University of Vienna

About: University of Vienna is a education organization based out in Vienna, Austria. It is known for research contribution in the topics: Population & Context (language use). The organization has 44686 authors who have published 95840 publications receiving 2907492 citations.

Molecular and biochemical classification of plant-derived food allergens.

Abstract: Molecular biology and biochemical techniques have significantly advanced the knowledge of allergens derived from plant foods. Surprisingly, many of the known plant food allergens are homologous to pathogenesis-related proteins (PRs), proteins that are induced by pathogens, wounding, or certain environmental stresses. PRs have been classified into 14 families. Examples of allergens homologous to PRs include chitinases (PR-3 family) from avocado, banana, and chestnut; antifungal proteins such as the thaumatin-like proteins (PR-5) from cherry and apple; proteins homologous to the major birch pollen allergen Bet v 1 (PR-10) from vegetables and fruits; and lipid transfer proteins (PR-14) from fruits and cereals. Allergens other than PR homologs can be allotted to other well-known protein families such as inhibitors of α-amylases and trypsin from cereal seeds, profilins from fruits and vegetables, seed storage proteins from nuts and mustard seeds, and proteases from fruits. As more clinical data and structural information on allergenic molecules becomes available, we may finally be able to answer what characteristics of a molecule are responsible for its allergenicity. (J Allergy Clin Immunol 2000;106:27-36.)

Helium diffusion in natural zircon: radiation damage, anisotropy, and the interpretation of zircon (U-TH)/He thermochronology

Abstract: Accurate thermochronologic interpretation of zircon (U-Th)/He dates requires a realistic and practically useful understanding of He diffusion kinetics in natural zircon, ideally across the range of variation that characterize typically dated specimens. Here we present a series of date and diffusion measurements that document the importance of alpha dose, which we interpret to be correlated with accumulated radiation damage, on He diffusivity. This effect is manifest in both date-effective uranium (eU) correlations among zircon grains from single hand samples and in diffusion experiments on pairs of crystallographically oriented slabs of zircon with alpha doses ranging from ∼1016 to 1019 α/g. We interpret these results as due to two contrasting effects of radiation damage in zircon, both of which have much larger effects on He diffusivity and thermal sensitivity of the zircon (U-Th)/He system than crystallographic anisotropy. Between 1.2 × 1016 α/g and 1.4 × 1018 α/g, the frequency factor, D0, measured in the c-axis parallel direction decreases by roughly four orders of magnitude, causing He diffusivity to decrease dramatically (for example by three orders of magnitude at temperatures between 140 and 220 °C). Above ∼2 × 1018 α/g, however, activation energy decreases by a factor of roughly two, and diffusivity increases by about nine orders of magnitude by 8.2 × 1018 α/g. We interpret these two trends with a model that describes the increasing tortuosity of diffusion pathways with progressive damage accumulation, which in turn causes decreases in He diffusivity at low damage. At high damage, increasing diffusivity results from damage zone interconnection and consequential shrinking of the effective diffusion domain size. Our model predicts that the bulk zircon (U-Th)/He closure temperature (Tc) increases from about 140 to 220 °C between alpha doses of 1016 to 1018 α/g, followed by a dramatic decrease in Tc above this dose. Linking this parameterization to one describing damage annealing as a function of time and temperature, we can model the coevolution of damage, He diffusivity, and (U-Th)/He date of zircon. This model generates positive or negative date-eU correlations depending on the extent of damage in each grain and the date-eU sample9s time-temperature history.

Molecfit: A general tool for telluric absorption correction - I. Method and application to ESO instruments

