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Institution

University of São Paulo

EducationSão Paulo, Brazil
About: University of São Paulo is a education organization based out in São Paulo, Brazil. It is known for research contribution in the topics: Population & Context (language use). The organization has 136513 authors who have published 272320 publications receiving 5127869 citations. The organization is also known as: USP & Universidade de São Paulo.


Papers
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Journal ArticleDOI
Paul A. Northcott1, Paul A. Northcott2, David Shih2, John Peacock2, Livia Garzia2, A. Sorana Morrissy2, Thomas Zichner, Adrian M. Stütz, Andrey Korshunov1, Jüri Reimand2, Steven E. Schumacher3, Rameen Beroukhim4, Rameen Beroukhim3, David W. Ellison, Christian R. Marshall2, Anath C. Lionel2, Stephen C. Mack2, Adrian M. Dubuc2, Yuan Yao2, Vijay Ramaswamy2, Betty Luu2, Adi Rolider2, Florence M.G. Cavalli2, Xin Wang2, Marc Remke2, Xiaochong Wu2, Readman Chiu5, Andy Chu5, Eric Chuah5, Richard Corbett5, Gemma Hoad5, Shaun D. Jackman5, Yisu Li5, Allan Lo5, Karen Mungall5, Ka Ming Nip5, Jenny Q. Qian5, Anthony Raymond5, Nina Thiessen5, Richard Varhol5, Inanc Birol5, Richard A. Moore5, Andrew J. Mungall5, Robert A. Holt5, Daisuke Kawauchi, Martine F. Roussel, Marcel Kool1, David T.W. Jones1, Hendrick Witt6, Africa Fernandez-L7, Anna Kenney8, Robert J. Wechsler-Reya9, Peter B. Dirks2, Tzvi Aviv2, Wiesława Grajkowska, Marta Perek-Polnik, Christine Haberler10, Olivier Delattre11, Stéphanie Reynaud11, François Doz11, Sarah S. Pernet-Fattet12, Byung Kyu Cho13, Seung-Ki Kim13, Kyu-Chang Wang13, Wolfram Scheurlen, Charles G. Eberhart14, Michelle Fèvre-Montange15, Anne Jouvet15, Ian F. Pollack16, Xing Fan17, Karin M. Muraszko17, G. Yancey Gillespie18, Concezio Di Rocco19, Luca Massimi19, Erna M.C. Michiels20, Nanne K. Kloosterhof20, Pim J. French20, Johan M. Kros20, James M. Olson21, Richard G. Ellenbogen22, Karel Zitterbart23, Leos Kren23, Reid C. Thompson8, Michael K. Cooper8, Boleslaw Lach24, Boleslaw Lach25, Roger E. McLendon26, Darell D. Bigner26, Adam M. Fontebasso27, Steffen Albrecht28, Steffen Albrecht27, Nada Jabado27, Janet C. Lindsey29, Simon Bailey29, Nalin Gupta30, William A. Weiss30, László Bognár31, Almos Klekner31, Timothy E. Van Meter, Toshihiro Kumabe32, Teiji Tominaga32, Samer K. Elbabaa33, Jeffrey R. Leonard34, Joshua B. Rubin34, Linda M. Liau35, Erwin G. Van Meir36, Maryam Fouladi37, Hideo Nakamura38, Giuseppe Cinalli, Miklós Garami39, Peter Hauser39, Ali G. Saad40, Achille Iolascon41, Shin Jung42, Carlos Gilberto Carlotti43, Rajeev Vibhakar44, Young Shin Ra45, Shenandoah Robinson, Massimo Zollo41, Claudia C. Faria2, Jennifer A. Chan46, Michael J. Levy21, Poul H. Sorensen5, Matthew Meyerson3, Scott L. Pomeroy3, Yoon Jae Cho47, Gary D. Bader2, Uri Tabori2, Cynthia Hawkins2, Eric Bouffet2, Stephen W. Scherer2, James T. Rutka2, David Malkin2, Steven C. Clifford29, Steven J.M. Jones5, Jan O. Korbel, Stefan M. Pfister6, Stefan M. Pfister1, Marco A. Marra5, Michael D. Taylor2 
02 Aug 2012-Nature
TL;DR: Somatic copy number aberrations (SCNAs) in 1,087 unique medulloblastomas are reported, including recurrent events targeting TGF-β signalling in Group 3, and NF-κB signalling in Groups 4, which suggest future avenues for rational, targeted therapy.
Abstract: Medulloblastoma, the most common malignant paediatric brain tumour, is currently treated with nonspecific cytotoxic therapies including surgery, whole-brain radiation, and aggressive chemotherapy. As medulloblastoma exhibits marked intertumoural heterogeneity, with at least four distinct molecular variants, previous attempts to identify targets for therapy have been underpowered because of small samples sizes. Here we report somatic copy number aberrations (SCNAs) in 1,087 unique medulloblastomas. SCNAs are common in medulloblastoma, and are predominantly subgroup-enriched. The most common region of focal copy number gain is a tandem duplication of SNCAIP, a gene associated with Parkinson's disease, which is exquisitely restricted to Group 4α. Recurrent translocations of PVT1, including PVT1-MYC and PVT1-NDRG1, that arise through chromothripsis are restricted to Group 3. Numerous targetable SCNAs, including recurrent events targeting TGF-β signalling in Group 3, and NF-κB signalling in Group 4, suggest future avenues for rational, targeted therapy.

