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Showing papers by "University of Los Andes published in 2013"


Journal ArticleDOI
TL;DR: These evidence‐based guidelines offer practical recommendations on the diagnosis and general management of hemophilia, as well as the management of complications including musculoskeletal issues, inhibitors, and transfusion‐transmitted infections.
Abstract: Hemophilia is a rare disorder that is complex to diagnose and to manage. These evidence-based guidelines offer practical recommendations on the diagnosis and general management of hemophilia, as well as the management of complications including musculoskeletal issues, inhibitors, and transfusion-transmitted infections. By compiling these guidelines, the World Federation of Hemophilia aims to assist healthcare providers seeking to initiate and/or maintain hemophilia care programs, encourage practice harmonization around the world and, where recommendations lack adequate evidence, stimulate appropriate studies.

1,733 citations


Journal ArticleDOI
TL;DR: This survey classifies routing problems from the perspective of information quality and evolution and presents a comprehensive review of applications and solution methods for dynamic vehicle routing problems.

1,066 citations


Journal ArticleDOI
Hans ter Steege1, Hans ter Steege2, Nigel C. A. Pitman3, Daniel Sabatier4, Christopher Baraloto5, Rafael de Paiva Salomão6, Juan Ernesto Guevara7, Oliver L. Phillips8, Carolina V. Castilho9, William E. Magnusson10, Jean-François Molino4, Abel Monteagudo, Percy Núñez Vargas11, Juan Carlos Montero10, Ted R. Feldpausch12, Ted R. Feldpausch8, Eurídice N. Honorio Coronado8, Timothy J. Killeen13, Bonifacio Mostacedo14, Rodolfo Vasquez, Rafael L. Assis15, Rafael L. Assis10, John Terborgh3, Florian Wittmann16, Ana Andrade10, William F. Laurance17, Susan G. Laurance17, Beatriz Schwantes Marimon18, Ben Hur Marimon18, Ima Célia Guimarães Vieira6, Iêda Leão do Amaral10, Roel J. W. Brienen8, Hernán Castellanos, Dairon Cárdenas López, Joost F. Duivenvoorden19, Hugo Mogollón20, Francisca Dionízia de Almeida Matos10, Nállarett Dávila21, Roosevelt García-Villacorta22, Pablo Roberto Stevenson Diaz23, Flávia R. C. Costa10, Thaise Emilio10, Carolina Levis10, Juliana Schietti10, Priscila Souza10, Alfonso Alonso24, Francisco Dallmeier24, Álvaro Javier Duque Montoya25, Maria Teresa Fernandez Piedade10, Alejandro Araujo-Murakami, Luzmila Arroyo, Rogério Gribel, Paul V. A. Fine7, Carlos A. Peres26, Marisol Toledo14, A C Gerardo Aymard, Timothy R. Baker8, Carlos Cerón27, Julien Engel28, Terry W. Henkel29, Paul J. M. Maas1, Pascal Petronelli, Juliana Stropp, Charles E. Zartman10, Doug Daly30, David A. Neill, Marcos Silveira31, Marcos Ríos Paredes, Jérôme Chave32, Diogenes de Andrade Lima Filho10, Peter M. Jørgensen33, Alfredo F. Fuentes33, Jochen Schöngart16, Fernando Cornejo Valverde34, Anthony Di Fiore35, E. M. Jimenez25, Maria Cristina Peñuela Mora25, Juan Fernando Phillips, Gonzalo Rivas36, Tinde van Andel1, Patricio von Hildebrand, Bruce Hoffman1, Egleé L. Zent37, Yadvinder Malhi38, Adriana Prieto25, Agustín Rudas25, Ademir R. Ruschell9, Natalino Silva39, Vincent A. Vos, Stanford Zent37, Alexandre Adalardo de Oliveira40, Angela Cano Schutz23, Therany Gonzales34, Marcelo Trindade Nascimento41, Hirma Ramírez-Angulo23, Rodrigo Sierra, Milton Tirado, Maria Natalia Umaña Medina23, Geertje M. F. van der Heijden42, Geertje M. F. van der Heijden43, César I.A. Vela11, Emilio Vilanova Torre23, Corine Vriesendorp, Ophelia Wang44, Kenneth R. Young35, Cláudia Baider40, Henrik Balslev45, Cid Ferreira10, Italo Mesones7, Armando Torres-Lezama23, Ligia Estela Urrego Giraldo25, Roderick Zagt46, Miguel Alexiades47, Lionel Hernández, Isau Huamantupa-Chuquimaco, William Milliken48, Walter Palacios Cuenca, Daniela Pauletto, Elvis H. Valderrama Sandoval49, Elvis H. Valderrama Sandoval50, Luis Valenzuela Gamarra, Kyle G. Dexter22, Kenneth J. Feeley51, Kenneth J. Feeley52, Gabriela Lopez-Gonzalez8, Miles R. Silman53 
Naturalis1, Utrecht University2, Duke University3, Institut de recherche pour le développement4, Institut national de la recherche agronomique5, Museu Paraense Emílio Goeldi6, University of California, Berkeley7, University of Leeds8, Empresa Brasileira de Pesquisa Agropecuária9, National Institute of Amazonian Research10, National University of Saint Anthony the Abbot in Cuzco11, University of Exeter12, World Wide Fund for Nature13, Universidad Autónoma Gabriel René Moreno14, Norwegian University of Life Sciences15, Max Planck Society16, James Cook University17, Universidade do Estado de Mato Grosso18, University of Amsterdam19, Silver Spring Networks20, State University of Campinas21, University of Edinburgh22, University of Los Andes23, Smithsonian Conservation Biology Institute24, National University of Colombia25, University of East Anglia26, Central University of Ecuador27, Centre national de la recherche scientifique28, Humboldt State University29, New York Botanical Garden30, Universidade Federal do Acre31, Paul Sabatier University32, Missouri Botanical Garden33, Amazon.com34, University of Texas at Austin35, University of Florida36, Venezuelan Institute for Scientific Research37, Environmental Change Institute38, Federal Rural University of Amazonia39, University of São Paulo40, State University of Norte Fluminense41, Smithsonian Tropical Research Institute42, University of Wisconsin–Milwaukee43, Northern Arizona University44, Aarhus University45, Tropenbos International46, University of Kent47, Royal Botanic Gardens48, Universidad Nacional de la Amazonía Peruana49, University of Missouri–St. Louis50, Fairchild Tropical Botanic Garden51, Florida International University52, Wake Forest University53
18 Oct 2013-Science
TL;DR: The finding that Amazonia is dominated by just 227 tree species implies that most biogeochemical cycling in the world’s largest tropical forest is performed by a tiny sliver of its diversity.
Abstract: The vast extent of the Amazon Basin has historically restricted the study of its tree communities to the local and regional scales. Here, we provide empirical data on the commonness, rarity, and richness of lowland tree species across the entire Amazon Basin and Guiana Shield (Amazonia), collected in 1170 tree plots in all major forest types. Extrapolations suggest that Amazonia harbors roughly 16,000 tree species, of which just 227 (1.4%) account for half of all trees. Most of these are habitat specialists and only dominant in one or two regions of the basin. We discuss some implications of the finding that a small group of species—less diverse than the North American tree flora—accounts for half of the world’s most diverse tree community.

