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Showing papers by "University of Western Australia published in 2008"



Journal ArticleDOI
02 May 2008-Cell
TL;DR: Deep sequencing of smRNAs revealed a direct relationship between the location of sm RNAs and DNA methylation, perturbation of smRNA biogenesis upon loss of CpG DNA methylisation, and a tendency for smRN as to direct strand-specific DNA methylations in regions of RNA-DNA homology.

2,349 citations


Journal ArticleDOI
TL;DR: Halophytes, plants that survive to reproduce in environments where the salt concentration is around 200 mm NaCl or more, constitute about 1% of the world's flora and research should be concentrated on a number of 'model' species that are representative of the various mechanisms that might be involved in tolerance.
Abstract: Halophytes, plants that survive to reproduce in environments where the salt concentration is around 200 mM NaCl or more, constitute about 1% of the worlds flora. Some halophytes show optimal growth in saline conditions; others grow optimally in the absence of salt. However, the tolerance of all halophytes to salinity relies on controlled uptake and compartmentalization of Na+, K+ and Cl- and the synthesis of organic compatible solutes, even where salt glands are operative. Although there is evidence that different species may utilize different transporters in their accumulation of Na+, in general little is known of the proteins and regulatory networks involved. Consequently, it is not yet possible to assign molecular mechanisms to apparent differences in rates of Na+ and Cl- uptake, in root-to-shoot transport (xylem loading and retrieval), or in net selectivity for K+ over Na+. At the cellular level, H+-ATPases in the plasma membrane and tonoplast, as well as the tonoplast H+-PPiase, provide the transmembrane proton motive force used by various secondary transporters. The widespread occurrence, taxonomically, of halophytes and the general paucity of information on the molecular regulation of tolerance mechanisms persuade us that research should be concentrated on a number of model species that are representative of the various mechanisms that might be involved in tolerance.

2,127 citations


Journal ArticleDOI
TL;DR: This paper outlines the inconsistencies of existing metrics in the context of multi- object miss-distances for performance evaluation, and proposes a new mathematically and intuitively consistent metric that addresses the drawbacks of current multi-object performance evaluation metrics.
Abstract: The concept of a miss-distance, or error, between a reference quantity and its estimated/controlled value, plays a fundamental role in any filtering/control problem. Yet there is no satisfactory notion of a miss-distance in the well-established field of multi-object filtering. In this paper, we outline the inconsistencies of existing metrics in the context of multi-object miss-distances for performance evaluation. We then propose a new mathematically and intuitively consistent metric that addresses the drawbacks of current multi-object performance evaluation metrics.

1,765 citations


Journal ArticleDOI
TL;DR: The use of this virtually ideal herbicide is now being threatened by the evolution of glyphosate-resistant weeds, and adoption of resistance management practices will be required to maintain the benefits of glyphosate technologies for future generations.
Abstract: Since its commercial introduction in 1974, glyphosate [N-(phosphonomethyl)glycine] has become the dominant herbicide worldwide. There are several reasons for its success. Glyphosate is a highly effective broad-spectrum herbicide, yet it is very toxicologically and environmentally safe. Glyphosate translocates well, and its action is slow enough to take advantage of this. Glyphosate is the only herbicide that targets 5-enolpyruvyl-shikimate-3-phosphate synthase (EPSPS), so there are no competing herbicide analogs or classes. Since glyphosate became a generic compound, its cost has dropped dramatically. Perhaps the most important aspect of the success of glyphosate has been the introduction of transgenic, glyphosate-resistant crops in 1996. Almost 90% of all transgenic crops grown worldwide are glyphosate resistant, and the adoption of these crops is increasing at a steady pace. Glyphosate/glyphosate-resistant crop weed management offers significant environmental and other benefits over the technologies that it replaces. The use of this virtually ideal herbicide is now being threatened by the evolution of glyphosate-resistant weeds. Adoption of resistance management practices will be required to maintain the benefits of glyphosate technologies for future generations. Copyright © 2008 Society of Chemical Industry

