Showing papers by "University of Rennes published in 2001"

Metabolism and function of polyamines in plants: recent development (new approaches)

Abstract: A review is presented of the recent developments in the metabolism andfunction of polyamines in plants. Polyamines appear to be involved in a widerange of plant processes so their exact role is not completely understood. Inthis review, the metabolic pathways involved in polyamine biosynthesis anddegradation are explained, along with the transport and conjugation of thesecompounds. The methodologies involved in the analysis of polyamine functionusing metabolic inhibitors and genetic and molecular approaches are described.The occurrence and distribution of polyamine-derived alkaloids are also dealtwith. The direction of future research in the study of plant polyamines isindicated.

Unsupervised classification of multifrequency and fully polarimetric SAR images based on the H/A/Alpha-Wishart classifier

Abstract: Introduces a new classification scheme for dual frequency polarimetric SAR data sets. A (6/spl times/6) polarimetric coherency matrix is defined to simultaneously take into account the full polarimetric information from both images. This matrix is composed of the two coherency matrices and their cross-correlation. A decomposition theorem is applied to both images to obtain 64 initial clusters based on their scattering characteristics. The data sets are then classified by an iterative algorithm based on a complex Wishart density function of the 6/spl times/6 matrix. A class number reduction technique is then applied on the 64 resulting clusters to improve the efficiency of the interpretation and representation of each class. An alternative technique is also proposed which introduces the polarimetric cross-correlation information to refine the results of classification to a small number of clusters using the conditional probability of the cross-correlation matrix. These classification schemes are applied to full polarimetric P, L, and C-band SAR images of the Nezer Forest, France, acquired by the NASA/JPL AIRSAR sensor in 1989.

Rhenium‐osmium isotope systematics and platinum group element concentrations: Loess and the upper continental crust

Abstract: [1] We investigate the use of loess as a proxy for the concentration and isotopic composition of highly siderophile elements, specifically Os, in the upper continental crust. The 187Os/188Os, platinum group element, and Re concentrations of 16 loess samples from China, Europe, and South America, previously analyzed for major, trace element, and Sr and Nd isotope composition, reveal subtle differences between loess provinces. Despite those differences, the 187Os/188Os of 1.05 ± 0.23 is surprisingly homogenous. Average 187Os/188Os as well as average Os (31 pg/g) and Ir (22 pg/g) concentrations are similar to the lower limit of previous estimates for average upper continental crust, whereas Ru, Pt, and Pd concentrations are intermediate between previous estimates. We argue that hydrogenous enrichment of Os in riverine sediments led Esser and Turekian [1993] to overestimate the Os concentration of upper continental crust (50 pg/g). On the basis of this argument and correlations with major and trace elements we propose that average platinum group element concentrations of loess (i.e., 31 pg Os/g, 22 pg Ir/g, 210 pg Ru/g, 510 pg Pt/g, 520 pg Pd/g) are a proxy for the upper continental crust. We further suggest that the nonchondritic average Os/Ir of 1.4 reflects the combined effects of radiogenic ingrowth of Os from Re decay over the mean lifetime of the upper continental crust and preferential return of Os to the crust during subduction. Rhenium concentrations scatter significantly, with highest values in loess derived from organic-rich sedimentary rocks. Low median Re concentrations most likely reflect depletion of loess in organic matter, an important sink for Re in the upper continental crust. An average 187Re/188Os of 34.5 was calculated on the basis of the measured 187Os/188Os and Nd model ages. This value corresponds to a Re concentration of 198 pg/g. Correcting measured 187Os/188Os = 1.05 and inferred 186Os/188Os = 0.119871 (from 190Pt/188Os = 0.0176) for the older mean age (2.2 Gyr) of upper continental crust compared to loess (1.6 Gyr) yields average upper crustal 187Os/188Os of 1.40 and 186Os/188Os of 0.119885.

Viruses in the mammalian male genital tract and their effects on the reproductive system.