963 citations


Journal ArticleDOI
TL;DR: Differentiation of the burden and risk of babies born preterm and SGA rather than with low birthweight could guide prevention and management strategies to speed progress towards Millennium Development Goal 4--the reduction of child mortality.

660 citations


Journal ArticleDOI
TL;DR: In this article, a detailed description of the analysis used by the CMS Collaboration in the search for the standard model Higgs boson in pp collisions at the LHC, which led to the observation of a new boson.
Abstract: A detailed description is reported of the analysis used by the CMS Collaboration in the search for the standard model Higgs boson in pp collisions at the LHC, which led to the observation of a new boson. The data sample corresponds to integrated luminosities up to 5.1 inverse femtobarns at sqrt(s) = 7 TeV, and up to 5.3 inverse femtobarns at sqrt(s) = 8 TeV. The results for five Higgs boson decay modes gamma gamma, ZZ, WW, tau tau, and bb, which show a combined local significance of 5 standard deviations near 125 GeV, are reviewed. A fit to the invariant mass of the two high resolution channels, gamma gamma and ZZ to 4 ell, gives a mass estimate of 125.3 +/- 0.4 (stat) +/- 0.5 (syst) GeV. The measurements are interpreted in the context of the standard model Lagrangian for the scalar Higgs field interacting with fermions and vector bosons. The measured values of the corresponding couplings are compared to the standard model predictions. The hypothesis of custodial symmetry is tested through the measurement of the ratio of the couplings to the W and Z bosons. All the results are consistent, within their uncertainties, with the expectations for a standard model Higgs boson.

643 citations


Journal ArticleDOI
TL;DR: The burden of small-for-gestational-age births is very high in countries of low and middle income and is concentrated in south Asia.

609 citations


Journal ArticleDOI
TL;DR: In this paper, two-particle angular correlations for charged particles emitted in pPb collisions at a nucleon-nucleon center-of-mass energy of 5.02 TeV are presented.

