Showing papers by "University of Tsukuba published in 2019"

Marine heatwaves threaten global biodiversity and the provision of ecosystem services

Abstract: The global ocean has warmed substantially over the past century, with far-reaching implications for marine ecosystems. Concurrent with long-term persistent warming, discrete periods of extreme regional ocean warming (marine heatwaves, MHWs) have increased in frequency. Here we quantify trends and attributes of MHWs across all ocean basins and examine their biological impacts from species to ecosystems. Multiple regions in the Pacific, Atlantic and Indian Oceans are particularly vulnerable to MHW intensification, due to the co-existence of high levels of biodiversity, a prevalence of species found at their warm range edges or concurrent non-climatic human impacts. The physical attributes of prominent MHWs varied considerably, but all had deleterious impacts across a range of biological processes and taxa, including critical foundation species (corals, seagrasses and kelps). MHWs, which will probably intensify with anthropogenic climate change, are rapidly emerging as forceful agents of disturbance with the capacity to restructure entire ecosystems and disrupt the provision of ecological goods and services in coming decades.

Types and origins of bacterial membrane vesicles.

Abstract: Most bacteria release membrane vesicles (MVs) that contain specific cargo molecules and have diverse functions, including the transport of virulence factors, DNA transfer, interception of bacteriophages, antibiotics and eukaryotic host defence factors, cell detoxification and bacterial communication. MVs not only are abundant in nature but also show great promise for applications in biomedicine and nanotechnology. MVs were first discovered to originate from controlled blebbing of the outer membrane of Gram-negative bacteria and are therefore often called outer-membrane vesicles (OMVs). However, recent work has shown that Gram-positive bacteria can produce MVs, that different types of MVs besides OMVs exist and that, in addition to membrane blebbing, MVs can also be formed by endolysin-triggered cell lysis. In this Review, we provide an overview of the structures and compositions of the various vesicle types and discuss novel formation routes, which may lead to distinct vesicle types that serve particular functions.

Recent Third Pole’s Rapid Warming Accompanies Cryospheric Melt and Water Cycle Intensification and Interactions between Monsoon and Environment: Multidisciplinary Approach with Observations, Modeling, and Analysis

Abstract: The Third Pole (TP) is experiencing rapid warming and is currently in its warmest period in the past 2,000 years. This paper reviews the latest development in multidisciplinary TP research ...

The future of Blue Carbon science

Abstract: The term Blue Carbon (BC) was first coined a decade ago to describe the disproportionately large contribution of coastal vegetated ecosystems to global carbon sequestration. The role of BC in climate change mitigation and adaptation has now reached international prominence. To help prioritise future research, we assembled leading experts in the field to agree upon the top-ten pending questions in BC science. Understanding how climate change affects carbon accumulation in mature BC ecosystems and during their restoration was a high priority. Controversial questions included the role of carbonate and macroalgae in BC cycling, and the degree to which greenhouse gases are released following disturbance of BC ecosystems. Scientists seek improved precision of the extent of BC ecosystems; techniques to determine BC provenance; understanding of the factors that influence sequestration in BC ecosystems, with the corresponding value of BC; and the management actions that are effective in enhancing this value. Overall this overview provides a comprehensive road map for the coming decades on future research in BC science.

Active Sites and Mechanism of Oxygen Reduction Reaction Electrocatalysis on Nitrogen-Doped Carbon Materials.

Abstract: The oxygen reduction reaction (ORR) is a core reaction for electrochemical energy technologies such as fuel cells and metal-air batteries. ORR catalysts have been limited to platinum, which meets the requirements of high activity and durability. Over the last few decades, a variety of materials have been tested as non-Pt catalysts, from metal-organic complex molecules to metal-free catalysts. In particular, nitrogen-doped graphitic carbon materials, including N-doped graphene and N-doped carbon nanotubes, have been extensively studied. However, due to the lack of understanding of the reaction mechanism and conflicting knowledge of the catalytic active sites, carbon-based catalysts are still under the development stage of achieving a performance similar to Pt-based catalysts. In addition to the catalytic viewpoint, designing mass transport pathways is required for O2 . Recently, the importance of pyridinic N for the creation of active sites for ORR and the requirement of hydrophobicity near the active sites have been reported. Based on the increased knowledge in controlling ORR performances, bottom-up preparation of N-doped carbon catalysts, using N-containing conjugative molecules as the assemblies of the catalysts, is promising. Here, the recent understanding of the active sites and the mechanism of ORRs on N-doped carbon catalysts are reviewed.

