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Showing papers by "University of Konstanz published in 2012"


Journal ArticleDOI
25 May 2012-Science
TL;DR: Here, it is shown that despite their widespread use, Rmerge values are poorly suited for determining the high-resolution limit and that current standard protocols discard much useful data, and a statistic is introduced that estimates the correlation of an observed data set with the underlying (not measurable) true signal.
Abstract: In macromolecular x-ray crystallography, refinement R values measure the agreement between observed and calculated data. Analogously, R(merge) values reporting on the agreement between multiple measurements of a given reflection are used to assess data quality. Here, we show that despite their widespread use, R(merge) values are poorly suited for determining the high-resolution limit and that current standard protocols discard much useful data. We introduce a statistic that estimates the correlation of an observed data set with the underlying (not measurable) true signal; this quantity, CC*, provides a single statistically valid guide for deciding which data are useful. CC* also can be used to assess model and data quality on the same scale, and this reveals when data quality is limiting model improvement.

1,689 citations


Journal ArticleDOI
TL;DR: The libFM as mentioned in this paper tool is a software implementation for factorization machines that features stochastic gradient descent (SGD) and alternating least-squares (ALS) optimization, as well as Bayesian inference using Markov Chain Monto Carlo (MCMC).
Abstract: Factorization approaches provide high accuracy in several important prediction problems, for example, recommender systems. However, applying factorization approaches to a new prediction problem is a nontrivial task and requires a lot of expert knowledge. Typically, a new model is developed, a learning algorithm is derived, and the approach has to be implemented.Factorization machines (FM) are a generic approach since they can mimic most factorization models just by feature engineering. This way, factorization machines combine the generality of feature engineering with the superiority of factorization models in estimating interactions between categorical variables of large domain. libFM is a software implementation for factorization machines that features stochastic gradient descent (SGD) and alternating least-squares (ALS) optimization, as well as Bayesian inference using Markov Chain Monto Carlo (MCMC). This article summarizes the recent research on factorization machines both in terms of modeling and learning, provides extensions for the ALS and MCMC algorithms, and describes the software tool libFM.

1,271 citations


Journal ArticleDOI
16 Mar 2012-Science
TL;DR: Knowledge of the structure of carlactone will be crucial for understanding the biology of strigolactones and may have applications in combating parasitic weeds.
Abstract: Germination of parasitic witchweeds depends on strigolactones, which also regulate plant branching and signal in the context of mycorrhizal symbioses. The biosynthetic pathways that lead to strigolactones are founded in carotenoid biosynthesis, but further steps have been obscure. Alder et al. (p. [1348][1]) have now identified a biochemical pathway that generates a strigolactone-like compound, carlactone, which shows biological actions similar to those of strigolactone. [1]: /lookup/doi/10.1126/science.1218094

725 citations


Journal ArticleDOI
TL;DR: The current practices in the information visualization research community are encapsulated and a different approach is provided to reaching decisions about what might be the most effective evaluation of a given information visualization.
Abstract: We take a new, scenario-based look at evaluation in information visualization. Our seven scenarios, evaluating visual data analysis and reasoning, evaluating user performance, evaluating user experience, evaluating environments and work practices, evaluating communication through visualization, evaluating visualization algorithms, and evaluating collaborative data analysis were derived through an extensive literature review of over 800 visualization publications. These scenarios distinguish different study goals and types of research questions and are illustrated through example studies. Through this broad survey and the distillation of these scenarios, we make two contributions. One, we encapsulate the current practices in the information visualization research community and, two, we provide a different approach to reaching decisions about what might be the most effective evaluation of a given information visualization. Scenarios can be used to choose appropriate research questions and goals and the provided examples can be consulted for guidance on how to design one's own study.

583 citations


Journal ArticleDOI
TL;DR: Each computational step that biologists encounter when dealing with digital images, the inherent challenges and the overall status of available software for bioimage informatics are reviewed, focusing on open-source options.
Abstract: Representative members of the bioimage informatics community review the computational steps and some of the primary software tools available to biologists who are acquiring and analyzing microscopy-based digital image data, with a focus on open-source options. Few technologies are more widespread in modern biological laboratories than imaging. Recent advances in optical technologies and instrumentation are providing hitherto unimagined capabilities. Almost all these advances have required the development of software to enable the acquisition, management, analysis and visualization of the imaging data. We review each computational step that biologists encounter when dealing with digital images, the inherent challenges and the overall status of available software for bioimage informatics, focusing on open-source options.