1,331 citations


Journal ArticleDOI
TL;DR: This work provides an explanation for the distribution of mycorrhizal species on less P-impoverished soils, and for why, globally, cluster-bearing species dominate on severely P-immoverished, ancient soils, where P sensitivity is relatively common.
Abstract: Nitrogen (N) tends to limit plant productivity on young soils; phosphorus (P) becomes increasingly limiting in ancient soils because it gradually disappears through leaching and erosion. Plant traits that are regarded as adaptations to N- and P-limited conditions include mycorrhizas and cluster roots. Mycorrhizas 'scavenge' P from solution or 'mine' insoluble organic N. Cluster roots function in severely P-impoverished landscapes, 'mining' P fixed as insoluble inorganic phosphates. The 'scavenging' and 'mining' strategies of mycorrhizal species without and non-mycorrhizal species with cluster roots, respectively, allow functioning on soils that differ markedly in P availability. Based on recent advances in our understanding of these contrasting strategies of nutrient acquisition, we provide an explanation for the distribution of mycorrhizal species on less P-impoverished soils, and for why, globally, cluster-bearing species dominate on severely P-impoverished, ancient soils, where P sensitivity is relatively common.

1,094 citations


Journal ArticleDOI
TL;DR: It is demonstrated that HIF1alpha, the direct effector of hypoxia, partly through increases in SDF1 alpha, induces recruitment of bone marrow-derived CD45+ myeloid cells containing Tie2+, VEGFR1+, CD11b+, and F4/80+ subpopulations, as well as endothelial and pericyte progenitor cells to promote neovascularization in glioblastoma.

1,083 citations


Journal ArticleDOI
TL;DR: A better understanding of molecular factors involved in this complex tripartite interaction is expected to enhance not only the rapid identification of effective strains and their applications but also indicate the potentials for improvement of natural strains of Trichoderma.
Abstract: Biological control involves the use of beneficial organisms, their genes, and/or products, such as metabolites, that reduce the negative effects of plant pathogens and promote positive responses by the plant. Disease suppression, as mediated by biocontrol agents, is the consequence of the interactions between the plant, pathogens, and the microbial community. Antagonists belonging to the genus Trichoderma are among the most commonly isolated soil fungi. Due to their ability to protect plants and contain pathogen populations under different soil conditions, these fungi have been widely studied and commercially marketed as biopesticides, biofertilizers and soil amendments. Trichoderma spp. also produce numerous biologically active compounds, including cell wall degrading enzymes, and secondary metabolites. Studies of the three-way relationship established with Trichoderma, the plant and the pathogen are aimed at unravelling the mechanisms involved in partner recognition and the cross-talk used to maintain the beneficial association between the fungal antagonist and the plant. Several strategies have been used to identify the molecular factors involved in this complex tripartite interaction including genomics, proteomics and, more recently, metabolomics, in order to enhance our understanding. This review presents recent advances and findings regarding the biocontrol-resulting events that take place during the Trichoderma –plant–pathogen interaction. We focus our attention on the biological aspects of this topic, highlighting the novel findings concerning the role of Trichoderma in disease suppression. A better understanding of these factors is expected to enhance not only the rapid identification of effective strains and their applications but also indicate the potentials for improvement of natural strains of Trichoderma .

1,079 citations


Journal ArticleDOI
TL;DR: It is shown that membranes incorporating carbon nanotubes can, in principle, achieve a high degree of desalination at flow rates far in excess of existing membranes.
Abstract: The transport of water and ions through membranes formed from carbon nanotubes ranging in diameter from 6 to 11 A is studied using molecular dynamics simulations under hydrostatic pressure and equilibrium conditions. Membranes incorporating carbon nanotubes are found to be promising candidates for water desalination using reverse osmosis, and the size and uniformity of tubes that is required to achieve a desired salt rejection is determined. By calculating the potential of mean force for ion and water translocation, we show that ions face a large energy barrier and will not pass through the narrower tubes studied ((5,5) and (6,6) “armchair” type tubes) but can pass through the wider (7,7) and (8,8) nanotubes. Water, however, faces no such impediment due to the formation of stable hydrogen bonds and crosses all of the tubes studied at very large rates. By measuring this conduction rate under a hydrostatic pressure difference, we show that membranes incorporating carbon nanotubes can, in principle, achieve ...

