of bacteria and eukaryotic microorganisms was assessed by denaturing gradient gel electrophoresis (DGGE) and redundancy discriminate analyses of the DGGE banding patterns. While the bacterial community structure was affected by the treatments this was not the case for the eukaryotes. Bacterial and eukaryotic community structures were significantly affected by C org content and C/N ratio.
876 citations
TL;DR: Vigilance regarding the detection of possible rare cases of infection due to probiotics should be maintained, and isolates should be sent to reference centers for molecular characterization and confirmation.
Abstract: Lactobacilli and bifidobacteria are extremely rare causes of infection in humans, as are probiotics based on these organisms. This lack of pathogenicity extends across all age groups and to immunocompromised individuals. Strains used for new probiotics should be chosen from the commensal flora of humans and should not carry intrinsic resistance to antibiotics that would prevent treatment of a rare probiotic infection. Vigilance regarding the detection of possible rare cases of infection due to probiotics should be maintained, and isolates should be sent to reference centers for molecular characterization and confirmation.
514 citations
TL;DR: In this article, an in vitro enzymatic starch digestion method was applied in order to estimate the expected glycemic index in vivo based on the kinetics of starch hydrolysis in vitro.
383 citations
TL;DR: Depending on the prevailing ecological conditions in the different sourdough fermentations, only a few Lactobacillus species were found to be competitive and became dominant and a new species, L. mindensis, was detected.
Abstract: Four sourdoughs (A to D) were produced under practical conditions by using a starter mixture of three commercially available sourdough starters and a baker's yeast constitutively containing various species of lactic acid bacteria (LAB). The sourdoughs were continuously propagated until the composition of the LAB flora remained stable. Two LAB-specific PCR-denaturing gradient gel electrophoresis (DGGE) systems were established and used to monitor the development of the microflora. Depending on the prevailing ecological conditions in the different sourdough fermentations, only a few Lactobacillus species were found to be competitive and became dominant. In sourdough A (traditional process with rye flour), Lactobacillus sanfranciscensis and a new species, L. mindensis, were detected. In rye flour sourdoughs B and C, which differed in the process temperature, exclusively L. crispatus and L. pontis became the predominant species in sourdough B and L. crispatus, L. panis, and L. frumenti became the predominant species in sourdough C. On the other hand, in sourdough D (corresponding to sourdough C but produced with rye bran), L. johnsonii and L. reuteri were found. The results of PCR-DGGE were consistent with those obtained by culturing, except for sourdough B, in which L. fermentum was also detected. Isolates of the species L. sanfranciscensis and L. fermentum were shown by randomly amplified polymorphic DNA-PCR analysis to originate from the commercial starters and the baker's yeast, respectively.
363 citations
TL;DR: Results indicate that COR promotes bacterial virulence by activating the host's JA signaling pathway, and further suggest that the type III secretion system might also modify host defense by targeting theJA signaling pathway in susceptible tomato plants.
Abstract: Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000) causes bacterial speck disease on tomato. The pathogenicity of Pst DC3000 depends on both the type III secretion system that delivers virulence effector proteins into host cells and the phytotoxin coronatine (COR), which is thought to mimic the action of the plant hormone jasmonic acid (JA). We found that a JA-insensitive mutant (jai1) of tomato was unresponsive to COR and highly resistant to Pst DC3000, whereas host genotypes that are defective in JA biosynthesis were as susceptible to Pst DC3000 as wild-type (WT) plants. Treatment of WT plants with exogenous methyl-JA (MeJA) complemented the virulence defect of a bacterial mutant deficient in COR production, but not a mutant defective in the type III secretion system. Analysis of host gene expression using cDNA microarrays revealed that COR works through Jai1 to induce the massive expression of JA and wound response genes that have been implicated in defense against herbivores. Concomitant with the induction of JA and wound response genes, the type III secretion system and COR repressed the expression of pathogenesis-related (PR) genes in Pst DC3000-infected WT plants. Resistance of jai1 plants to Pst DC3000 was correlated with a high level of PR gene expression and reduced expression of JA/wound response genes. These results indicate that COR promotes bacterial virulence by activating the host's JA signaling pathway, and further suggest that the type III secretion system might also modify host defense by targeting the JA signaling pathway in susceptible tomato plants.
324 citations
TL;DR: Results indicate that FHB resistance was under the control of two major QTLs operating together with unknown numbers of minor genes, which should accelerate the development of resistant and locally adapted wheat cultivars.