499 citations


Journal ArticleDOI
TL;DR: This paper studied ethnic discrimination in Germany's labour market with a correspondence test and found that a Turkish-sounding and a German-sounding name raised the average probability of a callback by about 14%.
Abstract: . This paper studies ethnic discrimination in Germany's labour market with a correspondence test. We send two similar applications to each of 528 advertisements for student internships, one with a Turkish-sounding and one with a German-sounding name. A German name raises the average probability of a callback by about 14%. Differential treatment is particularly strong and significant in smaller firms at which the applicant with the German name receives 24% more callbacks. Discrimination disappears when we restrict our sample to applications including reference letters which contain favourable information about the candidate's personality. We interpret this finding as evidence for statistical discrimination.

477 citations


Journal ArticleDOI
TL;DR: Applying mathematical models of information theory, it is demonstrated that neural desynchronization is positively related to the richness of information represented in the brain, thereby enabling encoding and retrieval of long-term memories.
Abstract: The traditional belief is that brain oscillations are important for human long-term memory, because they induce synchronized firing between cell assemblies which shapes synaptic plasticity. Therefore, most prior studies focused on the role of synchronization for episodic memory, as reflected in theta (∼5 Hz) and gamma (>40 Hz) power increases. These studies, however, neglect the role that is played by neural desynchronization, which is usually reflected in power decreases in the alpha and beta frequency band (8-30 Hz). In this paper we present a first idea, derived from information theory that gives a mechanistic explanation of how neural desynchronization aids human memory encoding and retrieval. Thereby we will review current studies investigating the role of alpha and beta power decreases during long-term memory tasks and show that alpha and beta power decreases play an important and active role for human memory. Applying mathematical models of information theory, we demonstrate that neural desynchronization is positively related to the richness of information represented in the brain, thereby enabling encoding and retrieval of long-term memories. This information via desynchronization hypothesis makes several predictions, which can be tested in future experiments.