Abstract: Context. The interaction of the light from astronomical objects with the constituents of the Earth’s atmosphere leads to the formation of telluric absorption lines in ground-based collected spectra. Correcting for these lines, mostly a ecting the red and infrared region of the spectrum, usually relies on observations of specific stars obtained close in time and airmass to the science targets, therefore using precious observing time. Aims. We present molecfit, a tool to correct for telluric absorption lines based on synthetic modelling of the Earth’s atmospheric transmission. Molecfit is versatile and can be used with data obtained with various ground-based telescopes and instruments. Methods. Molecfit combines a publicly available radiative transfer code, a molecular line database, atmospheric profiles, and various kernels to model the instrument line spread function. The atmospheric profiles are created by merging a standard atmospheric profile representative of a given observatory’s climate, of local meteorological data, and of dynamically retrieved altitude profiles for temperature, pressure, and humidity. We discuss the various ingredients of the method, its applicability, and its limitations. We also show examples of telluric line correction on spectra obtained with a suite of ESO Very Large Telescope (VLT) instruments. Results. Compared to previous similar tools, molecfit takes the best results for temperature, pressure, and humidity in the atmosphere above the observatory into account. As a result, the standard deviation of the residuals after correction of unsaturated telluric lines is frequently better than 2% of the continuum. Conclusions. Molecfit is able to accurately model and correct for telluric lines over a broad range of wavelengths and spectral resolutions. The accuracy reached is comparable to or better than the typical accuracy achieved using a telluric standard star observation. The availability of such a general tool for telluric absorption correction may improve future observational and analysing strategies, as well as empower users of archival data.

Osteoclasts are essential for TNF-α–mediated joint destruction

Abstract: The detailed cellular and molecular mechanisms leading to joint destruction in rheumatoid arthritis, a disease driven by proinflammatory cytokines, are still unknown. To address the question of whether osteoclasts play a pivotal role in this process, transgenic mice that express human TNF (hTNFtg) and that develop a severe and destructive arthritis were crossed with osteopetrotic, c-fos-deficient mice (c-fos(-/-)) completely lacking osteoclasts. The resulting mutant mice (c-fos(-/-)hTNFtg) developed a TNF-dependent arthritis in the absence of osteoclasts. All clinical features of arthritis, such as paw swelling and reduction of grip strength, progressed equally in both groups. Histological evaluation of joint sections revealed no difference in the extent of synovial inflammation, its cellular composition (except for the lack of osteoclasts), and the expression of matrix metalloprotein-ase-3 (MMP-3) and MMP-13. In addition, cartilage damage, proteoglycan loss, and MMP-3, -9, and -13 expression in chondrocytes were similar in hTNFtg and c-fos(-/-)hTNFtg mice. However, despite the presence of severe inflammatory changes, c-fos(-/-)hTNFtg mice were fully protected against bone destruction. These data reveal that TNF-dependent bone erosion is mediated by osteoclasts and that the absence of osteoclasts alters TNF-mediated arthritis from a destructive to a nondestructive arthritis. Therefore, in addition to the use of anti-inflammatory therapies, osteoclast inhibition could be beneficial for the treatment of rheumatoid arthritis.

Hybrid functionals applied to rare-earth oxides: The example of ceria

Abstract: We report periodic density functional theory (DFT) calculations for ${\mathrm{CeO}}_{2}$ and ${\mathrm{Ce}}_{2}{\mathrm{O}}_{3}$ using the Perdew-Burke-Ernzerhof (PBE0) and Heyd-Scuseria-Ernzerhof (HSE) hybrid functionals that include nonlocal Fock exchange. We study structural, electronic, and magnetic ground state properties. Hybrid functionals correctly predict ${\mathrm{Ce}}_{2}{\mathrm{O}}_{3}$ to be an insulator as opposed to the ferromagnetic metal predicted by the local spin density (LDA) and generalized gradient (GGA) approximations. The equilibrium volumes of both structures are in very good agreement with experiments, improving upon the description of the LDA and GGA. The calculated ${\mathrm{CeO}}_{2}$ (O $2p$--Ce $5d$) and ${\mathrm{Ce}}_{2}{\mathrm{O}}_{3}$ $(\mathrm{Ce}\phantom{\rule{0.3em}{0ex}}4f\text{\ensuremath{-}}5d4f)$ band gaps are larger by up to 45% (PBE0) and 15% (HSE) than found in experiments. Furthermore, we calculate atomization energies, heats of formation, and the reduction energy of $2{\mathrm{CeO}}_{2}\ensuremath{\rightarrow}{\mathrm{Ce}}_{2}{\mathrm{O}}_{3}+(1∕2){\mathrm{O}}_{2}$. The latter is underestimated by $\ensuremath{\sim}0.4--0.9\phantom{\rule{0.3em}{0ex}}\mathrm{eV}$ with respect to available experimental data at room temperature. We compare our results with the more traditional DFT+$U$ (LDA$+U$ and PBE$+U$) approach and discuss the role played by the Hubbard $U$ parameter.