Abstract: Fusarium head blight (FHB, scab) causes severe yield and quality losses, but the most serious concern is the mycotoxin contamination of cereal food and feed. The cultivation of resistant varieties may contribute to integrated control of this fungal disease. Breeding for FHB resistance by conventional selection is feasible, but tedious and expensive. The aim of this work was to detect QTLs for combined type I and type II resistance against FHB and estimate their effects in comparison to the QTLs identified previously for type II resistance. A population of 364, F1 derived doubled-haploid (DH) lines from the cross 'CM-82036' (resistant)/'Remus' (susceptible) was evaluated for components of FHB resistance during 2 years under field conditions. Plants were inoculated at anthesis with a conidial suspension of Fusarium graminearum or Fusarium culmorum. The crop was kept wet for 20 h after inoculation by mist-irrigation. Disease severity was assessed by visual scoring. Initial QTL analysis was performed on 239 randomly chosen DH lines and extended to 361 lines for putative QTL regions. Different marker types were applied, with an emphasis on PCR markers. Analysis of variance, as well as simple and composite interval mapping, revealed that two genomic regions were significantly associated with FHB resistance. The two QTLs on chromosomes 3B (Qfhs.ndsu-3BS) and 5A (Qfhs.ifa-5A) explained 29 and 20% of the phenotypic variance, respectively, for visual FHB severity. Qfhs.ndsu-3BS appeared to be associated mainly with resistance to fungal spread, and Qfhs.ifa-5A primarily with resistance to fungal penetration. Both QTL regions were tagged with flanking SSR markers. These results indicate that FHB resistance was under the control of two major QTLs operating together with unknown numbers of minor genes. Marker-assisted selection for these two major QTLs appears feasible and should accelerate the development of resistant and locally adapted wheat cultivars.
316 citations
TL;DR: The results of recent experimental studies support the assumption that alcohol significantly modulates the mucosal immune system of the gut and that alcohol contributes to the tendency in alcoholics to develop diarrhoea.
Abstract: Consumption of large quantities of alcoholic beverages leads to disturbances in the intestinal absorption of nutrients including several vitamins. The inhibition of the absorption of sodium and water caused by alcohol contributes to the tendency in alcoholics to develop diarrhoea. Excessive alcohol consumption (even a single episode) can result in duodenal erosions and bleeding and mucosal injury in the upper jejunum. An increased prevalence for bacterial overgrowth in the small intestine may contribute to functional and/or morphological abnormalities of this part of the gut and also to non-specific abdominal complaints in alcoholics. The mucosal damage caused by alcohol increases the permeability of the gut to macromolecules. This facilitates the translocation of endotoxin and other bacterial toxins from the gut lumen to the portal blood, thereby increasing the liver's exposure to these toxins and, consequently, the risk of liver injury. The results of recent experimental studies support the assumption that alcohol significantly modulates the mucosal immune system of the gut.
308 citations
TL;DR: The chemical composition and visual appearance of cactus fruits from the genera Opuntia and Hylocereus were investigated and an improved spectrophotometric method for pigment quantification was proposed.
Abstract: The chemical composition and visual appearance of cactus fruits from the genera Opuntia and Hylocereus were investigated. Colour properties were assessed in solutions with pH ranging from 1 to 8 and expressed as chroma, hue and colour shade. Between pH 3 and 7, all samples were stable as indicated by hue and chroma values. The colour shade of the red juice of Opuntia ficus-indica cv. 'Rossa' was in the range of red beet preparations hitherto most commonly used for colouring low-acid food commodities. Hylocereus was characterized by purplish hues, whereas the juice from O. ficus-indica cv. 'Gialla' displayed a yellow tonality. An improved spectrophotometric method for pigment quantification was proposed. Betacyanin contents were 525.3, 73.9 and 1.3 mg/l in juices from Hylocereus polyrhizus, Opuntia ficus-indica cv. 'Rossa' and O. ficus-indica cv. 'Gialla', whereas betaxanthins amounted to 48.3, 36.4 and 5.3 mg/l in O. ficus-indica cv. 'Gialla', O. ficus-indica cv. 'Rossa', and H. polyrhizus, respectively. Although the colourless fruits from O. ficus-indica cv. 'Bianca' and H. undatus could not be considered as a colour source, selected quality parameters were also investigated with respect to their nutritional value. To the best of our knowledge, this is the first report about the chemical quality parameters of H. polyrhizus and H. undatus.