749 citations

Journal ArticleDOI
TL;DR: The results of these analyses, and the decision of the IARC Working Group to classify PM and outdoor air pollution as carcinogenic (Group 1), further justify efforts to reduce exposures to air pollutants that can arise from many sources.
Abstract: Background: Particulate matter (PM) in outdoor air pollution was recently designated a Group I carcinogen by the International Agency for Research on Cancer (IARC). This determination was based on ...

744 citations

Journal ArticleDOI
TL;DR: Antioxidant defenses against ROS in microbial cells and the use of ROS by antimicrobial host defense systems are covered and reactive nitrogen species and related therapeutics, such as acidified nitrite and nitric oxide-releasing nanoparticles are covered.
Abstract: Reactive oxygen species (ROS) can attack a diverse range of targets to exert antimicrobial activity, which accounts for their versatility in mediating host defense against a broad range of pathogens. Most ROS are formed by the partial reduction in molecular oxygen. Four major ROS are recognized comprising superoxide (O2•-), hydrogen peroxide (H2O2), hydroxyl radical (•OH), and singlet oxygen ((1)O2), but they display very different kinetics and levels of activity. The effects of O2•- and H2O2 are less acute than those of •OH and (1)O2, because the former are much less reactive and can be detoxified by endogenous antioxidants (both enzymatic and nonenzymatic) that are induced by oxidative stress. In contrast, no enzyme can detoxify •OH or (1)O2, making them extremely toxic and acutely lethal. The present review will highlight the various methods of ROS formation and their mechanism of action. Antioxidant defenses against ROS in microbial cells and the use of ROS by antimicrobial host defense systems are covered. Antimicrobial approaches primarily utilizing ROS comprise both bactericidal antibiotics and nonpharmacological methods such as photodynamic therapy, titanium dioxide photocatalysis, cold plasma, and medicinal honey. A brief final section covers reactive nitrogen species and related therapeutics, such as acidified nitrite and nitric oxide-releasing nanoparticles.