Abstract: This review describes the various viruses identified in the semen and reproductive tracts of mammals (including humans), their distribution in tissues and fluids, their possible cell targets, and the functional consequences of their infectivity on the reproductive and endocrine systems. The consequences of these viral infections on the reproductive tract and semen can be extremely serious in terms of organ integrity, development of pathological and cancerous processes, and transmission of diseases. Furthermore, of essential importance is the fact that viral infection of the testicular cells may result not only in changes in testicular function, a serious risk for the fertility and general health of the individual (such as a fall in testosteronemia leading to cachexia), but also in the possible transmission of virus-induced mutations to subsequent generations. In addition to providing an exhaustive account of the data available in these domains, this review focuses attention on the fact that the interface between endocrinology and virology has so far been poorly explored, particularly when major health, social and economical problems are posed. Our conclusions highlight the research strategies that need to be developed. Progress in all these domains is essential for the development of new treatment strategies to eradicate viruses and to correct the virus-induced dysfunction of the endocrine system.

The Incompressible Limit of the Non-Isentropic Euler Equations

Abstract: We study the Euler equations for slightly compressible fluids, that is, after rescaling, the limits of the Euler equations of fluid dynamics as the Mach number tends to zero. In this paper, we consider the general non-isentropic equations and general data. We first prove the existence of classical solutions for a time independent of the small parameter. Then, on the whole space ℝ d , we prove that the solution converges to the solution of the incompressible Euler equations.

Over-stabilization of Candida antarctica lipase B by ionic liquids in ester synthesis

Abstract: Four different ionic liquids, based on dialkylimidazolium cations associated with perfluorinated and bis(trifluoromethyl)sulfonyl amide anions were used as reaction media for butyl butyrate synthesis catalyzed by free Candida antarctica lipase B at 2% (v/v) water content and 50 °C. Lipase had enhanced synthetic activity in all ionic liquids in comparison with two organic solvents (hexane, and 1-butanol), the enhanced activity being related to the increase in polarity of ionic liquids. The continuous operation of lipase with all the assayed ionic liquids showed over-stabilization of the enzyme. The reuse of free lipase in 1-butyl-3-methylimidazolium hexafluorophosphate in continuous operation cycles showed a half-life time 2300 times greater than that observed when the enzyme was incubated in the absence of substrate (3.2 h), and a selectivity higher than 90%.

Stabilization of alpha-chymotrypsin by ionic liquids in transesterification reactions.

Abstract: Five different ionic liquids, based on dialkylimidazolium and quaternary ammonium cations associated with perfluorinated and bis (trifluoromethyl) sulfonyl amide anions, were used as reaction media to synthesize N-acetyl-L-tyrosine propyl ester by transesterification with alpha-chymotrypsin at 2% (v/v) water content at 50 degrees C. The synthetic activity was reduced by the increase in alkyl chains length of cations and by increases in anion size, which was related to the decrease in polarity. Incubation of the enzyme (with and without substrate) in ionic liquids exhibited first-order deactivation kinetics at 50 degrees C, allowing determination of deactivation rate constants and half-life times (1-3 h). Ionic liquids showed a clear relative stabilization effect on the enzyme, which was improved by increased chain length of the alkyl substituents on the imidazolium ring cations and the anion size. This effect was 10-times enhanced by the presence of substrate. For example, 1-butyl-3-methylimidazolium hexafluorophosphate increased the alpha-chymotrypsin half-life by 200 times in the presence of substrate with respect to the 1-propanol medium. These results show that ionic liquids are excellent enzyme-stabilizing agents and reaction media for clean biocatalysis in non-conventional conditions.

A parallel FDTD algorithm using the MPI library

Abstract: In this paper, we describe the essential elements of a parallel algorithm for the FDTD method using the MPI (message passing interface) library. To simplify and accelerate the algorithm, an MPI Cartesian 2D topology is used. The inter-process communications are optimized by the use of derived data types. A general approach is also explained for parallelizing the auxiliary tools, such as far-field computation, thin-wire treatment, etc. For PMLs, we have used a new method that makes it unnecessary to split the field components. This considerably simplifies the computer programming, and is compatible with the parallel algorithm.