286 citations
TL;DR: It is suggested that moringa leaf meal can be used to substitute up to 10% of dietary protein in Nile tilapia without significant reduction in growth.
282 citations
TL;DR: In this article, the authors investigated the effect of delayed harvest of miscanthus on biomass yield and quality and concluded that an early harvest of the plant maximises energy yield and finite primary energy savings per hectare.
TL;DR: In this article, a process for the combined recovery of pectin and phenolic compounds from apple pomace, the primary byproduct of apple juice production, was developed, which includes extraction of dried apple pOMace with diluted mineral acid and adsorption of phenolic constituents by a hydrophobic styrene-divinylbenzene copolymerisate.
Abstract: b ¨¨ Abstract A process for the combined recovery of pectin and phenolic compounds from apple pomace, the primary by-product of apple juice production, was developed. The process includes extraction of dried apple pomace with diluted mineral acid and adsorption of phenolic constituents by a hydrophobic styrene-divinylbenzene copolymerisate. After elution with methanol, the polyphenolics were concentrated in vacuo, stabilised by lyophilisation, and characterised by high-performance liquid chromatography. The predominant compounds were phloridzin, chlorogenic acid and quercetin glycosides. Adsorptive removal especially of oxidised phenolic compounds led to a considerable decolourisation of the pomace extracts, as revealed by determination of L*a*b* values, hue angle and chroma. Gelling properties of pectin were not adversely affected. While the polyphenolics recovered from apple pomace may be used as natural antioxidants or as functional food ingredients, extended fields of application may be obtained for decolorised, refined apple pectins. Furthermore, investigations on the phenolic composition of several New Zealand apple cultivars, of apple seeds, and on the effects of pomace drying on the stability of polyphenolics were carried out. 2002 Elsevier Science Ltd. All rights reserved.
TL;DR: In this paper, three ammonium transporter genes (OsAMT1;1, 1, 1;2 and 1;3; Oryza sativa ammonium transporters) were isolated and examined to study the regulation of ammonium uptake into rice roots.
Abstract: To study the regulation of ammonium uptake into rice roots, three ammonium transporter genes (OsAMT1;1, 1;2 and 1;3; Oryza sativa ammonium transporter) were isolated and examined. OsAMT1s belong to AMT1 family, containing 11 putative transmembrane-spanning domains. Southern blot analysis and screening of the rice genome database confirmed that with OsAMT1;1-1;3 the complete AMT1 family of rice had been isolated. Heterologous expression of OsAMT1s in the yeast Saccharomyces cerevisiae mutant 31019b showed that all three OsAMT1s exhibit ammonium transport activity. Northern blot analysis showed a distinct expression pattern for the three genes; more constitutive expression in shoots and roots for OsAMT1;1, root-specific and ammonium-inducible expression for OsAMT1;2, and root-specific and nitrogen-derepressible expression for OsAMT1;3. In situ mRNA detection revealed that OsAMT1;2 is expressed in the central cylinder and cell surface of root tips. This gene expression analysis revealed a distinct nitrogen-dependent regulation for AMTs in rice, differing from that in tomato or Arabidopsis:
21 Jun 2003-Journal of Comparative Physiology A-neuroethology Sensory Neural and Behavioral Physiology
TL;DR: The identification of HR2 homologues in two further lepidopteran species, the moths Antheraea pernyi and Bombyx mori, which share 86–88% of their amino acids, suggests that this unique receptor subtype may fulfill a special function in chemosensory neurons of insects.
Abstract: Candidate olfactory receptors of the moth Heliothis virescens were found to be extremely diverse from receptors of the fruitfly Drosophila melanogaster and the mosquito Anopheles gambiae, but there is one exception. The moth receptor type HR2 shares a rather high degree of sequence identity with one olfactory receptor type both from Drosophila (Dor83b) and from Anopheles (AgamGPRor7); moreover, in contrast to all other receptors, this unique receptor type is expressed in numerous antennal neurons. Here we describe the identification of HR2 homologues in two further lepidopteran species, the moths Antheraea pernyi and Bombyx mori, which share 86–88% of their amino acids. In addition, based on RT-PCR experiments HR2 homologues were discovered in antennal cDNA of the honey bee (Apis mellifera; Hymenoptera), the blowfly (Calliphora erythrocephala; Diptera) and the mealworm (Tenebrio molitor; Coleoptera). Comparison of all HR2-related receptors revealed a high degree of sequence conservation across insect orders. In situ hybridization of antennal sections from the bee and the blowfly support the notion that HR2-related receptors are generally expressed in a very large number of antennal cells. This, together with the high degree of conservation suggests that this unique receptor subtype may fulfill a special function in chemosensory neurons of insects.