2019 HRS/EHRA/APHRS/LAHRS expert consensus statement on catheter ablation of ventricular arrhythmias.

Abstract: Ventricular arrhythmias are an important cause of morbidity and mortality and come in a variety of forms, from single premature ventricular complexes to sustained ventricular tachycardia and fibrillation. Rapid developments have taken place over the past decade in our understanding of these arrhythmias and in our ability to diagnose and treat them. The field of catheter ablation has progressed with the development of new methods and tools, and with the publication of large clinical trials. Therefore, global cardiac electrophysiology professional societies undertook to outline recommendations and best practices for these procedures in a document that will update and replace the 2009 EHRA/HRS Expert Consensus on Catheter Ablation of Ventricular Arrhythmias. An expert writing group, after reviewing and discussing the literature, including a systematic review and meta-analysis published in conjunction with this document, and drawing on their own experience, drafted and voted on recommendations and summarized current knowledge and practice in the field. Each recommendation is presented in knowledge byte format and is accompanied by supportive text and references. Further sections provide a practical synopsis of the various techniques and of the specific ventricular arrhythmia sites and substrates encountered in the electrophysiology lab. The purpose of this document is to help electrophysiologists around the world to appropriately select patients for catheter ablation, to perform procedures in a safe and efficacious manner, and to provide follow-up and adjunctive care in order to obtain the best possible outcomes for patients with ventricular arrhythmias.

Narcolepsy - clinical spectrum, aetiopathophysiology, diagnosis and treatment.

Abstract: Narcolepsy is a rare brain disorder that reflects a selective loss or dysfunction of orexin (also known as hypocretin) neurons of the lateral hypothalamus. Narcolepsy type 1 (NT1) is characterized by excessive daytime sleepiness and cataplexy, accompanied by sleep-wake symptoms, such as hallucinations, sleep paralysis and disturbed sleep. Diagnosis is based on these clinical features and supported by biomarkers: evidence of rapid eye movement sleep periods soon after sleep onset; cerebrospinal fluid orexin deficiency; and positivity for HLA-DQB1*06:02. Symptomatic treatment with stimulant and anticataplectic drugs is usually efficacious. This Review focuses on our current understanding of how genetic, environmental and immune-related factors contribute to a prominent (but not isolated) orexin signalling deficiency in patients with NT1. Data supporting the view of NT1 as a hypothalamic disorder affecting not only sleep-wake but also motor, psychiatric, emotional, cognitive, metabolic and autonomic functions are presented, along with uncertainties concerning the 'narcoleptic borderland', including narcolepsy type 2 (NT2). The limitations of current diagnostic criteria for narcolepsy are discussed, and a possible new classification system incorporating the borderland conditions is presented. Finally, advances and obstacles in the symptomatic and causal treatment of narcolepsy are reviewed.

LiteBIRD: A Satellite for the Studies of B-Mode Polarization and Inflation from Cosmic Background Radiation Detection

Abstract: LiteBIRD is a candidate satellite for a strategic large mission of JAXA. With its expected launch in the middle of the 2020s with a H3 rocket, LiteBIRD plans to map the polarization of the cosmic microwave background radiation over the full sky with unprecedented precision. The full success of LiteBIRD is to achieve $\delta r < 0.001$ , where $\delta r$ is the total error on the tensor-to-scalar ratio r. The required angular coverage corresponds to $2 \le \ell \le 200$ , where $\ell $ is the multipole moment. This allows us to test well-motivated cosmic inflation models. Full-sky surveys for 3 years at a Lagrangian point L2 will be carried out for 15 frequency bands between 34 and 448 GHz with two telescopes to achieve the total sensitivity of 2.5 $\upmu $ K arcmin with a typical angular resolution of 0.5$^\circ $ at 150 GHz. Each telescope is equipped with a half-wave plate system for polarization signal modulation and a focal plane filled with polarization-sensitive TES bolometers. A cryogenic system provides a 100 mK base temperature for the focal planes and 2 K and 5 K stages for optical components.