900 citations


Journal ArticleDOI
TL;DR: In the absence of a specific routine diagnostic test for P. knowlesi malaria, patients who reside in or have traveled to Southeast Asia and who have received a "P. malariae" hyperparasitemia diagnosis by microscopy receive intensive management as appropriate for severe falciparum malaria.
Abstract: Background. Until recently, Plasmodium knowlesi malaria in humans was misdiagnosed as Plasmodium malariae malaria. The objectives of the present study were to determine the geographic distribution of P. knowlesi malaria in the human population in Malaysia and to investigate 4 suspected fatal cases. Methods. Sensitive and specific nested polymerase chain reaction was used to identify all Plasmodium species present in (1) blood samples obtained from 960 patients with malaria who were hospitalized in Sarawak, Malaysian Borneo, during 2001-2006; (2) 54 P. malariae archival blood films from 15 districts in Sabah, Malaysian Borneo (during 2003-2005), and 4 districts in Pahang, Peninsular Malaysia (during 2004-2005); and (3) 4 patients whose suspected cause of death was P. knowlesi malaria. For the 4 latter cases, available clinical and laboratory data were reviewed. Results. P. knowlesi DNA was detected in 266 (27.7%) of 960 of the samples from Sarawak hospitals, 41 (83.7%) of 49 from Sabah, and all 5 from Pahang. Only P. knowlesi DNA was detected in archival blood films from the 4 patients who died. All were hyperparasitemic and developed marked hepatorenal dysfunction. Conclusions. Human infection with P. knowlesi, commonly misidentified as the more benign P. malariae, are widely distributed across Malaysian Borneo and extend to Peninsular Malaysia. Because P. knowlesi replicates every 24 h, rapid diagnosis and prompt effective treatment are essential. In the absence of a specific routine diagnostic test for P. knowlesi malaria, we recommend that patients who reside in or have traveled to Southeast Asia and who have received a "P. malariae" hyperparasitemia diagnosis by microscopy receive intensive management as appropriate for severe falciparum malaria.

875 citations


Journal ArticleDOI
TL;DR: Large well-designed randomised controlled trials with clear descriptions of patients are needed to improve the present recommendations on the treatment of these common syndromes.
Abstract: There is poor agreement on definitions of different phenotypes of preschool wheezing disorders. The present Task Force proposes to use the terms episodic (viral) wheeze to describe children who wheeze intermittently and are well between episodes, and multiple-trigger wheeze for children who wheeze both during and outside discrete episodes. Investigations are only needed when in doubt about the diagnosis. Based on the limited evidence available, inhaled short-acting beta(2)-agonists by metered-dose inhaler/spacer combination are recommended for symptomatic relief. Educating parents regarding causative factors and treatment is useful. Exposure to tobacco smoke should be avoided; allergen avoidance may be considered when sensitisation has been established. Maintenance treatment with inhaled corticosteroids is recommended for multiple-trigger wheeze; benefits are often small. Montelukast is recommended for the treatment of episodic (viral) wheeze and can be started when symptoms of a viral cold develop. Given the large overlap in phenotypes, and the fact that patients can move from one phenotype to another, inhaled corticosteroids and montelukast may be considered on a trial basis in almost any preschool child with recurrent wheeze, but should be discontinued if there is no clear clinical benefit. Large well-designed randomised controlled trials with clear descriptions of patients are needed to improve the present recommendations on the treatment of these common syndromes.

Journal ArticleDOI
TL;DR: There is strong evidence that poor oral hygiene, a history of periodontitis and cigarette smoking, are risk indicators for peri-implant disease.
Abstract: Background: Peri-implant diseases include peri-implant mucositis, describing an inflammatory lesion of the peri-implant mucosa, and peri-implantitis, which also includes loss of supporting bone. Methods: A literature search of the Medline database (Ovid), up to 21 January 2008 was carried out using a systematic approach, in order to review the evidence for diagnosis and the risk indicators for peri-implant diseases. Results: Experimental and clinical studies have identified various diagnostic criteria including probing parameters, radiographic assessment and peri-implant crevicular fluid and saliva analyses. Cross-sectional analyses have investigated potential risk indicators for peri-implant disease including poor oral hygiene, smoking, history of periodontitis, diabetes, genetic traits, alcohol consumption and implant surface. There is evidence that probing using a light force (0.25 N) does not damage the peri-implant tissues and that bleeding on probing (BOP) indicates presence of inflammation in the peri-implant mucosa. The probing depth, the presence of BOP, and suppuration should be assessed regularly for the diagnosis of peri-implant diseases. Radiographs are required to evaluate supporting bone levels around implants. The review identified strong evidence that poor oral hygiene, a history of periodontitis and cigarette smoking, are risk indicators for peri-implant disease. Future prospective studies are required to confirm these factors as true risk factors.

