University of the Algarve

About: University of the Algarve is a education organization based out in Faro, Portugal. It is known for research contribution in the topics: Population & Tourism. The organization has 3649 authors who have published 10303 publications receiving 233536 citations.

Biopython: freely available Python tools for computational molecular biology and bioinformatics

Abstract: The Biopython project is a mature open source international collaboration of volunteer developers, providing Python libraries for a wide range of bioinformatics problems. Biopython includes modules for reading and writing different sequence. le formats and multiple sequence alignments, dealing with 3D macromolecular structures, interacting with common tools such as BLAST, ClustalW and EMBOSS, accessing key online databases, as well as providing numerical methods for statistical learning.

Performance assessment of multiobjective optimizers: an analysis and review

Abstract: An important issue in multiobjective optimization is the quantitative comparison of the performance of different algorithms. In the case of multiobjective evolutionary algorithms, the outcome is usually an approximation of the Pareto-optimal set, which is denoted as an approximation set, and therefore the question arises of how to evaluate the quality of approximation sets. Most popular are methods that assign each approximation set a vector of real numbers that reflect different aspects of the quality. Sometimes, pairs of approximation sets are also considered. In this study, we provide a rigorous analysis of the limitations underlying this type of quality assessment. To this end, a mathematical framework is developed which allows one to classify and discuss existing techniques.

Generic Mapping Tools: Improved Version Released

Abstract: Generic Mapping Tools (GMT) is an open-source software package for the analysis and display of geoscience data, helping scientists to analyze, interpolate, filter, manipulate, project, and plot time series and gridded data sets. The GMT toolbox includes about 80 core and 40 supplemental program modules sharing a common set of command options, file structures, and documentation. Its power to process data and produce publication-quality graphic presentations has made it vital to a large scientific community that now includes more than 25,000 individual users. GMT's website (http://gmt.soest.hawaii.edu/) exceeds 20,000 visits per month, and server logs show roughly 2000 monthly downloads.

The Hidden World within Plants: Ecological and Evolutionary Considerations for Defining Functioning of Microbial Endophytes

Abstract: All plants are inhabited internally by diverse microbial communities comprising bacterial, archaeal, fungal, and protistic taxa. These microorganisms showing endophytic lifestyles play crucial roles in plant development, growth, fitness, and diversification. The increasing awareness of and information on endophytes provide insight into the complexity of the plant microbiome. The nature of plant-endophyte interactions ranges from mutualism to pathogenicity. This depends on a set of abiotic and biotic factors, including the genotypes of plants and microbes, environmental conditions, and the dynamic network of interactions within the plant biome. In this review, we address the concept of endophytism, considering the latest insights into evolution, plant ecosystem functioning, and multipartite interactions.