Transition-Metal-Mediated and -Catalyzed C-F Bond Activation by Fluorine Elimination.

Abstract: The activation of carbon-fluorine (C-F) bonds is an important topic in synthetic organic chemistry. Metal-mediated and -catalyzed elimination of β- or α-fluorine proceeds under milder conditions than oxidative addition to C-F bonds. The β- or α-fluorine elimination is initiated from organometallic intermediates having fluorine substituents on carbon atoms β or α to metal centers, respectively. Transformations through these elimination processes (C-F bond cleavage), which are typically preceded by carbon-carbon (or carbon-heteroatom) bond formation, have been increasingly developed in the past five years as C-F bond activation methods. In this Minireview, we summarize the applications of transition-metal-mediated and -catalyzed fluorine elimination to synthetic organic chemistry from a historical perspective with early studies and from a systematic perspective with recent studies.

Cryogenic-based CO2 capture technologies: State-of-the-art developments and current challenges

Abstract: CO2 capture, utilization and storage has been recognized as a primary option to mitigate the issue of climate change caused by the utilization of fossil fuels. Several CO2 capture strategies have b ...

Symmetry-protected exceptional rings in two-dimensional correlated systems with chiral symmetry

Abstract: Emergence of exceptional points in two dimensions is one of the remarkable phenomena in non-Hermitian systems. We here elucidate the impacts of symmetry on the non-Hermitian physics. Specifically, we analyze chiral symmetric correlated systems in equilibrium where the non-Hermitian phenomena are induced by the finite lifetime of quasiparticles. Intriguingly, our analysis reveals that the combination of symmetry and non-Hermiticity results in topological degeneracies of energy bands which we call symmetry-protected exceptional rings (SPERs). We observe the emergence of SPERs by analyzing a non-Hermitian Dirac Hamiltonian. Furthermore, by employing the dynamical mean-field theory, we demonstrate the emergence of SPERs in a correlated honeycomb lattice model whose single-particle spectrum is described by a non-Hermitian Dirac Hamiltonian. We uncover that the SPERs survive even beyond the non-Hermitian Dirac Hamiltonian, which is related to a zeroth Chern number. The argument of symmetry protection also holds for three dimensions, elucidating the presence of a symmetry-protected exceptional torus.

Combination of searches for invisible Higgs boson decays with the ATLAS experiment

Abstract: Dark matter particles, if sufficiently light, may be produced in decays of the Higgs boson. This Letter presents a statistical combination of searches for H→invisible decays where H is produced according to the standard model via vector boson fusion, Z(ll)H, and W/Z(had)H, all performed with the ATLAS detector using 36.1 fb^{-1} of pp collisions at a center-of-mass energy of sqrt[s]=13 TeV at the LHC. In combination with the results at sqrt[s]=7 and 8 TeV, an exclusion limit on the H→invisible branching ratio of 0.26(0.17_{-0.05}^{+0.07}) at 95% confidence level is observed (expected).