Journal ArticleDOI
TL;DR: It is argued that most researchers are unaware of the serious limitations of classic methods and are unfamiliar with modern alternatives, and a range of modern robust and rank-based significance tests suitable for analyzing a wide range of designs is introduced.
Abstract: Summary Most researchers analyze data using outdated methods.Classic parametric tests, effect sizes, and conÞdence inter-vals around effect size statistics are not robust to violationsof their assumptions, and violations seem to occur fre-quently when real data are analyzed. Researchers relyingon statistical tests (e.g. LeveneOs test) to identify assump-tion violations may frequently fail to detect deviations fromnormality and homoscedasticity that are large enough toseriously affect the Type I error rate and power of classicparametric tests. We recommend that researchers bypassclassic parametric statistics in favor of modern robustmethods. Modern methods perform well in a much largerrange of situations than do classic techniques. The use ofmodern methods will result in researchers Þnding morestatistically signiÞcant results when real effects exist in thepopulation. Using modern methods will also reduce thenumber of Type I errors made by researchers and result inmore accurate conÞdence intervals around robust effectsize statistics. A range of accessible texts about modernmethods is available (e.g., Wilcox, 2001, 2003), as well asa wide range of software to perform modern analyses.Given the wealth of resources available, researchers have atremendous opportunity to engage in modern robust statis-tical methods.

Journal ArticleDOI
TL;DR: Several recent papers are discussed that cover the evolutionary history and molecular mode of action of Pentatricopeptide repeat proteins, and propose hypotheses for their physiological roles that could explain why PPR proteins are so numerous in terrestrial plants.

Journal ArticleDOI
01 Aug 2008-Sleep
TL;DR: In this article, the authors investigated whether sleep apnea is an independent risk factor for all-cause mortality in a sample of Busselton Health Study participants recruited in 1990 to determine the community prevalence of OSA.
Abstract: OBSTRUCTIVE SLEEP APNEA (OSA) IS CHARACTERIZED BY REPETITIVE UPPER AIRWAY CLOSURE DURING SLEEP RESULTING IN REPEATED REVERSIBLE blood oxygen desaturation and fragmented sleep. OSA has been associated with a range of pathophysiological changes that impair cardiovascular function,1 including increased blood inflammatory markers and repeated rises in blood pressure during sleep. There is increasing evidence that OSA promotes the development of hypertension, stroke, myocardial infarction and premature death.2 However, because OSA is strongly associated with obesity and thus also with many other obesity-related diseases, it has been difficult to produce clear evidence that these associations are caused by sleep apnea and not other established causes. Better understanding of the association between OSA and mortality risk has major public health importance.3 A number of studies have shown that approximately 25% of middle-aged men and 9% of middle-aged women stop breathing during sleep ≥ 5 times per hour.4–6 Given that the major modifiable risk factor for OSA is obesity it is likely that the prevalence of OSA is increasing.7 Thus, as a very common condition, even modest effects of sleep apnea on morbidity and mortality would be important.3 Previous reports that have independently linked OSA to mortality have all been based on patients referred to sleep clinics.8–14 Two of the most recent and frequently cited of these studies indicated that severe sleep apnea, compared to no sleep apnea, was an independent risk factor for cardiovascular mortality (odds ratio 2.87, 95% CL 1.17, 7.51)12; the other study found that sleep apnea, compared to no sleep apnea, was an independent risk factor for a composite endpoint of all-cause mortality or incident stroke (hazard ratio 1.97, 95% CL 1.12, 3.48).11 However, as these were not community recruited participants they might have been subject to a clinical referral bias that might have given a false impression of the size or significance of the true association with mortality in the community. The choice of composite or restricted mortality endpoints also failed to rule out that sleep apnea might have had some unexpected beneficial effect that reduced mortality from other causes. Data from a community-based cohort, free from clinical referral bias, would thus be useful to determine whether sleep apnea is an independent risk factor for all-cause mortality in middle-aged people. The community of Busselton in Western Australia has been the subject of cross-sectional and follow-up health surveys since 1966.15–17 We aimed to investigate whether sleep apnea is an independent risk factor for all-cause mortality in a sample of Busselton Health Study participants recruited in 1990 to determine the community prevalence of sleep apnea.4

