University of Warsaw

About: University of Warsaw is a education organization based out in Warsaw, Poland. It is known for research contribution in the topics: Population & Large Hadron Collider. The organization has 20832 authors who have published 56617 publications receiving 1185084 citations. The organization is also known as: Uniwersytet Warszawski & Warsaw University.

DESIRE: Modelling Multi-Agent Systems in a Compositional Formal Framework

Abstract: This paper discusses an example of the application of a high-level modelling framework which supports both the specification and implementation of a system's conceptual design. This framework, DESIRE (framework for DEsign and Specification of Interacting REasoning components), explicitly models the knowledge, interaction, and coordination of complex tasks and reasoning capabilities in agent systems. For the application domain addressed in this paper, an operational multi-agent system which manages an electricity transportation network for a Spanish electricity utility, a comprehensible specification is presented.

Gauge field theories

Abstract: Preface Introduction 1. Classical fields, symmetries and their breaking 2. Path integral formulation of quantum field theory 3. Feynman rules for Yang-Mills theories 4. Introduction to the theory of renormalization 5. Quantum electrodynamics 6. Renormalization group 7. Scale invariance and operator product expansion 8. Quantum chromodynamics 9. Chiral symmetry, spontaneous symmetry breaking 10. Spontaneous and explicit global symmetry breaking 11. Higgs mechanisms in gauge theories 12. Standard electroweak theory 13. Chiral anomalies 14. Effective lagrangians 15. Introduction to supersymmetry Appendices.

Meta-analysis of multidecadal biodiversity trends in Europe

Abstract: Local biodiversity trends over time are likely to be decoupled from global trends, as local processes may compensate or counteract global change. We analyze 161 long-term biological time series (15–91 years) collected across Europe, using a comprehensive dataset comprising ~6,200 marine, freshwater and terrestrial taxa. We test whether (i) local long-term biodiversity trends are consistent among biogeoregions, realms and taxonomic groups, and (ii) changes in biodiversity correlate with regional climate and local conditions. Our results reveal that local trends of abundance, richness and diversity differ among biogeoregions, realms and taxonomic groups, demonstrating that biodiversity changes at local scale are often complex and cannot be easily generalized. However, we find increases in richness and abundance with increasing temperature and naturalness as well as a clear spatial pattern in changes in community composition (i.e. temporal taxonomic turnover) in most biogeoregions of Northern and Eastern Europe.

Protein modeling and structure prediction with a reduced representation.

Abstract: Protein modeling could be done on various levels of structural details, from simplified lattice or continuous representations, through high resolution reduced models, employing the united atom representation, to all-atom models of the molecular mechanics. Here I describe a new high resolution reduced model, its force field and applications in the structural proteomics. The model uses a lattice representation with 800 possible orientations of the virtual alpha carbon-alpha carbon bonds. The sampling scheme of the conformational space employs the Replica Exchange Monte Carlo method. Knowledge-based potentials of the force field include: generic protein-like conformational biases, statistical potentials for the short-range conformational propensities, a model of the main chain hydrogen bonds and context-dependent statistical potentials describing the side group interactions. The model is more accurate than the previously designed lattice models and in many applications it is complementary and competitive in respect to the all-atom techniques. The test applications include: the ab initio structure prediction, multitemplate comparative modeling and structure prediction based on sparse experimental data. Especially, the new approach to comparative modeling could be a valuable tool of the structural proteomics. It is shown that the new approach goes beyond the range of applicability of the traditional methods of the protein comparative modeling.