Notes, outline and divergence times of Basidiomycota

Abstract: The Basidiomycota constitutes a major phylum of the kingdom Fungi and is second in species numbers to the Ascomycota. The present work provides an overview of all validly published, currently used basidiomycete genera to date in a single document. An outline of all genera of Basidiomycota is provided, which includes 1928 currently used genera names, with 1263 synonyms, which are distributed in 241 families, 68 orders, 18 classes and four subphyla. We provide brief notes for each accepted genus including information on classification, number of accepted species, type species, life mode, habitat, distribution, and sequence information. Furthermore, three phylogenetic analyses with combined LSU, SSU, 5.8s, rpb1, rpb2, and ef1 datasets for the subphyla Agaricomycotina, Pucciniomycotina and Ustilaginomycotina are conducted, respectively. Divergence time estimates are provided to the family level with 632 species from 62 orders, 168 families and 605 genera. Our study indicates that the divergence times of the subphyla in Basidiomycota are 406–430 Mya, classes are 211–383 Mya, and orders are 99–323 Mya, which are largely consistent with previous studies. In this study, all phylogenetically supported families were dated, with the families of Agaricomycotina diverging from 27–178 Mya, Pucciniomycotina from 85–222 Mya, and Ustilaginomycotina from 79–177 Mya. Divergence times as additional criterion in ranking provide additional evidence to resolve taxonomic problems in the Basidiomycota taxonomic system, and also provide a better understanding of their phylogeny and evolution.

Metal and Nonmetal Codoped 3D Nanoporous Graphene for Efficient Bifunctional Electrocatalysis and Rechargeable Zn–Air Batteries

Abstract: Developing bifunctional electrocatalysts with high activities and long durability for the oxygen reduction reaction (ORR) and oxygen evolution reaction (OER) is crucial toward the practical implementation of rechargeable metal-air batteries. Here, a 3D nanoporous graphene (np-graphene) doped with both N and Ni single atoms/clusters is reported. The predoping of N by chemical vapor deposition (CVD) dramatically increases the Ni doping amount and stability. The resulting N and Ni codoped np-graphene has excellent electrocatalytic activities for both the ORR and the OER in alkaline aqueous solutions. The synergetic effects of N and Ni dopants are revealed by density functional theory calculations. The free-standing Ni,N codoped 3D np-graphene shows great potential as an economical catalyst/electrode for metal-air batteries.

Electron and photon performance measurements with the ATLAS detector using the 2015-2017 LHC proton-proton collision data

Abstract: This paper describes the reconstruction of electrons and photons with the ATLAS detector, employed for measurements and searches exploiting the complete LHC Run 2 dataset. An improved energy clustering algorithm is introduced, and its implications for the measurement and identification of prompt electrons and photons are discussed in detail. Corrections and calibrations that affect performance, including energy calibration, identification and isolation efficiencies, and the measurement of the charge of reconstructed electron candidates are determined using up to 81 fb−1 of proton-proton collision data collected at √s=13 TeV between 2015 and 2017.

Deep-learning-based, computer-aided classifier developed with a small dataset of clinical images surpasses board-certified dermatologists in skin tumour diagnosis.

Abstract: BACKGROUND Application of deep-learning technology to skin cancer classification can potentially improve the sensitivity and specificity of skin cancer screening, but the number of training images required for such a system is thought to be extremely large. OBJECTIVES To determine whether deep-learning technology could be used to develop an efficient skin cancer classification system with a relatively small dataset of clinical images. METHODS A deep convolutional neural network (DCNN) was trained using a dataset of 4867 clinical images obtained from 1842 patients diagnosed with skin tumours at the University of Tsukuba Hospital from 2003 to 2016. The images consisted of 14 diagnoses, including both malignant and benign conditions. Its performance was tested against 13 board-certified dermatologists and nine dermatology trainees. RESULTS The overall classification accuracy of the trained DCNN was 76·5%. The DCNN achieved 96·3% sensitivity (correctly classified malignant as malignant) and 89·5% specificity (correctly classified benign as benign). Although the accuracy of malignant or benign classification by the board-certified dermatologists was statistically higher than that of the dermatology trainees (85·3% ± 3·7% and 74·4% ± 6·8%, P < 0·01), the DCNN achieved even greater accuracy, as high as 92·4% ± 2·1% (P < 0·001). CONCLUSIONS We have developed an efficient skin tumour classifier using a DCNN trained on a relatively small dataset. The DCNN classified images of skin tumours more accurately than board-certified dermatologists. Collectively, the current system may have capabilities for screening purposes in general medical practice, particularly because it requires only a single clinical image for classification.