Phosphole-Containing π-Conjugated Systems: From Model Molecules to Polymer Films on Electrodes

Abstract: Two series of 2,5-dipyridyl- and 2,5-dithienylphosphole derivatives containing sigma3- or sigma4-P atoms were prepared, and their optical (UV/Vis absorption, fluorescence spectra) and electrochemical properties were systematically evaluated. These physical properties depend mainly on the natures of the 2,5-substituents and of the phosphorus moiety, and they revealed that these compounds contain extended pi-conjugated systems. Structure-property relationships were established on the basis of these experimental data and ab initio calculations on the parent molecules. The limited aromatic character and low-lying LUMO of the phosphole ring appear to be crucial for achieving a highly delocalised pi system. Electrooxidation of 2,5-dithienylphosphole derivatives affords electroactive films with low optical band gaps. As observed for the corresponding monomers, the optical and electrochemical properties of the polymers can be varied over a wide range by modifying the nature of the phosphorus moiety.

The Usf-1 transcription factor is a novel target for the stress-responsive p38 kinase and mediates UV-induced Tyrosinase expression.

Abstract: The stress-activated signalling cascade leading to phosphorylation of the p38 family of kinases plays a crucial role during development and in the cellular response to a wide variety of stress-inducing agents. Although alterations in gene expression characteristic of the stress response require the regulation of key transcription factors by the p38 family, few downstream targets for this signalling pathway have been identified. By examining the ability of pigment cells to respond to UV irradiation as part of the UV-induced tanning response, we show that while the microphthalmia-associated transcription factor Mitf regulates basal Tyrosinase expression, it is the ubiquitous basic helix–loop–helix-leucine zipper transcription factor Usf-1 that is required for the UV activation of the Tyrosinase promoter. Consistent with this we demonstrate that Usf-1 is phosphorylated and activated by the stress-responsive p38 kinase. The results suggest that activation of Usf-1 by p38 at a wide variety of viral and cellular promoters will provide a link between stimuli as diverse as UV irradiation, glucose, viral infection and pro-inflammatory cytokines, and the changes in gene expression associated with the stress response.

Nanoscale Push-Push Dihydrophenanthrene Derivatives as Novel Fluorophores for Two-Photon-Excited Fluorescence.

Abstract: Outperforming fluorescein by far, elongated fluorophores (e.g. 1) give rise to large two-photon absorption cross-sections σ2 in the visible-red or NIR region and high quantum fluorescence yields Φ (see figure; GM = 10-50 cm4 s photon-1 ). This opens interesting prospects in the field of two-photon microscopy imaging of cell membranes.

The role of vegetation and litter in the nitrogen dynamics of riparian buffer zones in Europe

Abstract: Plant uptake and denitrification are considered to be the most important processes responsible for N retention and mitigation in riparian buffers. In many riparian buffers, however, nutrients taken up by plants remain in the system only temporarily and may be gradually released by mineralization later. Still, plants increase the residence time of nutrients considerably by reducing their mobility. We investigated the importance of plant N uptake and N immobilization in litter for N retention in riparian buffers. Nitrogen uptake in vegetation and N dynamics in litter were measured over a two-year period in a range of forested and herbaceous riparian buffers along a climatic gradient in Europe, receiving different loadings of N-enriched groundwater. Plant production, nitrogen uptake, and N retention were significantly higher in the forested buffer sites compared to the herbaceous buffer sites. However, in herbaceous buffers, periodic harvesting of herbaceous biomass contributed considerably to the N retention. No relationship between lateral N loading and plant productivity or N uptake was observed; this indicated that plant growth was not N-limited. In the winter period, decaying leaf litter had a small but significant role in N retention in a majority of the riparian ecosystems studied. Moreover, no responses to the climatic gradient were found. Generally, we can state that annual N retention in the vegetation and litter compartment is substantial, making up 13–99% of the total N mitigation.