420 citations


Journal ArticleDOI
Bruce A. Curtis1, Goro Tanifuji2, Goro Tanifuji1, Fabien Burki2, Ansgar Gruber1, Ansgar Gruber3, Manuel Irimia4, Shinichiro Maruyama2, Shinichiro Maruyama1, Maria Cecilia Arias5, Steven G. Ball5, Gillian H. Gile2, Gillian H. Gile1, Yoshihisa Hirakawa2, Julia F. Hopkins1, Julia F. Hopkins2, Alan Kuo6, Stefan A. Rensing1, Stefan A. Rensing7, Jeremy Schmutz6, Aikaterini Symeonidi7, Marek Eliáš8, Robert J.M. Eveleigh1, Emily K. Herman9, Mary J. Klute9, Takuro Nakayama2, Takuro Nakayama1, Miroslav Oborník10, Miroslav Oborník11, Adrian Reyes-Prieto2, Adrian Reyes-Prieto12, E. Virginia Armbrust13, Stephen J. Aves14, Robert G. Beiko1, Pedro M. Coutinho15, Joel B. Dacks9, Dion G. Durnford12, Naomi M. Fast2, Beverley R. Green2, Cameron J. Grisdale2, Franziska Hempel, Bernard Henrissat15, Marc P. Höppner16, Ken-ichiro Ishida17, Eunsoo Kim18, Luděk Kořený10, Luděk Kořený11, Peter G. Kroth3, Yuan Liu14, Yuan Liu19, Shehre-Banoo Malik1, Shehre-Banoo Malik2, Uwe G. Maier, Darcy L. McRose20, Thomas Mock21, Jonathan A. D. Neilson12, Naoko T. Onodera1, Naoko T. Onodera2, Anthony M. Poole22, Ellen J. Pritham, Thomas A. Richards19, Gabrielle Rocap13, Scott William Roy23, Chihiro Sarai17, Sarah Schaack24, Shu Shirato17, Claudio H. Slamovits1, Claudio H. Slamovits2, David F. Spencer1, David F. Spencer2, Shigekatsu Suzuki17, Alexandra Z. Worden20, Stefan Zauner, Kerrie Barry6, Callum J. Bell25, Arvind K. Bharti25, John A. Crow25, Jane Grimwood6, Robin Kramer25, Erika Lindquist6, Susan Lucas6, Asaf Salamov6, Geoffrey I. McFadden26, Christopher E. Lane, Patrick J. Keeling2, Michael W. Gray1, Michael W. Gray2, Igor V. Grigoriev6, John M. Archibald2, John M. Archibald1 
06 Dec 2012-Nature
TL;DR: The nuclear genomes of the cryptophyte Guillardia theta and the chlorarachniophyte Bigelowiella natans are sequenced and extensive genetic and biochemical mosaicism is revealed, with both host- and endosymbiont-derived genes servicing the mitochondrion, the host cell cytosol, the plastid and the remnant endosYmbionT cytOSol of both algae.
Abstract: Cryptophyte and chlorarachniophyte algae are transitional forms in the widespread secondary endosymbiotic acquisition of photosynthesis by engulfment of eukaryotic algae. Unlike most secondary plastid-bearing algae, miniaturized versions of the endosymbiont nuclei (nucleomorphs) persist in cryptophytes and chlorarachniophytes. To determine why, and to address other fundamental questions about eukaryote-eukaryote endosymbiosis, we sequenced the nuclear genomes of the cryptophyte Guillardia theta and the chlorarachniophyte Bigelowiella natans. Both genomes have >21,000 protein genes and are intron rich, and B. natans exhibits unprecedented alternative splicing for a single-celled organism. Phylogenomic analyses and subcellular targeting predictions reveal extensive genetic and biochemical mosaicism, with both host- and endosymbiont-derived genes servicing the mitochondrion, the host cell cytosol, the plastid and the remnant endosymbiont cytosol of both algae. Mitochondrion-to-nucleus gene transfer still occurs in both organisms but plastid-to-nucleus and nucleomorph-to-nucleus transfers do not, which explains why a small residue of essential genes remains locked in each nucleomorph.

356 citations


Journal ArticleDOI
TL;DR: It is shown that consideration of the amorphous forms of calcium carbonate within the physical notion of polyamorphism leads to new insights when it comes to the mechanisms by which polymorphic structures can evolve in the first place.
Abstract: Although the polymorphism of calcium carbonate is well known, and its polymorphs--calcite, aragonite, and vaterite--have been highly studied in the context of biomineralization, polyamorphism is a much more recently discovered phenomenon, and the existence of more than one amorphous phase of calcium carbonate in biominerals has only very recently been understood. Here we summarize what is known about polyamorphism in calcium carbonate as well as what is understood about the role of amorphous calcium carbonate in biominerals. We show that consideration of the amorphous forms of calcium carbonate within the physical notion of polyamorphism leads to new insights when it comes to the mechanisms by which polymorphic structures can evolve in the first place. This not only has implications for our understanding of biomineralization, but also of the means by which crystallization may be controlled in medical, pharmaceutical, and industrial contexts.

336 citations



Journal ArticleDOI
TL;DR: It is shown that stress triggers social approach behavior, which operates as a potent stress-buffering strategy in humans, thereby providing evidence for the tend-and-befriend hypothesis.
Abstract: Psychosocial stress precipitates a wide spectrum of diseases with major public-health significance. The fight-or-flight response is generally regarded as the prototypic human stress response, both physiologically and behaviorally. Given that having positive social interactions before being exposed to acute stress plays a preeminent role in helping individuals control their stress response, engaging in prosocial behavior in response to stress (tend-and-befriend) might also be a protective pattern. Little is known, however, about the immediate social responses following stress in humans. Here we show that participants who experienced acute social stress, induced by a standardized laboratory stressor, engaged in substantially more prosocial behavior (trust, trustworthiness, and sharing) compared with participants in a control condition, who did not experience socioevaluative threat. These effects were highly specific: Stress did not affect the readiness to exhibit antisocial behavior or to bear nonsocial risks. These results show that stress triggers social approach behavior, which operates as a potent stress-buffering strategy in humans, thereby providing evidence for the tend-and-befriend hypothesis.