ATLAS b-jet identification performance and efficiency measurement with tt¯ events in pp collisions at √s = 13 TeV

Abstract: The algorithms used by the ATLAS Collaboration during Run 2 of the Large Hadron Collider to identify jets containing b-hadrons are presented. The performance of the algorithms is evaluated in the s ...

Thermoelectric performance of a metastable thin-film Heusler alloy

Abstract: Thermoelectric materials transform a thermal gradient into electricity. The efficiency of this process relies on three material-dependent parameters: the Seebeck coefficient, the electrical resistivity and the thermal conductivity, summarized in the thermoelectric figure of merit. A large figure of merit is beneficial for potential applications such as thermoelectric generators. Here we report the thermal and electronic properties of thin-film Heusler alloys based on Fe2V0.8W0.2Al prepared by magnetron sputtering. Density functional theory calculations suggest that the thin films are metastable states, and measurements of the power factor—the ratio of the Seebeck coefficient squared divided by the electrical resistivity—suggest a high intrinsic figure of merit for these thin films. This may arise from a large differential density of states at the Fermi level and a Weyl-like electron dispersion close to the Fermi level, which indicates a high mobility of charge carriers owing to linear crossing in the electronic bands. A high intrinsic thermoelectric figure of merit is found for a metastable thin-film Fe2V0.8W0.2Al Heusler alloy.

Pembrolizumab versus chemotherapy as second-line therapy for advanced esophageal cancer: Phase III KEYNOTE-181 study.

Abstract: 2Background: Patients with advanced esophageal cancer after first-line chemotherapy (chemo) have a poor prognosis and limited treatment options. We present results of the phase 3 KEYNOTE-181 study ...

Study of the rare decays of B s 0 and B 0 mesons into muon pairs using data collected during 2015 and 2016 with the ATLAS detector

Abstract: A study of the decays B0 s ! + and B0 ! + has been performed using 26 : 3 fb of 13TeV LHC proton-proton collision data collected with the ATLAS detector in 2015 and 2016. Since the detector resolut ...

Distribution and Prognostic Significance of Left Ventricular Global Longitudinal Strain in Asymptomatic Significant Aortic Stenosis: An Individual Participant Data Meta-Analysis

Abstract: OBJECTIVES In this individual participant data meta-analysis on left ventricular global longitudinal strain (LVGLS), our objective was to 1) describe its distribution; 2) identify the most predictive cutoff values; and 3) assess its impact on mortality in asymptomatic patients with significant aortic stenosis (AS) and preserved left ventricular ejection fraction (LVEF). BACKGROUND The evidence supporting the prognostic role of LVGLS in asymptomatic patients with AS has been obtained from several relatively small studies. METHODS A literature search was performed for studies published between 2005 and 2017 without language restriction according to the following criteria "aortic stenosis" AND "longitudinal strain." The corresponding authors of selected studies were contacted and invited to share their data that we computerized in a specific database. The primary endpoint was all-cause mortality. RESULTS Among the 10 studies included, 1,067 asymptomatic patients with significant AS and LVEF >50% were analyzed. The median of LVGLS was 16.2% (from 5.6% to 30.1%). There were 91 deaths reported during follow-up with median of 1.8 (0.9 to 2.8) years, resulting in a pooled crude mortality rate of 8.5%. The LVGLS performed well in the prediction of death (area under the curve 0.68). The best cutoff value identified was LVGLS of 14.7% (sensitivity, 60%; specificity, 70%). Using random effects model, the risk of death for patients with LVGLS 2.5 (hazard ratio 2.62; 95% confidence interval 1.66 to 4.13; p = 60% (p = 0.001). CONCLUSIONS This individual participant data meta-analysis demonstrates that in asymptomatic patients with significant AS and normal LVEF, impaired LVGLS is associated with reduced survival. These data emphasize the potential usefulness of LVGLS for risk stratification and management of these patients. (C) 2019 the American College of Cardiology Foundation. Published by Elsevier. All rights reserved.