Journal ArticleDOI
TL;DR: In this paper, consensus case definitions for paradoxical tuberculosis-associated IRIS, ART-associated tuberculosis, and unmasking tuberculosis associated IRIS were derived, which can be used by clinicians and researchers in a variety of settings to promote standardisation and comparability of data.
Abstract: The immune reconstitution inflammatory syndrome (IRIS) has emerged as an important early complication of antiretroviral therapy (ART) in resource-limited settings, especially in patients with tuberculosis. However, there are no consensus case definitions for IRIS or tuberculosis-associated IRIS. Moreover, previously proposed case definitions are not readily applicable in settings where laboratory resources are limited. As a result, existing studies on tuberculosis-associated IRIS have used a variety of non-standardised general case definitions. To rectify this problem, around 100 researchers, including microbiologists, immunologists, clinicians, epidemiologists, clinical trialists, and public-health specialists from 16 countries met in Kampala, Uganda, in November, 2006. At this meeting, consensus case definitions for paradoxical tuberculosis-associated IRIS, ART-associated tuberculosis, and unmasking tuberculosis-associated IRIS were derived, which can be used in high-income and resource-limited settings. It is envisaged that these definitions could be used by clinicians and researchers in a variety of settings to promote standardisation and comparability of data.


Journal ArticleDOI
TL;DR: In this paper, a detailed discussion is given of molecular electrostatic potentials for a large number of small symmetric, cyclic molecules that crystallize in space groupsP41212 or P43212, with a focus on the qualitative insight that can be obtained and the ways in which this complements the intermolecular electrostatic energies recently reported for some of these materials.
Abstract: Ab initio electrostatic potentials for molecules can readily be mapped onto their Hirshfeld surfaces and displayed within a crystal packing diagram In this manner the close molecular contacts in the crystal can be rationalized and discussed in terms of the electrostatic complementarity of touching surface patches in adjacent molecules By way of example a detailed discussion is given of molecular electrostatic potentials for a large number of small, symmetric, cyclic molecules that crystallize in space groupsP41212 or P43212, with a focus on the qualitative insight that can be obtained and the ways in which this complements the intermolecular electrostatic energies recently reported for some of these materials

Journal ArticleDOI
05 Dec 2008-Science
TL;DR: Cultivation of salt-tolerant crops can help address the threats of irreversible global salinization of fresh water and soils.
Abstract: Cultivation of salt-tolerant crops can help address the threats of irreversible global salinization of fresh water and soils.

Journal ArticleDOI
TL;DR: This review highlights the opportunities that development of arid conditions provides for rapid and diverse evolutionary radiations, and re-enforces the emerging view that Pleistocene environmental change can have diverse impacts on genetic structure and diversity in different biomes.
Abstract: The integration of phylogenetics, phylogeography and palaeoenvironmental studies is providing major insights into the historical forces that have shaped the Earth's biomes. Yet our present view is biased towards arctic and temperate/tropical forest regions, with very little focus on the extensive arid regions of the planet. The Australian arid zone is one of the largest desert landform systems in the world, with a unique, diverse and relatively well-studied biota. With foci on palaeoenvironmental and molecular data, we here review what is known about the assembly and maintenance of this biome in the context of its physical history, and in comparison with other mesic biomes. Aridification of Australia began in the Mid-Miocene, around 15 million years, but fully arid landforms in central Australia appeared much later, around 1-4 million years. Dated molecular phylogenies of diverse taxa show the deepest divergences of arid-adapted taxa from the Mid-Miocene, consistent with the onset of desiccation. There is evidence of arid-adapted taxa evolving from mesic-adapted ancestors, and also of speciation within the arid zone. There is no evidence for an increase in speciation rate during the Pleistocene, and most arid-zone species lineages date to the Pliocene or earlier. The last 0.8 million years have seen major fluctuations of the arid zone, with large areas covered by mobile sand dunes during glacial maxima. Some large, vagile taxa show patterns of recent expansion and migration throughout the arid zone, in parallel with the ice sheet-imposed range shifts in Northern Hemisphere taxa. Yet other taxa show high lineage diversity and strong phylogeographical structure, indicating persistence in multiple localised refugia over several glacial maxima. Similar to the Northern Hemisphere, Pleistocene range shifts have produced suture zones, creating the opportunity for diversification and speciation through hybridisation, polyploidy and parthenogenesis. This review highlights the opportunities that development of arid conditions provides for rapid and diverse evolutionary radiations, and re-enforces the emerging view that Pleistocene environmental change can have diverse impacts on genetic structure and diversity in different biomes. There is a clear need for more detailed and targeted phylogeographical studies of Australia's arid biota and we suggest a framework and a set of a priori hypotheses by which to proceed.