TL;DR: The results indicate that the induction of AtNrt2.1 expression by sugars is unrelated to the main signaling mechanisms documented for sugar sensing in plants, such as regulation by sucrose, hexose transport, and hexokinase (HXK) sensing activity.
Abstract: Coordination between the activity of ion transport systems in the root and photosynthesis in the shoot is a main feature of the integration of ion uptake in the whole plant. However, the mechanisms that ensure this coordination are largely unknown at the molecular level. Here, we show that the expression of five genes that encode root NO(3)(-), NH(4)(+), and SO(4)(2-) transporters in Arabidopsis is regulated diurnally and stimulated by sugar supply. We also provide evidence that one Pi and one K(+) transporter also are sugar inducible. Sucrose, glucose, and fructose are able to induce expression of the ion transporter genes but not of the carboxylic acids malate and 2-oxoglutarate. For most genes investigated, induction by light and induction by sucrose are strongly correlated, indicating that they reflect the same regulatory mechanism (i.e., stimulation by photosynthates). The functional importance of this control is highlighted by the phenotype of the atnrt2 mutant of Arabidopsis. In this mutant, the deletion of the sugar-inducible NO(3)(-) transporter gene AtNrt2.1 is associated with the loss of the regulation of high-affinity root NO(3)(-) influx by light and sugar. None of the sugar analogs used (3-O-methylglucose, 2-deoxyglucose, and mannose) is able to mimic the inducing effect of sugars. In addition, none of the sugar-sensing mutants investigated (rsr1-1, sun6, and gin1-1) is altered in the regulation of AtNrt2.1 expression. These results indicate that the induction of AtNrt2.1 expression by sugars is unrelated to the main signaling mechanisms documented for sugar sensing in plants, such as regulation by sucrose, hexose transport, and hexokinase (HXK) sensing activity. However, the stimulation of AtNrt2.1 transcript accumulation by sucrose and glucose is abolished in an antisense AtHXK1 line, suggesting that HXK catalytic activity and carbon metabolism downstream of the HXK step are crucial for the sugar regulation of AtNrt2.1 expression.
TL;DR: SSR markers provide a powerful tool for grouping of germplasm and are a valuable complementation to field trials for identifying groups with satisfactory heterotic response.
Abstract: Heterotic groups and patterns are of fundamental importance in hybrid breeding of maize (Zea mays L.). The major goal of this study was to investigate the relationship between heterosis and genetic distance determined with simple sequence repeat (SSR) markers. The objectives of our research were to (i) compare the genetic diversity within and between seven tropical maize populations, (ii) test alternative hypotheses on the relationship between panmictic midparent heterosis (PMPH) and genetic distances determined with SSR markers, and (iii) evaluate the use of SSR markers for grouping of germplasm and establishing heterotic patterns in hybrid breeding of tropical maize. Published data of a diallel of seven tropical maize populations evaluated for agronomic traits in seven environments were reanalyzed to calculate PMPH in population hybrids. In addition, 48 individuals from each population were sampled and assayed with 85 SSR markers covering the entire maize genome. A total of 532 alleles in the 7 × 48 genotypes assayed were detected. The analysis of molecular variance (AMOVA) revealed that 89.8% of the variation was found within populations and only 10.2% between populations. The correlation between PMPH and the squared modified Roger's distance (MRD) based on SSR markers was significantly positive (P < 0.05) only for grain yield (r = 0.63). With SSR analyses, it was possible to assign Population 29 (Pop29) to the established Heterotic Group A and propose new heterotic groups (Pop25, Pop43). We conclude that SSR markers provide a powerful tool for grouping of germplasm and are a valuable complementation to field trials for identifying groups with satisfactory heterotic response.
TL;DR: In addition to their role as water channels, TIP transporters may play a role in equilibrating urea concentrations between different cellular compartments.
