University of Wisconsin-Madison

About: University of Wisconsin-Madison is a education organization based out in Madison, Wisconsin, United States. It is known for research contribution in the topics: Population & Poison control. The organization has 108707 authors who have published 237594 publications receiving 11883575 citations.

Revision of achievement goal theory: Necessary and illuminating.

Abstract: C. Midgley et al. (2001) raised important questions about the effects of performance-approach goals. The present authors disagree with their characterization of the research findings and implications for theory. They discuss 3 reasons to revise goal theory: (a) the importance of separating approach from avoidance strivings, (b) the positive potential of performance-approach goals, and (c) identification of the ways performance-approach goals can combine with mastery goals to promote optimal motivation. The authors review theory and research to substantiate their claim that goal theory is in need of revision, and they endorse a multiple goal perspective. The revision of goal theory is underway and offers a more complex, but necessary, perspective on important issues of motivation, learning, and achievement. In tins response. the authors dispel interpretation of their critical review of research on performance-approach goals as support for a dichotomous perspective of achievement goal theory. Second, the authors challenge the suggestion that accepting recent research findings and adopting a multiple goals perspective constitutes a theoretical revision of the assumption that mastery goals are always good and performance goals are always bad (J. M. Harackiewicz. K. E. Barron, P. R. Pintrich, P. R. Elliot, & T. M. Thrash. 2002, p. 643). The authors make a distinction between developments that contribute to the explanatory power of the theory and value-laden interpretations of theory and research. The authors argue that phrasing the latter in terms of the former is misleading and that it masks the necessity for a critical discussion over the desired purposes in different types of achievement contexts.

An integrated biosphere model of land surface processes, terrestrial carbon balance, and vegetation dynamics

Abstract: Here we present a new terrestrial biosphere model (the Integrated Biosphere Simulator - IBIS) which demonstrates how land surface biophysics, terrestrial carbon fluxes, and global vegetation dynamics can be represented in a single, physically consistent modeling framework. In order to integrate a wide range of biophysical, physiological, and ecological processes, the model is designed around a hierarchical, modular structure and uses a common state description throughout. First, a coupled simulation of the surface water, energy, and carbon fluxes is performed on hourly timesteps and is integrated over the year to estimate the annual water and carbon balance. Next, the annual carbon balance is used to predict changes in the leaf area index and biomass for each of nine plant functional types, which compete for light and water using different ecological strategies. The resulting patterns of annual evapotranspiration, runoff, and net primary productivity are in good agreement with observations. In addition, the model simulates patterns of vegetation dynamics that qualitatively agree with features of the natural process of secondary succession. Comparison of the model's inferred near-equilibrium vegetation categories with a potential natural vegetation map shows a fair degree of agreement. This integrated modeling framework provides a means of simulating both rapid biophysical processes and long-term ecosystem dynamics that can be directly incorporated within atmospheric models.

Cloning the soil metagenome: a strategy for accessing the genetic and functional diversity of uncultured microorganisms.

Abstract: Recent progress in molecular microbial ecology has revealed that traditional culturing methods fail to represent the scope of microbial diversity in nature, since only a small proportion of viable microorganisms in a sample are recovered by culturing techniques. To develop methods to investigate the full extent of microbial diversity, we used a bacterial artificial chromosome (BAC) vector to construct libraries of genomic DNA isolated directly from soil (termed metagenomic libraries). To date, we have constructed two such libraries, which contain more than 1 Gbp of DNA. Phylogenetic analysis of 16S rRNA gene sequences recovered from one of the libraries indicates that the BAC libraries contain DNA from a wide diversity of microbial phyla, including sequences from diverse taxa such as the low-G1C, gram-positive Acidobacterium, Cytophagales, and Proteobacteria. Initial screening of the libraries in Escherichia coli identified several clones that express heterologous genes from the inserts, confirming that the BAC vector can be used to maintain, express, and analyze environmental DNA. The phenotypes expressed by these clones include antibacterial, lipase, amylase, nuclease, and hemolytic activities. Metagenomic libraries are a powerful tool for exploring soil microbial diversity, providing access to the genetic information of uncultured soil microorganisms. Such libraries will be the basis of new initiatives to conduct genomic studies that link phylogenetic and functional information about the microbiota of environments dominated by microorganisms that are refractory to cultivation. The biosphere is dominated by microorganisms (32), yet most microbes in nature have not been studied. Traditional methods for culturing microorganisms limit analysis to those that grow under laboratory conditions (14, 25). The recent surge of research in molecular microbial ecology provides compelling evidence for the existence of many novel types of microorganisms in the environment in numbers and varieties that dwarf those of the comparatively few microorganisms amenable to laboratory cultivation (7, 13, 31). Corroboration comes from estimates of DNA complexity and the discovery of many unique 16S rRNA gene sequences from numerous environmental sources (8, 10, 28). Collectively, the genomes of the total microbiota found in nature, which we termed the metagenome (11), contain vastly more genetic information than is contained in the culturable subset. Given the profound utility and importance of microorganisms to all biological systems, methods are needed to access the wealth of information within the metagenome. Cloning large fragments of DNA isolated directly from microbes in natural environments provides a method to access soil metagenomic DNA. Previously, we investigated the use of the bacterial artificial chromosome (BAC) vector to express Bacillus cereus genomic DNA (20). The advantage of BAC vectors is that they maintain very large DNA inserts (greater than 100 kb) stably in Escherichia coli (23), facilitating the cloning of large fragments of DNA. Our results demonstrated that expression of heterologous DNA from B. cereus in an E. coli BAC system was detectable at a reasonable frequency (20), validating the idea that the low-copy BAC vector (one to two per cell) (23) could be used to express foreign DNA from foreign promoters in E. coli. Here we describe the construction and initial screening of two BAC libraries made with DNA isolated directly from soil. We found detectable levels of several biochemical activities from BAC library clones. Sequence analysis of selected BAC plasmids encoding such activities and of 16S rRNA genes in one of the libraries confirms the novelty of the genomic information cloned in our libraries. The results show that DNA extracted directly from soil is a valuable source of new genetic information and is accessible by using BAC libraries. Our results demonstrate that both traditional and functional genomics of uncultured microorganisms can be carried out by this approach and that screening of metagenome libraries for activities or gene sequences can provide a basis for conducting genomic analyses of uncultured microorganisms.