Journal ArticleDOI
TL;DR: Either thoracic epidural analgesia with LA plus opioid or continuous paravertebral block with LA can be recommended and intrathecal opioid or intercostal nerve block are recommended despite insufficient duration of analgesia, which requires the use of supplementary systemic analgesia.
Abstract: BACKGROUND:Thoracotomy induces severe postoperative pain and impairment of pulmonary function, and therefore regional analgesia has been intensively studied in this procedure. Thoracic epidural analgesia is commonly considered the “gold standard” in this setting; however, evaluation of the evidence is needed to assess the comparative benefits of alternative techniques, guide clinical practice and identify areas requiring further research. METHODS:In this systematic review of randomized trials we evaluated thoracic epidural, paravertebral, intrathecal, intercostal, and interpleural analgesic techniques, compared to each other and to systemic opioid analgesia, in adult thoracotomy. Postoperative pain, analgesic use, and complications were analyzed. RESULTS:Continuous paravertebral block was as effective as thoracic epidural analgesia with local anesthetic (LA) but was associated with a reduced incidence of hypotension. Paravertebral block reduced the incidence of pulmonary complications compared with systemic analgesia, whereas thoracic epidural analgesia did not. Thoracic epidural analgesia was superior to intrathecal and intercostal techniques, although these were superior to systemic analgesia; interpleural analgesia was inadequate. CONCLUSIONS:Either thoracic epidural analgesia with LA plus opioid or continuous paravertebral block with LA can be recommended. Where these techniques are not possible, or are contraindicated, intrathecal opioid or intercostal nerve block are recommended despite insufficient duration of analgesia, which requires the use of supplementary systemic analgesia. Quantitative meta-analyses were limited by heterogeneity in study design, and subject numbers were small. Further well designed studies are required to investigate the optimum components of the epidural solution and to rigorously evaluate the risks/benefits of continuous infusion paravertebral and intercostal techniques compared with thoracic epidural analgesia. (Anesth Analg 2008;107:1026‐40)

Journal ArticleDOI
TL;DR: It is recommended recognizing that some genetic change due to harvest is inevitable and management plans should be developed by applying basic genetic principles combined with molecular genetic monitoring to minimize harmful genetic change.
Abstract: Human harvest of animals in the wild occurs in terrestrial and aquatic habitats throughout the world and is often intense. Harvest has the potential to cause three types of genetic change: alteration of population subdivision, loss of genetic variation, and selective genetic changes. To sustain the productivity of harvested populations, it is crucial to incorporate genetic considerations into management. Nevertheless, it is not necessary to disentangle genetic and environmental causes of phenotypic changes to develop management plans for individual species. We recommend recognizing that some genetic change due to harvest is inevitable. Management plans should be developed by applying basic genetic principles combined with molecular genetic monitoring to minimize harmful genetic change.

Posted Content
TL;DR: In this paper, the authors used logarithmic mean divisia index (LMDI) techniques to decompose changes in energy intensity in the period 1980-2003.
Abstract: China experienced a dramatic decline in energy intensity from the onset of economic reform in the late 1970s until 2000, but since then the rate of decline slowed and energy intensity actually increased in 2003. Most previous studies found that most of the decline was due to technological change, but disagreed on the role of structural change. To the best of our knowledge, no decomposition study has investigated the role of inter-fuel substitution in the decline in energy intensity or the causes of the rise in energy intensity since 2000. In this paper, we use logarithmic mean Divisia index (LMDI) techniques to decompose changes in energy intensity in the period 1980-2003. We find that: (1) technological change is confirmed as the dominant contributor to the decline in energy intensity; (2) structural change at the industry and sector (sub-industry) level actually increased energy intensity over the period of 1980-2003, although the structural change at the industry level was very different in the 1980s and in the post-1990 period; (3) structural change involving shifts of production between sub-sectors, however, decreased overall energy intensity; (4) the increase in energy intensity since 2000 is explained by negative technological progress; (5) inter-fuel substitution is found to contribute little to the changes in energy intensity.