Abstract: Urea is the major nitrogen (N) form supplied as fertilizer in agricultural plant production and also an important N metabolite in plants. Because urea transport in plants is not well understood, the aim of the present study was to isolate urea transporter genes from the model plant Arabidopsis. Using heterologous complementation of a urea uptake-defective yeast (Saccharomyces cerevisiae) mutant allowed to isolate AtTIP1;1, AtTIP1;2, AtTIP2;1, and AtTIP4;1 from a cDNA library of Arabidopsis. These cDNAs encode channel-like tonoplast intrinsic proteins (TIPs) that belong to the superfamily of major intrinsic proteins (or aquaporins). All four genes conferred growth of a urea uptake-defective yeast mutant on 2 mm urea in a phloretin-sensitive and pH-independent manner. Uptake studies using 14C-labeled urea into AtTIP2;1-expressing Xenopus laevis oocytes demonstrated that AtTIP2;1 facilitated urea transport also in a pH-independent manner and with linear concentration dependency. Expression studies showed that AtTIP1;2, AtTIP2;1, and AtTIP4;1 genes were up-regulated during early germination and under N deficiency in roots but constitutively expressed in shoots. Subcellular localization of green fluorescent protein-fused AtTIPs indicated that AtTIP1;2, AtTIP2;1, and AtTIP4;1 were targeted mainly to the tonoplast and other endomembranes. Thus, in addition to their role as water channels, TIP transporters may play a role in equilibrating urea concentrations between different cellular compartments.
TL;DR: The results obtained in the present study confirm that peels originating from mango fruit processing are a promising source of phenolic compounds that might be recovered and used as natural antioxidants or functional food ingredients.
Abstract: Flavonol O- and xanthone C-glycosides were extracted from mango (Mangifera indica L. cv. "Tommy Atkins") peels and characterized by high-performance liquid chromatography-electrospray ionization mass spectrometry. Among the fourteen compounds analyzed, seven quercetin O-glycosides, one kaempferol O-glycoside, and four xanthone C-glycosides were found. On the basis of their fragmentation pattern, the latter were identified as mangiferin and isomangiferin and their respective galloyl derivatives. A flavonol hexoside with m/z 477 was tentatively identified as a rhamnetin glycoside, which to the best of our knowledge, has not yet been reported in mango peels. The results obtained in the present study confirm that peels originating from mango fruit processing are a promising source of phenolic compounds that might be recovered and used as natural antioxidants or functional food ingredients.
TL;DR: Wood biomass from poplar and aspen short rotation coppice (SRC) has good combustion properties compared to non wood solid bio fuels and fossil solid fuels, and weed control during establishing phase is essential for Populus -SRC in general.
Abstract: Woody biomass from poplar and aspen ( Populus sp.) short rotation coppice (SRC) has good combustion properties compared to non wood solid bio fuels and fossil solid fuels. This review compiles and discusses relevant literature on fuel quality and yield for Central European conditions. The most problematic quality parameter of woody biomass from Populus SRC is its high water content at harvest time (55–60%). Storing unchipped material on the field during summer is an efficient tool to lower it. In order to control other quality parameters—mainly nitrogen (N), potassium (K) and heavy metal contents but also yield—one has to take into account the physiological background of SRC. Important features are species/clone, age of sprouts, growth pattern, site and nutrient cycling. Maximum mean annual increment (MAI) occurs later than in willows. Therefore rotations should be longer than in willow: at least 6–7 years for poplars and,—due to differences in growth pattern,—10 to 12 years for aspen. Both results in MAIs of 10– 12 o.d.t. ha −1 yr −1 and reduced nutrient concentrations due to a lower share of branches and twigs in the harvested biomass. However, with elongated rotations costs rise because yet no automated (and thus cheap) harvest methods for large stem diameters were developed. Although sometimes ignored poplars are demanding concerning site characteristics. Basic requirements are good water (minimum 350 mm rainfall during growing season) and nutrient supplies, deep soils and favourable climatic conditions (average air temperature between June and September at least 14°C). Only aspen are partly suited for poorer conditions. For Populus -SRC in general weed control during establishing phase is essential.
TL;DR: In this paper, an extended version of Positive Mathematical Programming (PMP) is proposed to model the elasticity of substitution between activities in a regional production model, which leads to more plausible results than the standard PMP model.