575 citations


Journal ArticleDOI
Betsy A. Read1, Jessica Kegel2, Mary J. Klute3, Alan Kuo4, Stephane C. Lefebvre5, Florian Maumus6, Christoph Mayer7, John P. Miller8, Adam Monier9, Asaf Salamov4, Jeremy R. Young10, María Aguilar3, Jean-Michel Claverie11, Stephan Frickenhaus2, Karina Gonzalez12, Emily K. Herman3, Yao-Cheng Lin13, Johnathan A. Napier14, Hiroyuki Ogata11, Analissa F. Sarno1, Jeremy Shmutz4, Declan C. Schroeder, Colomban de Vargas15, Frédéric Verret16, Peter von Dassow17, Klaus Valentin2, Yves Van de Peer13, Glen L. Wheeler18, Joel B. Dacks3, Charles F. Delwiche8, Sonya T. Dyhrman19, Sonya T. Dyhrman2, Sonya T. Dyhrman20, Gernot Glöckner21, Uwe John2, Thomas A. Richards22, Alexandra Z. Worden9, Xiaoyu Zhang1, Igor V. Grigoriev23, Andrew E. Allen24, Kay D. Bidle25, Kay D. Bidle11, Mark Borodovsky11, Chris Bowler15, Colin Brownlee26, Colin Brownlee1, J. Mark Cock12, Marek Eliáš27, Vadim N. Gladyshev28, Marco Groth1, Chittibabu Guda, Ahmad R. Hadaegh29, M. D. Iglesias-Rodriguez30, Jerry Jenkins16, Bethan M. Jones31, Tracy Lawson32, Florian Leese33, Erika Lindquist34, Alexei Lobanov27, Alexandre Lomsadze25, Shehre-Banoo Malik35, Mary E. Marsh36, Luke C. M. Mackinder15, Thomas Mock11, Bernd Mueller-Roeber37, António Pagarete38, Micaela S. Parker39, Ian Probert11, Hadi Quesneville15, Christine A. Raines31, Stefan A. Rensing15, Stefan A. Rensing2, Diego Mauricio Riaño-Pachón40, Sophie Richier41, Sophie Richier40, Sebastian D. Rokitta42, Yoshihiro Shiraiwa43, Darren M. Soanes42, Mark van der Giezen39, Thomas M. Wahlund41, Bryony A. P. Williams44, Willie Wilson43, Gordon Wolfe41, Louie L. Wurch40, Louie L. Wurch42 
11 Jul 2013-Nature
TL;DR: Comparisons across strains demonstrate that E. huxleyi, which has long been considered a single species, harbours extensive genome variability reflected in different metabolic repertoires, and reveals a pan genome (core genes plus genes distributed variably between strains) probably supported by an atypical complement of repetitive sequence in the genome.
Abstract: Coccolithophores have influenced the global climate for over 200 million years(1). These marine phytoplankton can account for 20 per cent of total carbon fixation in some systems(2). They form blooms that can occupy hundreds of thousands of square kilometres and are distinguished by their elegantly sculpted calcium carbonate exoskeletons (coccoliths), rendering them visible from space(3). Although coccolithophores export carbon in the form of organic matter and calcite to the sea floor, they also release CO2 in the calcification process. Hence, they have a complex influence on the carbon cycle, driving either CO2 production or uptake, sequestration and export to the deep ocean(4). Here we report the first haptophyte reference genome, from the coccolithophore Emiliania huxleyi strain CCMP1516, and sequences from 13 additional isolates. Our analyses reveal a pan genome (core genes plus genes distributed variably between strains) probably supported by an atypical complement of repetitive sequence in the genome. Comparisons across strains demonstrate that E. huxleyi, which has long been considered a single species, harbours extensive genome variability reflected in different metabolic repertoires. Genome variability within this species complex seems to underpin its capacity both to thrive in habitats ranging from the equator to the subarctic and to form large-scale episodic blooms under a wide variety of environmental conditions.

430 citations


Journal ArticleDOI
TL;DR: In this paper, measurements of two-and four-particle angular correlations for charged particles emitted in pPb collisions are presented over a wide range in pseudorapidity and full azimuth.

423 citations


Journal ArticleDOI
TL;DR: In this paper, the importance of large trees for tropical forest biomass storage and explore which intrinsic (species trait) and extrinsic (environment) variables are associated with the density of trees and forest biomass at continental and pan-tropical scales.
Abstract: Aim Large trees (d.b.h. 70 cm) store large amounts of biomass. Several studies suggest that large trees may be vulnerable to changing climate, poten- tially leading to declining forest biomass storage. Here we determine the importance of large trees for tropical forest biomass storage and explore which intrinsic (species trait) and extrinsic (environment) variables are associated with the density of large trees and forest biomass at continental and pan-tropical scales. Location Pan-tropical.

