University of Los Andes

About: University of Los Andes is a education organization based out in Bogotá, Colombia. It is known for research contribution in the topics: Population & Large Hadron Collider. The organization has 17616 authors who have published 25555 publications receiving 413463 citations.

Human Carcinogenesis and Bracken Fern: A Review of the Evidence

Abstract: The complex taxon embraced in the Pteridium genus, popularly known as bracken fern and notorious weeds in many parts of the world, is one of the few vascular plants known to induce cancer naturally in animals. It has been known for long to be acutely toxic to livestock and sublethal chronic oral feeding of bracken fronds leads to cancerous lesions in the urinary bladder, or bovine enzootic haematuria (BEH) and ileum of cattle. Bracken poisoning has been attributed chiefly to ptaquiloside, a norsesqui-terpene which is also a potent carcinogen inducing various malignancies in laboratory animals. It is capable of alkylating uncoiled DNAbases at key proto-oncogenes of selected organs. Some human populations also eat young bracken shoots and epidemiological studies in Japan and Brazil have shown a close association between bracken consumption and cancers of the upper alimentary tract. In addition, other studies reveal that the mere presence of bracken swards represents a greater risk to die of gastric adenocarcinoma for people who live more than 20 years in such areas or are exposed in childhood. This work reviews the bracken-cancer connections established by in vitro and in vivo experiments and epidemiological studies in various parts of the world, and provides insights into the possible bridges for bracken carcinogens to reach the human diet. Also, specific points where more research is needed are highlighted.

Search for narrow resonances using the dijet mass spectrum in pp collisions at √s=8 TeV

Abstract: Results are presented of a search for the production of new particles decaying to pairs of partons (quarks, antiquarks, or gluons), in the dijet mass spectrum in proton-proton collisions at sqrt(s) = 8 TeV. The data sample corresponds to an integrated luminosity of 4.0 inverse femtobarns, collected with the CMS detector at the LHC in 2012. No significant evidence for narrow resonance production is observed. Upper limits are set at the 95% confidence level on the production cross section of hypothetical new particles decaying to quark-quark, quark-gluon, or gluon-gluon final states. These limits are then translated into lower limits on the masses of new resonances in specific scenarios of physics beyond the standard model. The limits reach up to 4.8 TeV, depending on the model, and extend previous exclusions from similar searches performed at lower collision energies. For the first time mass limits are set for the Randall-Sundrum graviton model in the dijet channel.

Universal target-enrichment baits for anthozoan (Cnidaria) phylogenomics: New approaches to long-standing problems.

Abstract: Anthozoans (e.g., corals, anemones) are an ecologically important and diverse group of marine metazoans that occur from shallow to deep waters worldwide. However, our understanding of the evolutionary relationships among the similar to 7,500 species within this class is hindered by the lack of phylogenetically informative markers that can be reliably sequenced across a diversity of taxa. We designed and tested 16,306 RNA baits to capture 720 ultraconserved element loci and 1,071 exon loci. Library preparation and target enrichment were performed on 33 taxa from all orders within the class Anthozoa. Following Illumina sequencing and Trinity assembly, we recovered 1,774 of 1,791 targeted loci. The mean number of loci recovered from each species was 638 +/- 222, with more loci recovered from octocorals (783 +/- 138 loci) than hexacorals (475 +/- 187 loci). Parsimony informative sites ranged from 26 to 49% for alignments at differing hierarchical taxonomic levels (e.g., Anthozoa, Octocorallia, Hexacorallia). The per cent of variable sites within each of three genera (Acropora, Alcyonium, and Sinularia) for which multiple species were sequenced ranged from 4.7% to 30%. Maximum-likelihood analyses recovered highly resolved trees with topologies matching those supported by other studies, including the monophyly of the order Scleractinia. Our results demonstrate the utility of this target-enrichment approach to resolve phylogenetic relationships from relatively old to recent divergences. Redesigning the baits with improved affinities to capture loci within each subclass will provide a valuable toolset to address systematic questions, further our understanding of the timing of diversifications and help resolve long-standing controversial relationships in the class Anthozoa.