Journal ArticleDOI
23 Oct 2008-Nature
TL;DR: The results eliminate the evidence for oxygenic photosynthesis ∼2.7 Gyr ago and exclude previous biomarker evidence for a long delay between the appearance of oxygen-producing cyanobacteria and the rise in atmospheric oxygen 2.45–2.32 billion years ago.
Abstract: The oldest widely accepted evidence for oxygenic photosynthesis on Earth comes from hydro-carbon biomarkers extracted from 2.7-billion-year-old shales in the Pilbara Craton of Australia, thought to be evidence of eukaryotes and photosynthetic cyanobacteria. This early date has caused controversy because of the long delay between this earliest appearance of oxygen-producing cyanobacteria and the 'great oxidation event' that caused the rise of atmospheric oxygen some 300 million years later. New work by Rasmussen et al. shows that the organic biomarkers are not of Archaean age and must have entered the rocks later, some time after about 2.2 billion years ago. The earliest unambiguous fossil evidence for eukaryotes and cyanobacteria thus reverts to 1.78–1.68 and 2.15 billion years, respectively. The oldest widely accepted evidence for oxygenic photosynthesis comes from hydrocarbon biomarkers extracted from 2.7-billion-year-old shales in the Pilbara Craton, Australia, thought to be evidence of eukaryotes and photosynthetic cyanobacteria. But evidence now shows that the organic biomarkers were not indigenous to the rocks containing them, and must have entered the rocks after ∼2.2 Gyr ago. The earliest unambiguous fossil evidence for eukaryotes and cyanobacteria thus reverts to 1.78–1.68 and 2.15 Gyr, respectively. The evolution of oxygenic photosynthesis had a profound impact on the Earth’s surface chemistry, leading to a sharp rise in atmospheric oxygen between 2.45 and 2.32 billion years (Gyr) ago1,2 and the onset of extreme ice ages3. The oldest widely accepted evidence for oxygenic photosynthesis has come from hydrocarbons extracted from ∼2.7-Gyr-old shales in the Pilbara Craton, Australia, which contain traces of biomarkers (molecular fossils) indicative of eukaryotes and suggestive of oxygen-producing cyanobacteria4,5,6,7. The soluble hydrocarbons were interpreted to be indigenous and syngenetic despite metamorphic alteration and extreme enrichment (10–20‰) of 13C relative to bulk sedimentary organic matter5,8. Here we present micrometre-scale, in situ 13C/12C measurements of pyrobitumen (thermally altered petroleum) and kerogen from these metamorphosed shales, including samples that originally yielded biomarkers. Our results show that both kerogen and pyrobitumen are strongly depleted in 13C, indicating that indigenous petroleum is 10–20‰ lighter than the extracted hydrocarbons5. These results are inconsistent with an indigenous origin for the biomarkers. Whatever their origin, the biomarkers must have entered the rock after peak metamorphism ∼2.2 Gyr ago9 and thus do not provide evidence for the existence of eukaryotes and cyanobacteria in the Archaean eon. The oldest fossil evidence for eukaryotes and cyanobacteria therefore reverts to 1.78–1.68 Gyr ago and ∼2.15 Gyr ago10,11, respectively. Our results eliminate the evidence for oxygenic photosynthesis ∼2.7 Gyr ago and exclude previous biomarker evidence for a long delay (∼300 million years) between the appearance of oxygen-producing cyanobacteria and the rise in atmospheric oxygen 2.45–2.32 Gyr ago1.

Journal ArticleDOI
TL;DR: The quantitative evidence to date for the relationship between safety and constrained physical activity has received mixed support, and the evidence is somewhat inconsistent, and this may be partly attributed to measurement limitations.