375 citations


Journal ArticleDOI
TL;DR: This study demonstrated that MSCs contribute to the generation of an immunosuppressive environment via the inhibition of proinflammatory T cells and the induction of T cells with a regulatory phenotype, which might have important clinical implications for inflammatory and autoimmune diseases.
Abstract: Mesenchymal stem cells (MSCs) are adult, multipotent, stem cells with immunomodulatory properties. The mechanisms involved in the capacity of MSCs to inhibit the proliferation of proinflammatory T lymphocytes, which appear responsible for causing autoimmune disease, have yet to be fully elucidated. One of the underlying mechanisms studied recently is the ability of MSCs to generate T regulatory (Treg) cells in vitro and in vivo from activated peripheral blood mononuclear cells (PBMC), T-CD4+ and also T-CD8+ cells. In the present work we investigated the capacity of MSCs to generate Treg cells using T-CD4+ cells induced to differentiate toward the proinflammatory Th1 and Th17 lineages. MSCs were obtained from mouse bone marrow and characterized according to their surface antigen expression and their multilineage differentiation potential. CD4+ T cells isolated from mouse spleens were induced to differentiate into Th1 or Th17 cells and co-cultured with MSCs added at day 0, 2 or 4 of the differentiation processes. After six days, CD25, Foxp3, IL-17 and IFN-γ expression was assessed by flow cytometry and helios and neuropilin 1 mRNA levels were assessed by RT-qPCR. For the functional assays, the ‘conditioned’ subpopulation generated in the presence of MSCs was cultured with concanavalin A-activated CD4+ T cells labeled with carboxyfluorescein succinimidyl ester. Finally, we used the encephalomyelitis autoimmune diseases (EAE) mouse model, in which mice were injected with MSCs at day 18 and 30 after immunization. At day 50, the mice were euthanized and draining lymph nodes were extracted for Th1, Th17 and Treg detection by flow cytometry. MSCs were able to suppress the proliferation, activation and differentiation of CD4+ T cells induced to differentiate into Th1 and Th17 cells. This substantial suppressive effect was associated with an increase of the percentage of functional induced CD4+CD25+Foxp3+ regulatory T cells and IL-10 secretion. However, using mature Th1 or Th17 cells our results demonstrated that while MSCs suppress the proliferation and phenotype of mature Th1 and Th17 cells they did not generate Treg cells. Finally, we showed that the beneficial effect observed following MSC injection in an EAE mouse model was associated with the suppression of Th17 cells and an increase in the percentage of CD4+CD25+Foxp3+ T lymphocytes when administrated at early stages of the disease. This study demonstrated that MSCs contribute to the generation of an immunosuppressive environment via the inhibition of proinflammatory T cells and the induction of T cells with a regulatory phenotype. Together, these results might have important clinical implications for inflammatory and autoimmune diseases.

Journal ArticleDOI
TL;DR: The present data are consistent with the pure scalar hypothesis, while disfavoring the pure pseudoscalar hypothesis.
Abstract: A study is presented of the mass and spin-parity of the new boson recently observed at the LHC at a mass near 125 GeV. An integrated luminosity of 17.3 fb^(-1), collected by the CMS experiment in proton-proton collisions at center-of-mass energies of 7 and 8 TeV, is used. The measured mass in the ZZ channel, where both Z bosons decay to e or μ pairs, is 126.2±0.6(stat)±0.2(syst) GeV. The angular distributions of the lepton pairs in this channel are sensitive to the spin-parity of the boson. Under the assumption of spin 0, the present data are consistent with the pure scalar hypothesis, while disfavoring the pure pseudoscalar hypothesis.

Journal ArticleDOI
TL;DR: An unbinned maximum-likelihood fit to the dimuon invariant mass distribution gives a branching fraction B(Bs(0)→μ+ μ-)=(3.0(-0.9)(+1.0))×10(-9), where the uncertainty includes both statistical and systematic contributions.
Abstract: Results are presented from a search for the rare decays B0s→μ+μ− and B0→μ+μ− in pp collisions at s√=7 and 8 TeV, with data samples corresponding to integrated luminosities of 5 and 20 fb−1, respectively, collected by the CMS experiment at the LHC. An unbinned maximum-likelihood fit to the dimuon invariant mass distribution gives a branching fraction B(B0s→μ+μ−)=(3.0+1.0−0.9)×10−9, where the uncertainty includes both statistical and systematic contributions. An excess of B0s→μ+μ− events with respect to background is observed with a significance of 4.3 standard deviations. For the decay B0→μ+μ− an upper limit of B(B0→μ+μ−)<1.1×10−9 at the 95% confidence level is determined. Both results are in agreement with the expectations from the standard model.