Molecular heterogeneity in peripheral T-cell lymphoma, not otherwise specified revealed by comprehensive genetic profiling

Abstract: Peripheral T-cell lymphoma, not otherwise specified (PTCL, NOS) is a diagnosis of exclusion, being the most common entity in mature T-cell neoplasms, and its molecular pathogenesis remains significantly understudied. Here, combining whole-exome and targeted-capture sequencing, gene-expression profiling, and immunohistochemical analysis of tumor samples from 133 cases, we have delineated the entire landscape of somatic alterations, and discovered frequently affected driver pathways in PTCL, NOS, with and without a T-follicular helper (TFH) cell phenotype. In addition to previously reported mutational targets, we identified a number of novel recurrently altered genes, such as KMT2C, SETD1B, YTHDF2, and PDCD1. We integrated these genetic drivers using hierarchical clustering and identified a previously undescribed molecular subtype characterized by TP53 and/or CDKN2A mutations and deletions in non-TFH PTCL, NOS. This subtype exhibited different prognosis and unique genetic features associated with extensive chromosomal instability, which preferentially affected molecules involved in immune escape and transcriptional regulation, such as HLA-A/B and IKZF2. Taken together, our findings provide novel insights into the molecular pathogenesis of PTCL, NOS by highlighting their genetic heterogeneity. These results should help to devise a novel molecular classification of PTCLs and to exploit a new therapeutic strategy for this group of aggressive malignancies.

Conjugated Microporous Polymers with Tunable Electronic Structure for High-Performance Potassium-Ion Batteries.

Abstract: Conjugated microporous polymers (CMPs) with π-conjugated skeletons show great potential as energy storage materials due to their porous structure and tunable redox nature. However, CMPs and the structure-performance relationships have not been well explored for potassium-ion batteries (KIBs). Here, we report the structure-engineered CMP anodes with tunable electronic structures for high-performance KIBs. The results demonstrate that the electronic structure of the CMPs plays an important role in enhancing potassium storage capability, including the lowest unoccupied molecular orbital (LUMO) distribution, LUMO energy level, and band gap, which can be finely tuned by synthetic control. It was revealed that the poly(pyrene- co-benzothiadiazole) (PyBT) with optimized structure delivers a high reversible capacity of 428 mAh g-1 and shows an excellent cycling stability over 500 cycles. Our findings provide a fundamental understanding in the design of CMP anode materials for high-performance potassium-organic energy storage devices.

Electron reconstruction and identification in the ATLAS experiment using the 2015 and 2016 LHC proton-proton collision data at s=13 TeV

Abstract: Algorithms used for the reconstruction and identification of electrons in the central region of the ATLAS detector at the Large Hadron Collider (LHC) are presented in this paper; these algorithms a ...

Boosting electrochemical water splitting via ternary NiMoCo hybrid nanowire arrays

Abstract: Hydrogen production by electrochemical water splitting is a technology with the potential to meet the growing worldwide demand for sustainable and clean energy. However, the development of cost-effective catalysts to replace noble metals, such as platinum or ruthenium, remains crucial for large-scale hydrogen production. This study presents the synthesis of a transition non-noble metal-based ternary NiMoCo hybrid nanowire array as an efficient bifunctional electrocatalyst for overall water splitting in 1.0 M KOH electrolyte. The catalyst exhibits a low cell voltage of 1.56 V to achieve a water-splitting current density of 10 mA cm−2 together with long-term stability with only 5% of the initial current lost after 100 hours. X-ray absorption spectroscopy confirms that the addition of Co to the binary Ni–Mo system results in a highly mixed chemical binding state with modulated electronic structures. Density functional theory (DFT) calculations reveal that the Co atoms on the ternary alloy become catalytically active sites and facilitate adsorption of intermediates by ensuring preferable interactions between the reactants and the catalyst surface in comparison to the binary counterpart. This work provides a new direction along which to activate binary alloys to further enhance their catalytic abilities in overall water splitting.