University of Tokyo

About: University of Tokyo is a education organization based out in Tokyo, Japan. It is known for research contribution in the topics: Population & Gene. The organization has 134564 authors who have published 337567 publications receiving 10178620 citations. The organization is also known as: Todai & Universitas Tociensis.

Divergence time and evolutionary rate estimation with multilocus data.

Abstract: Bayesian methods for estimating evolutionary divergence times are extended to multigene data sets, and a technique is described for detecting correlated changes in evolutionary rates among genes. Simulations are employed to explore the effect of multigene data on divergence time estimation, and the methodology is illustrated with a previously published data set representing diverse plant taxa. The fact that evolutionary rates and times are confounded when sequence data are compared is emphasized and the importance of fossil information for disentangling rates and times is stressed.

Bone morphogenetic protein receptors and signal transduction

Abstract: Bone morphogenetic proteins (BMPs) exhibit broad spectra of biological activities in various tissues, including bone, cartilage, blood vessels, heart, kidney, neurons, liver and lung. BMPs are members of the transforming growth factor-beta (TGF-beta) family that bind to type II and type I serine-threonine kinase receptors, and transduce signals through Smad and non-Smad signalling pathways. Recent findings have revealed that BMP signalling is finely tuned by various mechanisms in both positive and negative fashions. Perturbations of BMP signalling pathways are linked to a wide variety of clinical disorders, including vascular diseases, skeletal diseases and cancer. Administration of recombinant BMP ligands and increasing endogenous expression of BMPs provide therapeutic effects on some diseases. The recent development of BMP receptor inhibitors may also prove useful for some clinical diseases induced by hyperactivation of the BMP signalling pathways.

Revising the Halofit Model for the Nonlinear Matter Power Spectrum

Abstract: Based on a suite of state-of-the-art high-resolution N-body simulations, we revisit the so-called halofit model as an accurate fitting formula for the nonlinear matter power spectrum. While the halofit model has frequently been used as a standard cosmological tool to predict the nonlinear matter power spectrum in a universe dominated by cold dark matter, its precision has been limited by the low resolution of N-body simulations used to determine the fitting parameters, suggesting the necessity of an improved fitting formula at small scales for future cosmological studies. We run high-resolution N-body simulations for 16 cosmological models around the Wilkinson Microwave Anisotropy Probe best-fit cosmological parameters (one-, three-, five-, and seven-year results), including dark energy models with a constant equation of state. The simulation results are used to re-calibrate the fitting parameters of the halofit model so as to reproduce small-scale power spectra of the N-body simulations, while keeping the precision at large scales. The revised fitting formula provides an accurate prediction of the nonlinear matter power spectrum in a wide range of wavenumbers (k ? 30 h?Mpc?1) at redshifts 0 ? z ? 10, with 5% precision for k ? 1 h?Mpc?1 at 0 ? z ? 10 and 10% for 1 ? k ? 10 h?Mpc?1 at 0 ? z ? 3. We discuss the impact of the improved halofit model on weak-lensing power spectra and correlation functions, and show that the improved model better reproduces ray-tracing simulation results.

Synthesis of iron fertilization experiments: From the iron age in the age of enlightenment

Abstract: Comparison of eight iron experiments shows that maximum Chl a, the maximum DIC removal, and the overall DIC/Fe efficiency all scale inversely with depth of the wind mixed layer (WML) defining the light environment. Moreover, lateral patch dilution, sea surface irradiance, temperature, and grazing play additional roles. The Southern Ocean experiments were most influenced by very deep WMLs. In contrast, light conditions were most favorable during SEEDS and SERIES as well as during IronEx-2. The two extreme experiments, EisenEx and SEEDS, can be linked via EisenEx bottle incubations with shallower simulated WML depth. Large diatoms always benefit the most from Fe addition, where a remarkably small group of thriving diatom species is dominated by universal response of Pseudo-nitzschia spp. Significant response of these moderate (10–30 μm), medium (30–60 μm), and large (>60 μm) diatoms is consistent with growth physiology determined for single species in natural seawater. The minimum level of “dissolved” Fe (filtrate < 0.2 μm) maintained during an experiment determines the dominant diatom size class. However, this is further complicated by continuous transfer of original truly dissolved reduced Fe(II) into the colloidal pool, which may constitute some 75% of the “dissolved” pool. Depth integration of carbon inventory changes partly compensates the adverse effects of a deep WML due to its greater integration depths, decreasing the differences in responses between the eight experiments. About half of depth-integrated overall primary productivity is reflected in a decrease of DIC. The overall C/Fe efficiency of DIC uptake is DIC/Fe ∼ 5600 for all eight experiments. The increase of particulate organic carbon is about a quarter of the primary production, suggesting food web losses for the other three quarters. Replenishment of DIC by air/sea exchange tends to be a minor few percent of primary CO2 fixation but will continue well after observations have stopped. Export of carbon into deeper waters is difficult to assess and is until now firmly proven and quite modest in only two experiments.

Matched-Transmission Technique for Channels With Intersymbol Interference

Abstract: A new transmission scheme for channels with intersymbol interference named "matched-transmission (MT) technique" is proposed An implementation of the MT system is presented and its relations with conventional techniques are described It is shown that the partial response scheme is a special case of our new technique The performance of the MT technique is discussed from the view point of the output signal-to-noise ratio and the system is shown to attain asymptotically the bound performance predicted by the information theory