Journal ArticleDOI
S. Chatrchyan1, Vardan Khachatryan1, Albert M. Sirunyan1, Armen Tumasyan1  +3948 moreInstitutions (144)
21 Dec 2013
TL;DR: In this article, a search for the pair production of top squarks in events with a single isolated electron or muon, jets, large missing transverse momentum, and large transverse mass is presented.
Abstract: This paper presents a search for the pair production of top squarks in events with a single isolated electron or muon, jets, large missing transverse momentum, and large transverse mass. The data sample corresponds to an integrated luminosity of 19.5 inverse femtobarns of pp collisions collected in 2012 by the CMS experiment at the LHC at a center-of-mass energy of sqrt(s) = 8 TeV. No significant excess in data is observed above the expectation from standard model processes. The results are interpreted in the context of supersymmetric models with pair production of top squarks that decay either to a top quark and a neutralino or to a bottom quark and a chargino. For small mass values of the lightest supersymmetric particle, top-squark mass values up to around 650 GeV are excluded.

Journal ArticleDOI
TL;DR: It is demonstrated that average net diversification rates of Páramo plant lineages are faster than those of other reportedly fast evolving hotspots and that the faster evolving lineage are more likely to be found in P €ramos than the other hotspots.
Abstract: Understanding the processes that cause speciation is a key aim of evolutionary biology. Lineages or biomes that exhibit recent and rapid diversification are ideal model systems for determining these processes. Species rich biomes reported to be of relatively recent origin, i.e., since the beginning of the Miocene, include Mediterranean ecosystems such as the California Floristic Province, oceanic islands such as the Hawaiian archipelago and the Neotropical high elevation ecosystem of the Paramos. Paramos constitute grasslands above the forest tree-line (at elevations of c. 2800–4700 m) with high species endemism. Organisms that occupy this ecosystem are a likely product of unique adaptations to an extreme environment that evolved during the last three to five million years when the Andes reached an altitude that was capable of sustaining this type of vegetation. We compared net diversification rates of lineages in fast evolving biomes using 73 dated molecular phylogenies. Based on our sample, we demonstrate that average net diversification rates of Paramo plant lineages are faster than those of other reportedly fast evolving hotspots and that the faster evolving lineages are more likely to be found in Paramos than the other hotspots. Paramos therefore represent the ideal model system for studying diversification processes. Most of the speciation events that we observed in the Paramos (144 out of 177) occurred during the Pleistocene possibly due to the effects of species range contraction and expansion that may have resulted from the well-documented climatic changes during that period. Understanding these effects will assist with efforts to determine how future climatic changes will impact plant populations.

Journal ArticleDOI
TL;DR: The results of this study will provide a robust examination of the correlates of adiposity and obesity in children, focusing on both sides of the energy balance equation.
Abstract: Background: The primary aim of the International Study of Childhood Obesity, Lifestyle and the Environment (ISCOLE) was to determine the relationships between lifestyle behaviours and obesity in a multi-national study of children, and to investigate the influence of higher-order characteristics such as behavioural settings, and the physical, social and policy environments, on the observed relationships within and between countries. Methods/design: The targeted sample included 6000 10-year old children from 12 countries in five major geographic regions of the world (Europe, Africa, the Americas, South-East Asia, and the Western Pacific). The protocol included procedures to collect data at the individual level (lifestyle, diet and physical activity questionnaires, accelerometry), family and neighborhood level (parental questionnaires), and the school environment (school administrator questionnaire and school audit tool). A standard study protocol was developed for implementation in all regions of the world. A rigorous system of training and certification of study personnel was developed and implemented, including web-based training modules and regional in-person training meetings. Discussion: The results of this study will provide a robust examination of the correlates of adiposity and obesity in children, focusing on both sides of the energy balance equation. The results will also provide important new information that will inform the development of lifestyle, environmental, and policy interventions to address and prevent childhood obesity that may be culturally adapted for implementation around the world. ISCOLE represents a multi-national collaboration among all world regions, and represents a global effort to increase research understanding, capacity and infrastructure in childhood obesity.