Journal ArticleDOI
15 May 2008-Nature
TL;DR: This is the first demonstration, to the authors' knowledge, of reduced tumour angiogenesis and improved immune therapeutic outcome on loss of a vascular gene function and establishes a previously unrecognized role of G-protein signalling in tumourAngiogenesis.
Abstract: The vasculature of solid tumours is morphologically aberrant and characterized by dilated and fragile vessels, intensive vessel sprouting and loss of hierarchical architecture. Constant vessel remodelling leads to spontaneous haemorrhages and increased interstitial fluid pressure in the tumour environment. Tumour-related angiogenesis supports tumour growth and is also a major obstacle for successful immune therapy as it prevents migration of immune effector cells into established tumour parenchyma. The molecular mechanisms for these angiogenic alterations are largely unknown. Here we identify regulator of G-protein signalling 5 (Rgs5) as a master gene responsible for the abnormal tumour vascular morphology in mice. Loss of Rgs5 results in pericyte maturation, vascular normalization and consequent marked reductions in tumour hypoxia and vessel leakiness. These vascular and intratumoral changes enhance influx of immune effector cells into tumour parenchyma and markedly prolong survival of tumour-bearing mice. This is the first demonstration, to our knowledge, of reduced tumour angiogenesis and improved immune therapeutic outcome on loss of a vascular gene function and establishes a previously unrecognized role of G-protein signalling in tumour angiogenesis.

Journal ArticleDOI
TL;DR: It is suggested that the visual system has the capacity to estimate numerosity and that it is an independent primary visual property, not reducible to others like spatial frequency or density of texture.

Journal ArticleDOI
TL;DR: Glyphosate-resistant weeds are a major risk for the continued success of glyphosate and transgenic glyphosate-resistant crops, however, lessons can be learnt and actions taken to achieve glyphosate sustainability.
Abstract: Glyphosate is the world's most important herbicide, with many uses that deliver effective and sustained control of a wide spectrum of unwanted (weedy) plant species. Until recently there were relatively few reports of weedy plant species evolving resistance to glyphosate. Since 1996, the advent and subsequent high adoption of transgenic glyphosate-resistant crops in the Americas has meant unprecedented and often exclusive use of glyphosate forweedcontroloververylarge areas.Consequently, in regionsoftheUSA wheretransgenic glyphosate- resistant crops dominate, there are now evolved glyphosate-resistant populations of the economically damaging weed species Ambrosia artemissifolia L., Ambrosia trifida L., Amaranthus palmeri SW atson,Amaranthus rudis JD Sauer, Amaranthus tuberculatus (Moq) JD Sauer and various Conyza and Lolium spp. Likewise, in areas of transgenic glyphosate-resistant crops in Argentina and Brazil, there are now evolved glyphosate-resistant populations ofSorghum halepense (L.) Pers andEuphorbia heterophylla L. respectively. As transgenic glyphosate- resistant crops will remain very popular with producers, it is anticipated that glyphosate-resistant biotypes of other prominent weed species will evolve over the next few years. Therefore, evolved glyphosate-resistant weeds are a major risk for the continued success of glyphosate and transgenic glyphosate-resistant crops. However, glyphosate-resistant weeds are not yet a problem in many parts of the world, and lessons can be learnt and actions taken to achieve glyphosate sustainability. A major lesson is that maintenance of diversity in weed management systems is crucial for glyphosate to be sustainable. Glyphosate is essential for present and future world food production, and action to secure its sustainability for future gene rations is ag lobal imperative.  2008 Society of Chemical Industry

Journal ArticleDOI
TL;DR: The WADLS has supported over 400 studies with over 250 journal publications and 35 graduate research degrees, and there have been unbiased contributions to medical knowledge and identifiable advances in population health arising from the research.
Abstract: Objectives: The report describes the strategic design, steps to full implementation and outcomes achieved by the Western Australian Data Linkage System (WADLS), instigated in 1995 to link up to 40 years of data from over 30 collections for an historical population of 3.7 million. Staged development has seen its expansion, initially from a linkage key to local health data sets, to encompass links to national and local health and welfare data sets, genealogical links and spatial references for mapping applications. Applications: The WADLS has supported over 400 studies with over 250 journal publications and 35 graduate research degrees. Applications have occurred in health services utilisation and outcomes, aetiologic research, disease surveillance and needs analysis, and in methodologic research. Benefits: Longitudinal studies have become cheaper and more complete; deletion of duplicate records and correction of data artifacts have enhanced the quality of information assets; data linkage has conserved patient privacy; community machinery necessary for organised responses to health and social problems has been exercised; and the commercial return on research infrastructure investment has exceeded 1000%. Most importantly, there have been unbiased contributions to medical knowledge and identifiable advances in population health arising from the