Journal ArticleDOI
01 Aug 2012-Appetite
TL;DR: Factor structure was generally invariant across random selected groups, gender, and BMI, which indicates a high stability for the Eating Motivation Survey, and implications of the fifteen distinct motivations to choose foods in everyday life are discussed.

Journal ArticleDOI
TL;DR: Douglas Argos-filter can improve data accuracy by 50–90% and is an effective and flexible tool for preparing Argos data for direct biological interpretation or subsequent modelling.
Abstract: Summary The Argos System is used worldwide to satellite-track free-ranging animals, but location errors can range from tens of metres to hundreds of kilometres. Low-quality locations (Argos classes A, 0, B and Z) dominate animal tracking data. Standard-quality animal tracking locations (Argos classes 3, 2 and 1) have larger errors than those reported in Argos manuals. The Douglas Argos-filter (DAF) algorithm flags implausible locations based on user-defined thresholds that allow the algorithm's performance to be tuned to species' movement behaviours and study objectives. The algorithm is available in Movebank – a free online infrastructure for storing, managing, sharing and analysing animal movement data. We compared 21,044 temporally paired global positioning system (GPS) locations with Argos location estimates collected from Argos transmitters on free-ranging waterfowl and condors (13 species, 314 individuals, 54,895 animal-tracking days). The 95th error percentiles for unfiltered Argos locations 0, A, B and Z were within 35·8, 59·6, 163·2 and 220·2 km of the true location, respectively. After applying DAF with liberal thresholds, roughly 20% of the class 0 and A locations and 45% of the class B and Z locations were excluded, and the 95th error percentiles were reduced to 17·2, 15·0, 20·9 and 18·6 km for classes 0, A, B and Z, respectively. As thresholds were applied more conservatively, fewer locations were retained, but they possessed higher overall accuracy. Douglas Argos-filter can improve data accuracy by 50–90% and is an effective and flexible tool for preparing Argos data for direct biological interpretation or subsequent modelling.

Journal ArticleDOI
TL;DR: In this article, the authors studied the role of responsibility attribution for outcomes of delegated decisions and proposed a formal measure of responsibility and showed that this measure outperforms measures based on outcome or intention in predicting punishment behavior.
Abstract: To fully understand the motives for delegating a decision right, it is important to study responsibility attributions for outcomes of delegated decisions. We conducted an experiment in which subjects were able to delegate the choice between a fair or unfair allocation, and used a punishment option to elicit responsibility attributions. Our results show that, first, responsibility attribution can be effectively shifted and, second, this constitutes a powerful motive for the delegation of a decision right. Furthermore, we propose a formal measure of responsibility and show that this measure outperforms measures based on outcome or intention in predicting punishment behavior.

Journal ArticleDOI
TL;DR: The results suggest that recovery translates into employee workagement, and work engagement, in turn, prevents a loss in recovery level throughout the day, particularly when situational constraints are low.
Abstract: In this paper, we examined the within-person relations between morning recovery level (i.e., feeling refreshed and replenished) and work engagement throughout the day, and between work engagement throughout the day and the subsequent recovery level at the end of the workday. We hypothesized that job stressors (situational constraints, job demands) moderate these relations. A diary study over 1 workweek with 2 measurement occasions per day (N = 111 persons) provided support for most of the hypotheses: Morning recovery level predicted work engagement, and work engagement predicted subsequent recovery level at the end of the workday after controlling for morning recovery level. As predicted, situational constraints attenuated these relations, but job demands did not. The results suggest that recovery translates into employee work engagement, and work engagement, in turn, prevents a loss in recovery level throughout the day, particularly when situational constraints are low. Situational constraints seem to interrupt the reciprocal processes between recovery level and work engagement.

Journal ArticleDOI
TL;DR: In this article, the effect of preference similarity is absorbed by institutional, relational, and social opportunity structures in the German toxic chemicals policy domain and different types of information exchange operate in complementary, but not necessarily congruent, ways.
Abstract: Information exchange in policy networks is usually attributed to preference similarity, influence reputation, social trust, and institutional actor roles. We suggest that political opportunity structures and transaction costs play another crucial role and estimate a rich statistical network model on tie formation in the German toxic chemicals policy domain. The results indicate that the effect of preference similarity is absorbed by institutional, relational, and social opportunity structures. Political actors choose contacts who minimize transaction costs while maximizing outreach and information. We also find that different types of information exchange operate in complementary, but not necessarily congruent, ways.