Journal ArticleDOI
TL;DR: In this article, results of searches for heavy stable charged particles produced in pp collisions at 7 and 8 TeV are presented corresponding to an integrated luminosity of 5.0 and 18.8 inverse femtobarns, respectively.
Abstract: Results of searches for heavy stable charged particles produced in pp collisions at sqrt(s) = 7 and 8 TeV are presented corresponding to an integrated luminosity of 5.0 inverse femtobarns and 18.8 inverse femtobarns, respectively. Data collected with the CMS detector are used to study the momentum, energy deposition, and time-of-flight of signal candidates. Leptons with an electric charge between e/3 and 8e, as well as bound states that can undergo charge exchange with the detector material, are studied. Analysis results are presented for various combinations of signatures in the inner tracker only, inner tracker and muon detector, and muon detector only. Detector signatures utilized are long time-of-flight to the outer muon system and anomalously high (or low) energy deposition in the inner tracker. The data are consistent with the expected background, and upper limits are set on the production cross section of long-lived gluinos, scalar top quarks, and scalar tau leptons, as well as pair produced long-lived leptons. Corresponding lower mass limits, ranging up to 1322 GeV for gluinos, are the most stringent to date.

Journal ArticleDOI
TL;DR: The pre-print version of the final publishing paper that is available from the link below as mentioned in this paper is also available from Amazon Mechanical Turk, however, the preprint version requires a subscription.
Abstract: The article is the pre-print version of the final publishing paper that is available from the link below.

Journal ArticleDOI
TL;DR: Evidence for selection acting on the Bd genome is reported, supporting the hypothesis that protease genes are important in evolutionary transitions in this group, and it is found that even the most recently evolved Bd clade contained more genetic variation than previously reported.
Abstract: Understanding the evolutionary history of microbial pathogens is critical for mitigating the impacts of emerging infectious diseases on economically and ecologically important host species. We used a genome resequencing approach to resolve the evolutionary history of an important microbial pathogen, the chytrid Batrachochytrium dendrobatidis (Bd), which has been implicated in amphibian declines worldwide. We sequenced the genomes of 29 isolates of Bd from around the world, with an emphasis on North, Central, and South America because of the devastating effect that Bd has had on amphibian populations in the New World. We found a substantial amount of evolutionary complexity in Bd with deep phylogenetic diversity that predates observed global amphibian declines. By investigating the entire genome, we found that even the most recently evolved Bd clade (termed the global panzootic lineage) contained more genetic variation than previously reported. We also found dramatic differences among isolates and among genomic regions in chromosomal copy number and patterns of heterozygosity, suggesting complex and heterogeneous genome dynamics. Finally, we report evidence for selection acting on the Bd genome, supporting the hypothesis that protease genes are important in evolutionary transitions in this group. Bd is considered an emerging pathogen because of its recent effects on amphibians, but our data indicate that it has a complex evolutionary history that predates recent disease outbreaks. Therefore, it is important to consider the contemporary effects of Bd in a broader evolutionary context and identify specific mechanisms that may have led to shifts in virulence in this system.

Journal ArticleDOI
TL;DR: In this article, the anisotropy of the azimuthal distributions of charged particles produced in √s_(NN)=2.76 TeV PbPb collisions with the CMS experiment at the LHC is studied with the event plane method, two-and fourparticle cumulants, and Lee-Yang zeros.
Abstract: The anisotropy of the azimuthal distributions of charged particles produced in √s_(NN)=2.76 TeV PbPb collisions is studied with the CMS experiment at the LHC. The elliptic anisotropy parameter, v_2, defined as the second coefficient in a Fourier expansion of the particle invariant yields, is extracted using the event-plane method, two- and four-particle cumulants, and Lee-Yang zeros. The anisotropy is presented as a function of transverse momentum (p_T), pseudorapidity (η) over a broad kinematic range, 0.3

Journal ArticleDOI
TL;DR: This trick employs a special mixture of three primers, creating a degeneracy of 22 unique codons coding for the 20 canonical amino acids, and it is shown that this strategy is suitable for any saturation mutagenesis methodology to generate less-redundant libraries.
Abstract: Saturation mutagenesis probes define sections of the vast protein sequence space. However, even if randomization is limited this way, the combinatorial numbers problem is severe. Because diversity is created at the codon level, codon redundancy is a crucial factor determining the necessary effort for library screening. Additionally, due to the probabilistic nature of the sampling process, oversampling is required to ensure library completeness as well as a high probability to encounter all unique variants. Our trick employs a special mixture of three primers, creating a degeneracy of 22 unique codons coding for the 20 canonical amino acids. Therefore, codon redundancy and subsequent screening effort is significantly reduced, and a balanced distribution of codon per amino acid is achieved, as demonstrated exemplarily for a library of cyclohexanone monooxygenase. We show that this strategy is suitable for any saturation mutagenesis methodology to generate less-redundant libraries.