Abstract: Positive Mathematical Programming (PMP) has become a popular method for regional production models. The standard approach estimates cost (or production) functions for each land-use activity separately from each other. This means that the same crop grown under two technologies is treated as if it were two separate crops, which may lead to unsatisfying results, for example, if agri-environmental programs are modeled. We present an extended version of PMP that leads to more plausible results than the standard version in such cases. The extended method is applicable to other problems where differences in the elasticity of substitution between activities are important.
TL;DR: The authors' data suggest that microbial functional diversity reached stability within 50 years' succession, explaining similarities in enzyme activity patterns in the sequences.
Abstract: Summary
We compared functional diversity in 6- to 150-year-old sites on two primary successional glacier forelands (Odenwinkelkees and Rotmoosferner, Austria) and related these changes to properties of their habitat in the soil (pH, soil organic matter, mineral nitrogen, phosphorus). Comparisons were made with land undisturbed for 9500 years immediately outside the glacier foreland. The functional diversity of the soil microflora was assessed based on microbial processes (N mineralization, ammonium oxidation, arginine deaminase) as well as on the activities of soil enzymes (protease, urease, xylanase, phosphatase, arylsulphatase). On both chronosequences, functional diversity (Shannon diversity index and evenness) and enzyme activity increased up to an age of 50 years, while older soils appeared to have reached a temporary steady state. The values of microbial biomass and enzyme activity were generally smaller in the Odenwinkel soils than in the Rotmoos sequence, indicating that primary input of carbon from plant growth was less. Functional diversity increased with increasing plant development and organic matter accumulation, explaining similarities in enzyme activity patterns in the sequences. The local climates might also have contributed to the magnitude of the changes. Our data suggest that microbial functional diversity reached stability within 50 years' succession.
TL;DR: A useful method, in vitro glycorandomization (IVG), to diversify the glycosylation patterns of complex natural products and apply chemoselective ligation to produce monoglycosylated vancomycins that rival vancomYcin.
Abstract: In nature, the attachment of sugars to small molecules is often used to mediate targeting, mechanism of action and/or pharmacology. As an alternative to pathway engineering or total synthesis, we report a useful method, in vitro glycorandomization (IVG), to diversify the glycosylation patterns of complex natural products. We have used flexible glycosyltransferases on nucleotide diphosphosugar (NDP-sugar) libraries to generate glycorandomized natural products and then applied chemoselective ligation to produce monoglycosylated vancomycins that rival vancomycin.
TL;DR: A fungi-specific PCR-denaturing gradient gel electrophoresis system was established to monitor the development of the yeast biota, and randomly amplified polymorphic DNA-PCR analysis revealed the presence of Candida humilis, Debaryomyces hansenii, Saccharomyces cerevisiae, and Saccharomers uvarum in sourdoughs.
Abstract: Four sourdoughs (A to D) were produced under practical conditions, using a starter obtained from a mixture of three commercially available sourdough starters and baker's yeast. The doughs were continuously propagated until the composition of the microbiota remained stable. A fungi-specific PCR-denaturing gradient gel electrophoresis (DGGE) system was established to monitor the development of the yeast biota. The analysis of the starter mixture revealed the presence of Candida humilis, Debaryomyces hansenii, Saccharomyces cerevisiae, and Saccharomyces uvarum. In sourdough A (traditional process with rye flour), C. humilis dominated under the prevailing fermentation conditions. In rye flour sourdoughs B and C, fermented at 30 and 40°C, respectively, S. cerevisiae became predominant in sourdough B, whereas in sourdough C the yeast counts decreased within a few propagation steps below the detection limit. In sourdough D, which corresponded to sourdough C in temperature but was produced with rye bran, Candida krusei became dominant. Isolates identified as C. humilis and S. cerevisiae were shown by randomly amplified polymorphic DNA-PCR analysis to originate from the commercial starters and the baker's yeast, respectively. The yeast species isolated from the sourdoughs were also detected by PCR-DGGE. However, in the gel, additional bands were visible. Because sequencing of these PCR fragments from the gel failed, cloning experiments with 28S rRNA amplicons obtained from rye flour were performed, which revealed Cladosporium sp., Saccharomyces servazii, S. uvarum, an unculturable ascomycete, Dekkera bruxellensis, Epicoccum nigrum, and S. cerevisiae. The last four species were also detected in sourdoughs A, B, and C.