Journal ArticleDOI
TL;DR: In this paper, the authors present a roadmap for how to overcome the acknowledged scientific gaps for the full replacement of systemic toxicity testing using animals, which is a major concern for the current state of the art.
Abstract: Systemic toxicity testing forms the cornerstone for the safety evaluation of substances. Pressures to move from traditional animal models to novel technologies arise from various concerns, including: the need to evaluate large numbers of previously untested chemicals and new products (such as nanoparticles or cell therapies), the limited predictivity of traditional tests for human health effects, duration and costs of current approaches, and animal welfare considerations. The latter holds especially true in the context of the scheduled 2013 marketing ban on cosmetic ingredients tested for systemic toxicity. Based on a major analysis of the status of alternative methods (Adler et al., 2011) and its independent review (Hartung et al., 2011), the present report proposes a roadmap for how to overcome the acknowledged scientific gaps for the full replacement of systemic toxicity testing using animals. Five whitepapers were commissioned addressing toxicokinetics, skin sensitization, repeated-dose toxicity, carcinogenicity, and reproductive toxicity testing. An expert workshop of 35 participants from Europe and the US discussed and refined these whitepapers, which were subsequently compiled to form the present report. By prioritizing the many options to move the field forward, the expert group hopes to advance regulatory science.

Journal ArticleDOI
TL;DR: In this paper, the authors present results of detailed experimental and theoretical studies of all-optical magnetization reversal by single circularly-polarized laser pulses in ferrimagnetic rare earth transition metal alloys.
Abstract: We present results of detailed experimental and theoretical studies of all-optical magnetization reversal by single circularly-polarized laser pulses in ferrimagnetic rare earth---transition metal (RE--TM) alloys Gd${}_{x}$Fe${}_{90\ensuremath{-}x}$Co${}_{10}$ ($20%lxl28%$). Using single-shot time-resolved magneto-optical microscopy and multiscale simulations, we identified and described the unconventional path followed by the magnetization during the reversal process. This reversal does not involve precessional motion of magnetization but is governed by the longitudinal relaxation and thus has a linear character. We demonstrate that this all-optically driven linear reversal can be modeled as a result of a two-fold impact of the laser pulse on the medium. First, due to absorption of the light and ultrafast laser-induced heating, the medium is brought to a highly nonequilibrium state. Simultaneously, due to the ultrafast inverse Faraday effect the circularly polarized laser pulse acts as an effective magnetic field of the amplitude up to $\ensuremath{\sim}$20 T. We show that the polarization-dependent reversal triggered by the circularly polarized light is feasible only in a narrow range (below 10%) of laser fluences. The duration of the laser pulse required for the reversal can be varied from $\ensuremath{\sim}$40 fs up to at least $\ensuremath{\sim}$1700 fs. We also investigate experimentally the role of the ferrimagnetic properties of GdFeCo in the all-optical reversal. In particular, the optimal conditions for the all-optical reversal are achieved just below the ferrimagnetic compensation temperature, where the magnetic information can be all-optically written by a laser pulse of minimal fluence and read out within just 30 ps. We argue that this is the fastest write-read event demonstrated for magnetic recording so far.