Journal ArticleDOI
TL;DR: In particular, the optimal contract duration is shorter in demand states where the revenue cap binds as discussed by the authors, and their results also have implications for budgetary accounting of PPPs as they show that their fiscal impact resembles that of public provision, rather than privatization.
Abstract: Public–private partnerships (PPPs) have been justified because they release public funds or save on distortionary taxes. However, the resources saved by a government that does not finance the upfront investment are offset by giving up future revenue flows to the concessionaire. If a PPP can be justified on efficiency grounds, the PPP contract that optimally balances demand risk, user-fee distortions, and the opportunity cost of public funds has a minimum revenue guarantee and a revenue cap. The optimal contract can be implemented via a competitive auction with reasonable informational requirements. The optimal revenue guarantees, revenue sharing agreements, and auction mechanisms are different from those observed in the real world. In particular, the optimal contract duration is shorter in demand states where the revenue cap binds. These results also have implications for budgetary accounting of PPPs, as they show that their fiscal impact resembles that of public provision, rather than privatization.

Journal ArticleDOI
TL;DR: In this article, a co-precipitation method was used to synthesize Fe3O4 magnetic nanoparticles for the treatment of synthetic aqueous solutions contaminated by metal ions.
Abstract: Fe3O4 magnetic nanoparticles were synthesized by co-precipitation method. The structural characterization showed an average nanoparticle size of 8 nm. The synthesized Fe3O4 nanoparticles were tested for the treatment of synthetic aqueous solutions contaminated by metal ions, i.e. Pb(II), Cu(II), Zn(II) and Mn(II). Experimental results show that the adsorption capacity of Fe3O4 nanoparticles is maximum for Pb(II) and minimum for Mn(II), likely due to a different electrostatic attraction between heavy metal cations and negatively charged adsorption sites, mainly related to the hydrated ionic radii of the investigated heavy metals. Various factors influencing the adsorption of metal ions, e.g., pH, temperature, and contacting time were investigated to optimize the operating condition for the use of Fe3O4 nanoparticles as adsorbent. The experimental results indicated that the adsorption is strongly influenced by pH and temperature, the effect depending on the different metal ion considered.

Journal ArticleDOI
S. Chatrchyan1, Vardan Khachatryan1, Albert M. Sirunyan1, Armen Tumasyan1  +3880 moreInstitutions (142)
TL;DR: In this paper, an inclusive search for supersymmetric processes that produce final states with jets and missing transverse energy is performed in pp collisions at a centre-of-mass energy of 8 TeV.
Abstract: An inclusive search for supersymmetric processes that produce final states with jets and missing transverse energy is performed in pp collisions at a centre-of-mass energy of 8 TeV. The data sample corresponds to an integrated luminosity of 11.7 fb−1 collected by the CMS experiment at the LHC. In this search, a dimensionless kinematic variable, α T, is used to discriminate between events with genuine and misreconstructed missing transverse energy. The search is based on an examination of the number of reconstructed jets per event, the scalar sum of transverse energies of these jets, and the number of these jets identified as originating from bottom quarks. No significant excess of events over the standard model expectation is found. Exclusion limits are set in the parameter space of simplified models, with a special emphasis on both compressed-spectrum scenarios and direct or gluino-induced production of third-generation squarks. For the case of gluino-mediated squark production, gluino masses up to 950–1125 GeV are excluded depending on the assumed model. For the direct pair-production of squarks, masses up to 450 GeV are excluded for a single light first- or second-generation squark, increasing to 600 GeV for bottom squarks.

Journal ArticleDOI
TL;DR: This work characterized neuronal avalanches – spatiotemporal waves of enhanced activity - from dense intracranial depth recordings in humans and showed that avalanche distributions closely follow a power law – the hallmark feature of SOC - for each vigilance state.
Abstract: Neuronal activity differs between wakefulness and sleep states. In contrast, an attractor state, called self-organized critical (SOC), was proposed to govern brain dynamics because it allows for optimal information coding. But is the human brain SOC for each vigilance state despite the variations in neuronal dynamics? We characterized neuronal avalanches – spatiotemporal waves of enhanced activity - from dense intracranial depth recordings in humans. We showed that avalanche distributions closely follow a power law – the hallmark feature of SOC - for each vigilance state. However, avalanches clearly differ with vigilance states: slow wave sleep (SWS) shows large avalanches, wakefulness intermediate, and rapid eye movement (REM) sleep small ones. Our SOC model, together with the data, suggested first that the differences are mediated by global but tiny changes in synaptic strength, and second, that the changes with vigilance states reflect small deviations from criticality to the subcritical regime, implying that the human brain does not operate at criticality proper but close to SOC. Independent of criticality, the analysis confirms that SWS shows increased correlations between cortical areas, and reveals that REM sleep shows more fragmented cortical dynamics.

