University of Tokyo

About: University of Tokyo is a education organization based out in Tokyo, Japan. It is known for research contribution in the topics: Population & Gene. The organization has 134564 authors who have published 337567 publications receiving 10178620 citations. The organization is also known as: Todai & Universitas Tociensis.

International Union of Pharmacology. LXXXIX. Update on the Extended Family of Chemokine Receptors and Introducing a New Nomenclature for Atypical Chemokine Receptors

Abstract: Sixteen years ago, the Nomenclature Committee of the International Union of Pharmacology approved a system for naming human seven-transmembrane (7TM) G protein-coupled chemokine receptors, the large family of leukocyte chemoattractant receptors that regulates immune system development and function, in large part by mediating leukocyte trafficking. This was announced in Pharmacological Reviews in a major overview of the first decade of research in this field [Murphy PM, Baggiolini M, Charo IF, Hebert CA, Horuk R, Matsushima K, Miller LH, Oppenheim JJ, and Power CA (2000) Pharmacol Rev 52:145–176]. Since then, several new receptors have been discovered, and major advances have been made for the others in many areas, including structural biology, signal transduction mechanisms, biology, and pharmacology. New and diverse roles have been identified in infection, immunity, inflammation, development, cancer, and other areas. The first two drugs acting at chemokine receptors have been approved by the U.S. Food and Drug Administration (FDA), maraviroc targeting CCR5 in human immunodeficiency virus (HIV)/AIDS, and plerixafor targeting CXCR4 for stem cell mobilization for transplantation in cancer, and other candidates are now undergoing pivotal clinical trials for diverse disease indications. In addition, a subfamily of atypical chemokine receptors has emerged that may signal through arrestins instead of G proteins to act as chemokine scavengers, and many microbial and invertebrate G protein-coupled chemokine receptors and soluble chemokine-binding proteins have been described. Here, we review this extended family of chemokine receptors and chemokine-binding proteins at the basic, translational, and clinical levels, including an update on drug development. We also introduce a new nomenclature for atypical chemokine receptors with the stem ACKR (atypical chemokine receptor) approved by the Nomenclature Committee of the International Union of Pharmacology and the Human Genome Nomenclature Committee.

Formation of massive black holes through runaway collisions in dense young star clusters.

Abstract: A luminous X-ray source is associated with MGG 11—a cluster of young stars ∼200 pc from the centre of the starburst galaxy M 82 (refs 1, 2). The properties of this source are best explained3,4 by invoking a black hole with a mass of at least 350 solar masses (350 M⊙), which is intermediate between stellar-mass and supermassive black holes. A nearby but somewhat more massive cluster (MGG 9) shows no evidence of such an intermediate-mass black hole1,3, raising the issue of just what physical characteristics of the clusters can account for this difference. Here we report numerical simulations of the evolution and motion of stars within the clusters, where stars are allowed to merge with each other. We find that for MGG 11 dynamical friction leads to the massive stars sinking rapidly to the centre of the cluster, where they participate in a runaway collision. This produces a star of 800–3,000 M⊙, which ultimately collapses to a black hole of intermediate mass. No such runaway occurs in the cluster MGG 9, because the larger cluster radius leads to a mass segregation timescale a factor of five longer than for MGG 11.

Management of Hepatocellular Carcinoma in Japan: Consensus-Based Clinical Practice Guidelines Proposed by the Japan Society of Hepatology (JSH) 2010 Updated Version

Abstract: Hepatocellular carcinoma (HCC) is one of the leading causes of cancer death not only in Japan but also worldwide. Clinical practice guidelines for HCC were first published in 2001 by the European Soci

PrognoScan: a new database for meta-analysis of the prognostic value of genes

Abstract: In cancer research, the association between a gene and clinical outcome suggests the underlying etiology of the disease and consequently can motivate further studies. The recent availability of published cancer microarray datasets with clinical annotation provides the opportunity for linking gene expression to prognosis. However, the data are not easy to access and analyze without an effective analysis platform. To take advantage of public resources in full, a database named "PrognoScan" has been developed. This is 1) a large collection of publicly available cancer microarray datasets with clinical annotation, as well as 2) a tool for assessing the biological relationship between gene expression and prognosis. PrognoScan employs the minimum P-value approach for grouping patients for survival analysis that finds the optimal cutpoint in continuous gene expression measurement without prior biological knowledge or assumption and, as a result, enables systematic meta-analysis of multiple datasets. PrognoScan provides a powerful platform for evaluating potential tumor markers and therapeutic targets and would accelerate cancer research. The database is publicly accessible at http://gibk21.bse.kyutech.ac.jp/PrognoScan/index.html .

Arsenene: Two-dimensional buckled and puckered honeycomb arsenic systems

Abstract: Recently, phosphorene, a monolayer honeycomb structure of black phosphorus, was experimentally manufactured and has attracted rapidly growing interest. Motivated by phosphorene, here we investigate the stability and electronic properties of the honeycomb structure of the arsenic system based on first-principles calculations. Two types of honeycomb structures, buckled and puckered, are found to be stable. We call them arsenenes, as in the case of phosphorene. We find that both buckled and puckered arsenenes possess indirect gaps. We show that the band gap of puckered and buckled arsenenes can be tuned by applying strain. The gap closing occurs at 6% strain for puckered arsenene, where the bond angles between the nearest neighbors become nearly equal. An indirect-to-direct gap transition occurs by applying strain. Specifically, 1% strain is enough to transform puckered arsenene into a direct-gap semiconductor. We note that a bulk form of arsenic called gray arsenic exists which can be used as a precursor for buckled arsenene. Our results will pave the way for applications to light-emitting diodes and solar cells.