Journal ArticleDOI
TL;DR: This article reviewed published and new long-term (10-100 years) fish data series from 24 European lakes (area: 0.04-5,648 km2; mean depth: 1-177 m; a north-south gradient from Sweden to Spain) with an annual temperature increase of about 0.15-0.3°C per decade profound changes have occurred in either fish assemblage composition, body size and/or age structure during recent decades and a shift towards higher dominance of eurythermal species.
Abstract: Fish play a key role in the trophic dynamics of lakes. With climate warming, complex changes in fish assemblage structure may be expected owing to direct effects of temperature and indirect effects operating through eutrophication, water level changes, stratification and salinisation. We reviewed published and new long-term (10–100 years) fish data series from 24 European lakes (area: 0.04–5,648 km2; mean depth: 1–177 m; a north–south gradient from Sweden to Spain). Along with an annual temperature increase of about 0.15–0.3°C per decade profound changes have occurred in either fish assemblage composition, body size and/or age structure during recent decades and a shift towards higher dominance of eurythermal species. These shifts have occurred despite a reduction in nutrient loading in many of the lakes that should have benefited the larger-sized individuals and the fish species typically inhabiting cold-water, low-nutrient lakes. The cold-stenothermic Arctic charr has been particularly affected and its abundance has decreased in the majority of the lakes where its presence was recorded. The harvest of cool-stenothermal brown trout has decreased substantially in two southern lakes. Vendace, whitefish and smelt show a different response depending on lake depth and latitude. Perch has apparently been stimulated in the north, with stronger year classes in warm years, but its abundance has declined in the southern Lake Maggiore, Italy. Where introduced, roach seems to take advantage of the higher temperature after years of low population densities. Eurythermal species such as common bream, pike–perch and/or shad are apparently on the increase in several of the lakes. The response of fish to the warming has been surprisingly strong and fast in recent decades, making them ideal sentinels for detecting and documenting climate-induced modifications of freshwater ecosystems.

Journal ArticleDOI
TL;DR: Results suggest that both magnitude and topography of late alpha suppression in response to single words can indicate a listener's sensitivity to acoustic features and the ability to comprehend speech under adverse listening conditions.
Abstract: Modulations of human alpha oscillations (8–13 Hz) accompany many cognitive processes, but their functional role in auditory perception has proven elusive: Do oscillatory dynamics of alpha reflect acoustic details of the speech signal and are they indicative of comprehension success? Acoustically presented words were degraded in acoustic envelope and spectrum in an orthogonal design, and electroencephalogram responses in the frequency domain were analyzed in 24 participants, who rated word comprehensibility after each trial. First, the alpha power suppression during and after a degraded word depended monotonically on spectral and, to a lesser extent, envelope detail. The magnitude of this alpha suppression exhibited an additional and independent influence on later comprehension ratings. Second, source localization of alpha suppression yielded superior parietal, prefrontal, as well as anterior temporal brain areas. Third, multivariate classification of the time–frequency pattern across participants showed that patterns of late posterior alpha power allowed best for above-chance classification of word intelligibility. Results suggest that both magnitude and topography of late alpha suppression in response to single words can indicate a listener's sensitivity to acoustic features and the ability to comprehend speech under adverse listening conditions.

Journal ArticleDOI
TL;DR: In this article, the authors investigate the interdependence of the default risk of several Eurozone countries and their domestic banks during the period between June 2007 and May 2010, using daily credit default swaps (CDS).
Abstract: We investigate the interdependence of the default risk of several Eurozone countries (France, Germany, Italy, Ireland, the Netherlands, Portugal, and Spain) and their domestic banks during the period between June 2007 and May 2010, using daily credit default swaps (CDS). Bank bailout programs changed the composition of both banks’ and sovereign balance sheets and, moreover, affected the linkage between the default risk of governments and their local banks. Our main findings suggest that in the period before bank bailouts the contagion disperses from bank credit spreads into the sovereign CDS market. After bailouts, a financial sector shock affects sovereign CDS spreads more strongly in the short run. However, the impact becomes insignificant in the long term. Furthermore, government CDS spreads become an important determinant of banks’ CDS series. The interdependence of government and bank credit risk is heterogeneous across countries, but homogeneous within the same country.

Journal ArticleDOI
TL;DR: Differentiated integration has been the subject of political discussion and academic thought for a long time and it has also become an important feature of European integration since the 1990s as discussed by the authors, however, it is astonishing how poor our research and knowledge about the phenomenon is.
Abstract: Differentiated integration has been the subject of political discussion and academic thought for a long time. It has also become an important feature of European integration since the 1990s. By contrast, it is astonishing how poor our research and knowledge about the phenomenon is. Whereas there is an abundance of conceptual work and some normative analysis, positive theories on the causes or effects of differentiated integration are rare. Empirical analysis has concentrated on a few important cases of treaty law (such as EMU and Schengen) while there is no systematic knowledge about differentiated integration in secondary law. The aim of this article is therefore twofold: to review the existing typological and theory-oriented research and to outline a research agenda striving for systematic empirical and explanatory knowledge.