TL;DR: It is established that PSA controls tumor cell growth and differentiation by interfering with NCAM signaling at cell-cell contacts, providing a mechanism for how PSA may promote the genesis and progression of highly aggressive PSA-NCAM-positive tumors.
Abstract: Polysialic acid (PSA), a carbohydrate polymer attached to the neural cell adhesion molecule (NCAM), promotes neural plasticity and tumor malignancy, but its mode of action is controversial. Here we establish that PSA controls tumor cell growth and differentiation by interfering with NCAM signaling at cell-cell contacts. Interactions between cells with different PSA and NCAM expression profiles were initiated by enzymatic removal of PSA and by ectopic expression of NCAM or PSA-NCAM. Removal of PSA from the cell surface led to reduced proliferation and activated extracellular signal-regulated kinase (ERK), inducing enhanced survival and neuronal differentiation of neuroblastoma cells. Blocking with an NCAM-specific peptide prevented these effects. Combinatorial transinteraction studies with cells and membranes with different PSA and NCAM phenotypes revealed that heterophilic NCAM binding mimics the cellular responses to PSA removal. In conclusion, our data demonstrate that PSA masks heterophilic NCAM signals, having a direct impact on tumor cell growth. This provides a mechanism for how PSA may promote the genesis and progression of highly aggressive PSA-NCAM-positive tumors.
TL;DR: In this article, the effects of thermal processing (blanching, pasteurization, sterilization) on trans-cis-isomerization of β-carotene in carrot juice produced on pilot plant scale and in bovine serum albumine and lecithine suspensions were studied.
TL;DR: A trend toward increased efficiency of direct selection under LN conditions was evident with decreasing grain yield at LN, and variations in genotype x N as well as G x L x N level interaction variances were significant in most experiments.
Abstract: Maize (Zea mays L.) cultivars with improved N-use efficiency would be beneficial for low-input production systems. Our objective was to estimate quantitative genetic parameters to optimize breeding programs for improving productivity under low N levels. Results of 21 field experiments with European breeding materials belonging to the flint and dent gene pool are presented. The study was performed during 1989 and 1999 at several locations in typical maize growing regions of Germany and France. All experiments were conducted at high (HN) and low (LN, no N fertilizer applied) N levels. Average grain yield was reduced by 37% at LN compared with HN. Coefficients of genotypic correlation between HN and LN were variable with an average of r G = 0.74 for grain yield and generally high for grain dry matter content. For grain yield, analyses of variance were computed from relative data, where plot values were expressed as percentage of the trial mean. Variances caused by genotype (G), G x location (L) interaction, and error effects were higher at LN compared with HN, with similar heritabilities at both N levels. For the untransformed data, components of variance were higher at HN than at LN. Genotype x N as well as G x L x N level interaction variances were significant in most experiments. Efficiency of improvement of grain yield at LN through indirect selection at HN was 70% compared with direct selection at LN. A trend toward increased efficiency of direct selection under LN conditions was evident with decreasing grain yield at LN.
TL;DR: It is provided first evidence that elevated CO2 can reduce soil aggregation at the scale from µm to mm scale, and that this can affect soil microfaunal populations.
Abstract: Nutrient-poor grassland on a silty clay loam overlying calcareous debris was exposed to elevated CO2 for six growing seasons. The CO2 exchange and productivity were persistently increased throughout the experiment, suggesting increases in soil C inputs. At the same time, elevated CO2 lead to increased soil moisture due to reduced evapotransporation. Measurements related to soil microflora did not indicate increased soil C fluxes under elevated CO2. Microbial biomass, soil basal respiration, and the metabolic quotient for CO2 (qCO2) were not altered significantly. PLFA analysis indicated no significant shift in the ratio of fungi to bacteria. 0.5 m KCl extractable organic C and N, indicators of changed DOC and DON concentrations, also remained unaltered. Microbial grazer populations (protozoa, bacterivorous and fungivorous nematodes, acari and collembola) and root feeding nematodes were not affected by elevated CO2. However, total nematode numbers averaged slightly lower under elevated CO2 (−16%, ns) and nematode mass was significantly reduced (−43%, P = 0.06). This reduction reflected a reduction in large-diameter nematodes classified as omnivorous and predacious. Elevated CO2 resulted in a shift towards smaller aggregate sizes at both micro- and macro-aggregate scales; this was caused by higher soil moisture under elevated CO2. Reduced aggregate sizes result in reduced pore neck diameters. Locomotion of large-diameter nematodes depends on the presence of large enough pores; the reduction in aggregate sizes under elevated CO2 may therefore account for the decrease in large nematodes. These animals are relatively high up the soil food web; this decline could therefore trigger top-down effects on the soil food web. The CO2 enrichment also affected the nitrogen cycle. The N stocks in living plants and surface litter increased at elevated CO2, but N in soil organic matter and microbes remained unaltered. Nitrogen mineralization increased markedly, but microbial N did not differ between CO2 treatments, indicating that net N immobilization rates were unaltered. In summary, this study did not provide evidence that soils and soil microbial communities are affected by increased soil C inputs under elevated CO2. On the contrary, available data (13C tracer data, minirhizotron observations, root ingrowth cores) suggests that soil C inputs did not increase substantially. However, we provide first evidence that elevated CO2 can reduce soil aggregation at the scale from µm to mm scale, and that this can affect soil microfaunal populations.