Journal ArticleDOI
TL;DR: In this article, the LHC proton-proton collisions at √s=7'TeV, corresponding to 5.0'fb-1 of integrated luminosity, have been collected with the CMS detector.
Abstract: Measurements of inclusive jet and dijet production cross sections are presented. Data from LHC proton-proton collisions at √s=7 TeV, corresponding to 5.0 fb-1 of integrated luminosity, have been collected with the CMS detector. Jets are reconstructed up to rapidity 2.5, transverse momentum 2 TeV, and dijet invariant mass 5 TeV, using the anti-kT clustering algorithm with distance parameter R=0.7. The measured cross sections are corrected for detector effects and compared to perturbative QCD predictions at next-to-leading order, using five sets of parton distribution functions.

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TL;DR: In this article, the first study of isolated photon + jet correlations in relativistic heavy ion collisions is reported using data from PbPb collisions at a centre-of-mass energy of 2.76 TeV2.

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TL;DR: In this paper, a general formalism to model polytropic general relativistic stars with anisotropic pressure was proposed, where the Tolman mass was invoked to explain some features of the models.
Abstract: We set up in detail the general formalism to model polytropic general relativistic stars with anisotropic pressure. We shall consider two different possible polytropic equations, all of which yield the same Lane-Emden equation in the Newtonian limit. A heuristic model based on an ansatz to obtain anisotropic matter solutions from known solutions for isotropic matter is adopted to illustrate the effects of the pressure anisotropy on the structure of the star. In this context, the Tolman mass, which is a measure of the active gravitational mass, is invoked to explain some features of the models. Prospective extensions of the proposed approach are pointed out.

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29 Jul 2013-PLOS ONE
TL;DR: It is shown that using a standard multiplex and paired-end Illumina sequencing approach, genome-scale sequence data can be generated reliably from dry-preserved plant, fungal and insect specimens collected up to 115 years ago, and with minimal destructive sampling.
Abstract: Unlocking the vast genomic diversity stored in natural history collections would create unprecedented opportunities for genome-scale evolutionary, phylogenetic, domestication and population genomic studies. Many researchers have been discouraged from using historical specimens in molecular studies because of both generally limited success of DNA extraction and the challenges associated with PCR-amplifying highly degraded DNA. In today's next-generation sequencing (NGS) world, opportunities and prospects for historical DNA have changed dramatically, as most NGS methods are actually designed for taking short fragmented DNA molecules as templates. Here we show that using a standard multiplex and paired-end Illumina sequencing approach, genome-scale sequence data can be generated reliably from dry-preserved plant, fungal and insect specimens collected up to 115 years ago, and with minimal destructive sampling. Using a reference-based assembly approach, we were able to produce the entire nuclear genome of a 43-year-old Arabidopsis thaliana (Brassicaceae) herbarium specimen with high and uniform sequence coverage. Nuclear genome sequences of three fungal specimens of 22–82 years of age (Agaricus bisporus, Laccaria bicolor, Pleurotus ostreatus) were generated with 81.4–97.9% exome coverage. Complete organellar genome sequences were assembled for all specimens. Using de novo assembly we retrieved between 16.2–71.0% of coding sequence regions, and hence remain somewhat cautious about prospects for de novo genome assembly from historical specimens. Non-target sequence contaminations were observed in 2 of our insect museum specimens. We anticipate that future museum genomics projects will perhaps not generate entire genome sequences in all cases (our specimens contained relatively small and low-complexity genomes), but at least generating vital comparative genomic data for testing (phylo)genetic, demographic and genetic hypotheses, that become increasingly more horizontal. Furthermore, NGS of historical DNA enables recovering crucial genetic information from old type specimens that to date have remained mostly unutilized and, thus, opens up a new frontier for taxonomic research as well.

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TL;DR: In this paper, a linear correlation between the formulation variables, which are characteristic parameters of the substances as well as the temperature, is used to determine an optimum formulation and to characterize unknown surfactants and oils.
Abstract: Enhanced recovery of crude oil by surfactant flooding requires the attainment of an ultralow interfacial tension. Since Winsor’s work in the 1950s it has been known that a minimum interfacial tension and a concomitant three-phase behavior of a surfactant–oil–water system occurs when the interactions of the surfactant and the oil and water phases are exactly equal. It has been known since the 1970s that these conditions are attained when a linear correlation is satisfied between the formulation variables, which are characteristic parameters of the substances as well as the temperature. This first part of our review on how to attain ultralow interfacial tension for enhanced oil recovery shows how formulation scan techniques using these correlations are used to determine an optimum formulation and to characterize unknown surfactants and oils. The physicochemical significance of the original empirical correlation is reported as the surfactant affinity difference or hydrophilic–lipophilic deviation model. We report the range of accurate validity of, and how to test, this simple model with four variables.