744 citations

Journal ArticleDOI
TL;DR: The ability to provide lifesaving treatments for AKI provides a compelling argument to consider therapy forAKI as much of a basic right as it is to give antiretroviral drugs to treat HIV in low-resource regions, especially because care needs only be given for a Published Online March 13, 2015 http://dx.doi.org/10.1016/ S0140-6736(15)60126-X

738 citations

Journal ArticleDOI
Florence M.G. Cavalli1, Marc Remke2, Marc Remke1, Marc Remke3, Ladislav Rampášek1, John Peacock1, David Shih1, Betty Luu1, Livia Garzia1, Jonathon Torchia1, Carolina Nor1, A. Sorana Morrissy1, Sameer Agnihotri4, Yuan Yao Thompson1, Claudia M. Kuzan-Fischer1, Hamza Farooq1, Keren Isaev5, Keren Isaev1, Craig Daniels1, Byung Kyu Cho6, Seung-Ki Kim6, Kyu-Chang Wang6, Ji Yeoun Lee6, Wiesława Grajkowska7, Marta Perek-Polnik7, Alexandre Vasiljevic, Cécile Faure-Conter, Anne Jouvet8, Caterina Giannini9, Amulya A. Nageswara Rao9, Kay Ka Wai Li10, Ho Keung Ng10, Charles G. Eberhart11, Ian F. Pollack4, Ronald L. Hamilton4, G. Yancey Gillespie12, James M. Olson13, James M. Olson14, Sarah Leary14, William A. Weiss15, Boleslaw Lach16, Boleslaw Lach17, Lola B. Chambless18, Reid C. Thompson18, Michael K. Cooper18, Rajeev Vibhakar19, Peter Hauser20, Marie Lise C. van Veelen21, Johan M. Kros21, Pim J. French21, Young Shin Ra22, Toshihiro Kumabe23, Enrique López-Aguilar24, Karel Zitterbart25, Jaroslav Sterba25, Gaetano Finocchiaro, Maura Massimino, Erwin G. Van Meir26, Satoru Osuka26, Tomoko Shofuda, Almos Klekner27, Massimo Zollo28, Jeffrey R. Leonard29, Joshua B. Rubin29, Nada Jabado30, Steffen Albrecht31, Steffen Albrecht30, Jaume Mora, Timothy E. Van Meter32, Shin Jung33, Andrew S. Moore34, Andrew R. Hallahan34, Jennifer A. Chan35, Daniela Pretti da Cunha Tirapelli36, Carlos Gilberto Carlotti36, Maryam Fouladi37, José Pimentel, Claudia C. Faria, Ali G. Saad38, Luca Massimi39, Linda M. Liau40, Helen Wheeler41, Hideo Nakamura42, Samer K. Elbabaa43, Mario Perezpeña-Diazconti, Fernando Chico Ponce de León, Shenandoah Robinson44, Michal Zapotocky1, Alvaro Lassaletta1, Annie Huang1, Cynthia Hawkins1, Uri Tabori1, Eric Bouffet1, Ute Bartels1, Peter B. Dirks1, James T. Rutka1, Gary D. Bader1, Jüri Reimand5, Jüri Reimand1, Anna Goldenberg1, Vijay Ramaswamy1, Michael D. Taylor1 
TL;DR: Similarity network fusion (SNF) applied to genome-wide DNA methylation and gene expression data across 763 primary samples identifies very homogeneous clusters of patients, supporting the presence of medulloblastoma subtypes.

737 citations


Authors

Showing all 138091 results

NameH-indexPapersCitations
George M. Whitesides2401739269833
Peter Libby211932182724
Robert C. Nichol187851162994
Paul M. Thompson1832271146736
Terrie E. Moffitt182594150609
Douglas R. Green182661145944
Richard B. Lipton1762110140776
Robin M. Murray1711539116362
George P. Chrousos1691612120752
David A. Bennett1671142109844
Barry M. Popkin15775190453
David H. Adams1551613117783
Joao Seixas1531538115070
Matthias Egger152901184176
Ichiro Kawachi149121690282
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Performance
Metrics
No. of papers from the Institution in previous years
YearPapers
20241
2023331
20222,547
202118,135
202017,960
201916,297