A taxonomic revision of the Neotropical poison frog genus Ranitomeya (Amphibia: Dendrobatidae)

Abstract: The Neotropical poison frog genus Ranitomeya is revised, resulting in one new genus, one new species, five synonymies and one species classified as nomen dubium. We present an expanded molecular phylogeny that contains 235 terminals, 104 of which are new to this study. Notable additions to this phylogeny include seven of the 12 species in the minuta group, 15 Ranitomeya amazonica, 20 R. lamasi, two R. sirensis, 30 R. ventrimaculata and seven R. uakarii. Previous researchers have long recognized two distinct, reciprocally monophyletic species groups contained within Ranitomeya, sensu Grant et al. 2006: the ventrimaculata group, which is distributed throughout much of the Amazon, and the minuta group of the northern Andes and Central America. We restrict Ranitomeya to the former group and erect a new genus, Andinobates Twomey, Brown, Amezquita & Mejia-Vargas gen. nov., for members of the minuta group. Other major taxonomic results of the current revision include the following: (i) A new species, Ranitomeya toraro Brown, Caldwell, Twomey, Melo-Sampaio & Souza sp. nov., is described from western Brazil. This species has long been referred to as R. ventrimaculata but new morphological and phylogenetic data place it sister to R. defleri. (ii) Examination of the holotype of R. ventrimaculata revealed that this specimen is in fact a member of what is currently referred to as R. duellmani, therefore, Dendrobates duellmani Schulte 1999 is considered herein a junior synonym of D. ventrimaculatus Shreve 1935 (= R. ventrimaculata). (iii) For the frogs that were being called R. ventrimaculata prior to this revision, the oldest available and therefore applicable name is R. variabilis. Whereas previous definitions of R. variabilis were restricted to spotted highland frogs near Tarapoto, Peru, our data suggest that this color morph is conspecific with lowland striped counterparts. Therefore, the definition of R. variabilis is greatly expanded to include most frogs which were (prior to this revision) referred to as R. ventrimaculata. (iv) Phylogenetic and bioacoustic evidence support the retention of R. amazonica as a valid species related to R. variabilis as defined in this paper. Based on phylogenetic data, R. amazonica appears to be distributed throughout much of the lower Amazon, as far east as French Guiana and the Amazon Delta and as far west as Iquitos, Peru. (v) Behavioral and morphological data, as well as phylogenetic data which includes topotypic material of R. sirensis and numerous samples of R. lamasi, suggest that the names sirensis, lamasi and biolat are applicable to a single, widespread species that displays considerable morphological variation throughout its range. The oldest available name for this group is sirensis Aichinger; therefore, we expand the definition of R. sirensis. (vi) Ranitomeya ignea and R. intermedia, elevated to the species status in a previous revision, are placed as junior synonyms of R. reticulata and R. imitator, respectively. (vii) Ranitomeya rubrocephala is designated as nomen dubium. In addition to taxonomic changes, this revision includes the following: (i) Explicit definitions of species groups that are consistent with our proposed taxonomy. (ii) A comprehensive dichotomous key for identification of ‘small’ aposematic poison frogs of South and Central America. (iii) Detailed distribution maps of all Ranitomeya species, including unpublished localities for most species. In some cases, these records result in substantial range extensions (e.g., R. uakarii, R. fantastica). (iv) Tadpole descriptions for R. amazonica, R. flavovittata, R. imitator, R. toraro sp. nov., R. uakarii and R. variabilis; plus a summary of tadpole morphological data for Andinobates and Ranitomeya species. (v) A summary of call data on most members of Andinobates and Ranitomeya, including call data of several species that have not been published before. (vi) A discussion on the continued impacts of the pet trade on poison frogs (vii) A discussion on several cases of potential Mullerian mimicry within the genus Ranitomeya. We also give opinions regarding the current debate on recent taxonomic changes and the use of the name Ranitomeya.