Journal ArticleDOI
TL;DR: The first case of a genetic CD21 deficiency in human subjects is reported, and functional studies with anti-immunoglobulin- and C3d-containing immune complexes showed a complete loss of costimulatory activity of C3D in enhancing suboptimal B-cell receptor stimulation.
Abstract: Background Complement receptor 2 (CR2/CD21) is part of the B-cell coreceptor and expressed by mature B cells and follicular dendritic cells. CD21 is a receptor for C3d-opsonized immune complexes and enhances antigen-specific B-cell responses. Objective Genetic inactivation of the murine CR2 locus results in impaired humoral immune responses. Here we report the first case of a genetic CD21 deficiency in human subjects. Methods CD21 protein expression was analyzed by means of flow cytometry and Western blotting. CD21 transcripts were quantified by using real-time PCR. The CD21 gene was sequenced. Wild-type and mutant CD21 cDNA expression was studied after transfection of 293T cells. Binding of EBV-gp350 or C3d-containing immune complexes and induction of calcium flux in CD21-deficient B cells were analyzed by means of flow cytometry. Antibody responses to protein and polysaccharide vaccines were measured. Results A 28-year-old man presented with recurrent infections, reduced class-switched memory B cells, and hypogammaglobulinemia. CD21 receptor expression was undetectable. Binding of C3d-containing immune complexes and EBV-gp350 to B cells was severely reduced. Sequence analysis revealed a compound heterozygous deleterious mutation in the CD21 gene. Functional studies with anti-immunoglobulin– and C3d-containing immune complexes showed a complete loss of costimulatory activity of C3d in enhancing suboptimal B-cell receptor stimulation. Vaccination responses to protein antigens were normal, but the response to pneumococcal polysaccharide vaccination was moderately impaired. Conclusions Genetic CD21 deficiency adds to the molecular defects observed in human subjects with hypogammaglobulinemia.

Journal ArticleDOI
TL;DR: In this article, the authors exploit frequency-resolved optical gating to directly investigate plasmon response times of different antenna geometries resonant in the near-infrared.
Abstract: Plasmonic nanoantennas are efficient devices to concentrate light in spatial regions much smaller than the wavelength. Only recently, their ability to manipulate photons also on a femtosecond time scale has been harnessed. Nevertheless, designing the dynamical properties of optical antennas has been difficult since the relevant microscopic processes governing their ultrafast response have remained unclear. Here, we exploit frequency-resolved optical gating to directly investigate plasmon response times of different antenna geometries resonant in the near-infrared. Third-harmonic imaging is used in parallel to spatially monitor the plasmonic mode patterns. We find that the few-femtosecond dynamics of these nanodevices is dominated by radiative damping. A high efficiency for nonlinear frequency conversion is directly linked to long plasmon damping times. This single parameter explains the counterintuitive result that rod-type nanoantennas with minimum volume generate by far the strongest third-harmonic emission as compared to the more bulky geometries of bow-tie-, elliptical-, or disk-shaped specimens.

Journal ArticleDOI
TL;DR: In this paper, a diary study adds to research on the Job Demands-Resources model on the level of daily processes, namely, additive and interaction effects of day specific job demands and day-specific job and personal resources on day specific work engagement.
Abstract: This diary study adds to research on the Job Demands-Resources model. We test main propositions of this model on the level of daily processes, namely, additive and interaction effects of day-specific job demands and day-specific job and personal resources on day-specific work engagement. One hundred and fourteen employees completed electronic questionnaires three times a day over the course of one working week. Hierarchical linear models indicated that day-specific resources (psychological climate, job control, and being recovered in the morning) promoted work engagement. As predicted, day-specific job control qualified the relationship between day-specific time pressure and work engagement: on days with higher job control, time pressure was beneficial for work engagement. On days with lower job control, time pressure was detrimental for work engagement. We discuss our findings and contextualize them in the current literature on dynamic and emergent job characteristics.

Journal ArticleDOI
TL;DR: The authors compare the strategy method and the direct response method in public good experiments in a within-subject design and find that people identified by the strategy methods as conditional cooperators also behave as conditional co-loperators under the direct-response method.