TL;DR: This study summarises the present knowledge on unrestrained decomposition of a corpse, combining results gained both in forensic medicine and in geosciences.
Abstract: The unrestrained decomposition of a corpse involves the consecutive processes of autolysis, putrefaction and decay. Ideally, decomposition is completed within the regular resting time (15-25 years) and leads to the entire skeletalisation of the corpse. Adipocere, a greyish fatty substance formed during decomposition, is regarded as a spontaneous inhibition of post-mortem changes; it makes the corpse almost entirely resistant to decomposition and makes it impossible to use the same graves again. This creates problems for local governments with regard to the generally growing demand for burial ground. Apart from corpse-specific characteristics (e.g. sex, age, physique, cause of death), method of burial (e.g. material of the coffin, depth of grave, individual or mass grave, clothing) and time of burial, the conditions of the resting place (geology, topography, soil properties and frequency of use, air, water, and heat budget), in particular, have a special impact on adipocere formation. This study summarises the present knowledge on this phenomenon, combining results gained both in forensic medicine and in geosciences.
TL;DR: Expression of OsAMT2;1 in an ammonium-uptake-defective yeast mutant showed that this gene encodes functional ammonium transporters, and a database search with the amino acid sequence showed that there are 10 putativeOsAMT genes in rice.
Abstract: To characterize ammonium transport pathways in rice, two cDNAs with high homology to MEP/AMT2-type ammonium transporters, OsAMT2;1 and OsAMT3;1, were isolated. Expression of OsAMT2;1 in an ammonium-uptake-defective yeast mutant showed that this gene encodes functional ammonium transporters. OsAMT2;1 was constitutively expressed in both roots and shoots irrespective of the supply of inorganic nitrogen to the medium, whereas OsAMT3;1 expression was relatively weak. A database search with the amino acid sequence of OsAMT2;1 showed that there are 10 putative OsAMT genes in rice, i.e. three each for OsAMT1, OsAMT2 and OsAMT3, respectively, and one for OsAMT4.
TL;DR: The relationships between the populations obtained by SSR analyses are in excellent agreement with pedigree information and SSR markers are a valuable complementation to field trials for identifying heterotic groups and can be used to introgress exotic germplasm systematically.
Abstract: Heterotic groups and patterns are of fundamental importance in hybrid breeding. The objectives of our research were to: (1) investigate the relationship of simple sequence repeats (SSR) based genetic distances between populations and panmictic midparent heterosis (PMPH) in a broad range of CIMMYT maize germplasm, (2) evaluate the usefulness of SSR markers for defining heterotic groups and patterns in subtropical germplasm, and (3) examine applications of SSR markers for broadening heterotic groups by systematic introgression of other germplasm. Published data of two diallels and one factorial evaluated for grain yield were re-analyzed to calculate the PMPH in population hybrids. Additionally, 20 pools and populations widely used in CIMMYT's breeding program were assayed with 83 SSR markers covering the entire maize genome. Correlations of squared modified Roger's distance (MRD2) and PMPH were mostly positive and significant, but adaption problems caused deviations in some cases. For intermediate- and early-maturity subtropical germplasm, two heterotic groups could be suggested consisting of a flint and dent composite. We concluded that the relationships between the populations obtained by SSR analyses are in excellent agreement with pedigree information. SSR markers are a valuable complementation to field trials for identifying heterotic groups and can be used to introgress exotic germplasm systematically.