The electronic structure of tantalum (oxy)nitrides TaON and Ta3N5

Abstract: Detailed results of ab initio band structure calculations for tantalum (oxy)nitrides (TaON and Ta3N5) are reported. The calculations are performed within the framework of density functional theory (DFT). We compare results obtained with the molecular dynamics pseudopotential (PP) approach of the Vienna Ab initio Simulation Program (VASP) and the Full Potential Linearized Augmented Plane Waves method (FP-LAPW) using the WIEN97 program. In agreement with neutron diffraction measurements, we show an ordering of the anions in TaON. The calculations also show that the valence band is composed mainly of the anion 2p orbitals hybridized with Ta 5d states. For TaON the top of the valence band is dominated by N 2p states. The bottom of the conduction band is mainly composed of Ta 5d states. Both TaON and Ta3N5 are semiconductors with calculated indirect band gaps of respectively 1.8 and 1.1 eV (VASP calculations) and 2.0 and 1.2 eV (WIEN97 calculations). Optical diffuse-reflectance spectra show an energy gap of 2.08 eV for Ta3N5.

The S. pombe aurora-related kinase Ark1 associates with mitotic structures in a stage dependent manner and is required for chromosome segregation

Abstract: Metazoans contain three aurora-related kinases. Aurora A is required for spindle formation while aurora B is required for chromosome condensation and cytokinesis. Less is known about the function of aurora C. S. pombe contains a single aurora-related kinase, Ark1. Although Ark1 protein levels remained constant as cells progressed through the mitotic cell cycle, its distribution altered during mitosis and meiosis. Throughout G2 Ark1 was concentrated in one to three nuclear foci that were not associated with the spindle pole body/centromere complex. Following commitment to mitosis Ark1 associated with chromatin and was particularly concentrated at several sites including kinetochores/centromeres. Kinetochore/centromere association diminished during anaphase A, after which it was distributed along the spindle. The protein became restricted to a small central zone that transiently enlarged as the spindle extended. As in many other systems mitotic fission yeast cells exhibit a much greater degree of phosphorylation of serine 10 of histone H3 than interphase cells. A number of studies have linked this modification with chromosome condensation. Ark1 immuno-precipitates phosphorylated serine 10 of histone H3 in vitro. This activity was highest in mitotic extracts. The absence of the histone H3 phospho-serine 10 epitope from mitotic cells in which the ark1+ gene had been deleted (ark1.Δ1); the inability of these cells to resolve their chromosomes during anaphase and the co-localisation of this phospho-epitope with Ark1 early in mitosis, all suggest that Ark1 phosphorylates serine 10 of histone H3 in vivo. ark1.Δ1 cells also exhibited a reduction in kinetochore activity and a minor defect in spindle formation. Thus the enzyme activity, localisation and phenotype arising from our manipulations of this single fission yeast aurora kinase family member suggest that this single kinase is executing functions that are separately implemented by distinct aurora A and aurora B kinases in higher systems.

Molecular investigations in populations of Spartina anglica C.E. Hubbard (Poaceae) invading coastal Brittany (France).

Abstract: Spartina anglica is a classical example of recent alloploid speciation. It arose during the end of the nineteenth century in England by hybridization between the indigenous Spartina maritima and the introduced East-American Spartina alterniflora. Duplication of the hybrid genome (Spartina x townsendii) gave rise to a vigorous allopolyploid involved in natural and artificial invasions on different continents. Spartina anglica was first recorded in France in 1906, and since then, it has spread all along the western French coast. Earlier studies revealed that native British populations display consistent morphological plasticity and lack of isozyme variation. In this paper, we use different molecular markers (randomly amplified polymorphic DNA, intersimple sequence repeats and restriction patterns from nuclear and chloroplast DNA sequences) to analyse the genetic patterns of the French populations of S. anglica. Our results show that French populations are mainly composed of one "major" multilocus genotype. This genotype is identical to the first-generation hybrid S. x townsendii from England. Losses of few markers from this genotype are observed but are restricted to a few populations from Brittany; it is likely that they appeared independently, subsequent to their introduction. In southern Brittany, no hybrids between S. anglica and S. maritima have been found where the two species co-occur. All French populations of S. anglica display the same chloroplast DNA sequences as S. alterniflora, the maternal genome donor. These findings are consistent with a severe genetic bottleneck at the time of the species formation, as a consequence of a unique origin of the species. Both parental nuclear sequences are present in the allopolyploid populations, revealing that for the markers investigated, no extensive changes have occurred in this young species.