Journal ArticleDOI
TL;DR: This review focuses on the cellular activities of ribosome-associated chaperones and highlights new findings indicating additional functions beyond de novo folding, including the assembly of oligomeric complexes, such as ribosomes, modulation of translation and targeting of proteins.

Journal ArticleDOI
TL;DR: The mixture of different fatty acids composing a technical-grade plant oil substrate gives rise to a range of products, which decisively determines possible process schemes, and potentially provides novel chemicals and intermediates not employed to date.
Abstract: Plant oils are attractive substrates for the chemical industry. Their scope for the production of chemicals can be expanded by sophisticated catalytic conversions. Olefin metathesis is an example, which also illustrates generic issues of "biorefining" to chemicals. Utilization on a large scale requires high catalyst activities, which influences the choice of the metathesis reaction. The mixture of different fatty acids composing a technical-grade plant oil substrate gives rise to a range of products. This decisively determines possible process schemes, and potentially provides novel chemicals and intermediates not employed to date.

Journal ArticleDOI
TL;DR: In this article, an action control perspective on emotion regulation is adopted, contextualizing the gap between emotion control goals (e.g., I want to remain calm) and emotional outcomes.
Abstract: The present review adopts an action control perspective on emotion regulation, contextualising the gap between emotion control goals (e.g., I want to remain calm) and emotional outcomes (e.g., anger, anxiety, and aggression) in terms of the broader literature on goal pursuit. We propose that failure to effectively regulate emotions can result from difficulties with the self-regulatory tasks of (i) identifying the need to regulate, (ii) deciding whether and how to regulate, and (iii) enacting a regulation strategy. Next we review evidence that a technique traditionally associated with regulating behavioural goals (forming implementation intentions or “if-then” planning) can help to overcome these difficulties. Meta-analysis indicated that forming implementation intentions is effective in modifying emotional outcomes, with a large effect relative to no regulation instructions (k = 21, N = 1306 d + = 0.91, 95% CI = 0.61 to 1.20) and a medium-sized effect relative to goal intention instructions (k = 29, N = 1208, d + = 0.53, 95% CI = 0.42 to 0.65). Our conclusion is that research on emotion regulation might benefit from an action control perspective and the interventions that this perspective offers.

Journal ArticleDOI
TL;DR: In this article, the formation of saturated and supersaturated calcium carbonate-bicarbonate solutions using Ca2+ ion selective electrodes, pH electrodes, isothermal titration calorimetry, nanoparticle tracking analysis, 13C T2 relaxation measurements, and 13C PFG-STE diffusion NMR measurements.
Abstract: Invertebrate organisms that use calcium carbonate extensively in the formation of their hard tissues have the ability to deposit biominerals with control over crystal size, shape, orientation, phase, texture, and location. It has been proposed by our group that charged polyelectrolytes, like acidic proteins, may be employed by organisms to direct crystal growth through an intermediate liquid phase in a process called the polymer-induced liquid-precursor (PILP) process. Recently, it has been proposed that calcium carbonate crystallization, even in the absence of any additives, follows a non-classical, multi-step crystallization process by first associating into a liquid precursor phase before transition into solid amorphous calcium carbonate (ACC) and eventually crystalline calcium carbonates. In order to determine if the PILP process involves the promotion, or stabilization, of a naturally occurring liquid precursor to ACC, we have analyzed the formation of saturated and supersaturated calcium carbonate–bicarbonate solutions using Ca2+ ion selective electrodes, pH electrodes, isothermal titration calorimetry, nanoparticle tracking analysis, 13C T2 relaxation measurements, and 13C PFG-STE diffusion NMR measurements. These studies provide evidence that, in the absences of additives, and at near neutral pH (emulating the conditions of biomineralization and biomimetic model systems), a condensed phase of liquid-like droplets of calcium carbonate forms at a critical concentration, where it is stabilized intrinsically by bicarbonate ions. In experiments with polymer additive, the data suggests that the polymer is kinetically stabilizing this liquid condensed phase in a distinct and pronounced fashion during the so called PILP process. Verification of this precursor phase and the stabilization that polymer additives provide during the PILP process sheds new light on the mechanism through which biological organisms can exercise such control over deposited CaCO3 biominerals, and on the potential means to generate in vitro mineral products with features that resemble biominerals seen in nature.