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Showing papers by "Utsunomiya University published in 2014"


Journal ArticleDOI
TL;DR: It is shown that CL is converted into a carboxylated metabolite, named carlactonoic acid, byArabidopsis MAX1, the enzymatic function of which had been unknown, and that its methyl ester has the ability to interact with a SL receptor and suppress shoot branching in Arabidopsis.
Abstract: Strigolactones (SLs) stimulate seed germination of root parasitic plants and induce hyphal branching of arbuscular mycorrhizal fungi in the rhizosphere. In addition, they have been classified as a new group of plant hormones essential for shoot branching inhibition. It has been demonstrated thus far that SLs are derived from carotenoid via a biosynthetic precursor carlactone (CL), which is produced by sequential reactions of DWARF27 (D27) enzyme and two carotenoid cleavage dioxygenases CCD7 and CCD8. We previously found an extreme accumulation of CL in the more axillary growth1 (max1) mutant of Arabidopsis, which exhibits increased lateral inflorescences due to SL deficiency, indicating that CL is a probable substrate for MAX1 (CYP711A1), a cytochrome P450 monooxygenase. To elucidate the enzymatic function of MAX1 in SL biosynthesis, we incubated CL with a recombinant MAX1 protein expressed in yeast microsomes. MAX1 catalyzed consecutive oxidations at C-19 of CL to convert the C-19 methyl group into carboxylic acid, 9-desmethyl-9-carboxy-CL [designated as carlactonoic acid (CLA)]. We also identified endogenous CLA and its methyl ester [methyl carlactonoate (MeCLA)] in Arabidopsis plants using LC-MS/MS. Although an exogenous application of either CLA or MeCLA suppressed the growth of lateral inflorescences of the max1 mutant, MeCLA, but not CLA, interacted with Arabidopsis thaliana DWARF14 (AtD14) protein, a putative SL receptor, as shown by differential scanning fluorimetry and hydrolysis activity tests. These results indicate that not only known SLs but also MeCLA are biologically active in inhibiting shoot branching in Arabidopsis.

321 citations


Journal ArticleDOI
TL;DR: The role of SLs in regulating rice root development under phosphate and nitrate limitation is highlighted and the mechanisms underlying this regulatory role involve D3 and modulation of auxin transport from shoots to roots.
Abstract: Strigolactones (SLs) or their derivatives have recently been defined as novel phytohormones that regulate root development. However, it remains unclear whether SLs mediate root growth in response to phosphorus (P) and nitrogen (N) deficiency. In this study, the responses of root development in rice (Oryza sativa L.) to different levels of phosphate and nitrate supply were investigated using wild type (WT) and mutants defective in SL synthesis (d10 and d27) or insensitive to SL (d3). Reduced concentration of either phosphate or nitrate led to increased seminal root length and decreased lateral root density in WT. Limitation of either P or N stimulated SL production and enhanced expression of D10, D17, and D27 and suppressed expression of D3 and D14 in WT roots. Mutation of D10, D27, or D3 caused loss of sensitivity of root response to P and N deficiency. Application of the SL analogue GR24 restored seminal root length and lateral root density in WT and d10 and d27 mutants but not in the d3 mutant, suggesting that SLs were induced by nutrient-limiting conditions and led to changes in rice root growth via D3. Moreover, P or N deficiency or GR24 application reduced the transport of radiolabelled indole-3-acetic acid and the activity of DR5::GUS auxin reporter in WT and d10 and d27 mutants. These findings highlight the role of SLs in regulating rice root development under phosphate and nitrate limitation. The mechanisms underlying this regulatory role involve D3 and modulation of auxin transport from shoots to roots.

249 citations


Journal ArticleDOI
TL;DR: This work uses positional cloning to identify the sex-determining locus of a medaka-related fish, Oryzias dancena, and finds that the locus on the Y chromosome contains a cis-regulatory element that upregulates neighbouring Sox3 expression in developing gonad.
Abstract: Sex chromosomes harbour a primary sex-determining signal that triggers sexual development of the organism. However, diverse sex chromosome systems have been evolved in vertebrates. Here we use positional cloning to identify the sex-determining locus of a medaka-related fish, Oryzias dancena, and find that the locus on the Y chromosome contains a cis-regulatory element that upregulates neighbouring Sox3 expression in developing gonad. Sex-reversed phenotypes in Sox3Y transgenic fish, and Sox3Y loss-of-function mutants all point to its critical role in sex determination. Furthermore, we demonstrate that Sox3 initiates testicular differentiation by upregulating expression of downstream Gsdf, which is highly conserved in fish sex differentiation pathways. Our results not only provide strong evidence for the independent recruitment of Sox3 to male determination in distantly related vertebrates, but also provide direct evidence that a novel sex determination pathway has evolved through co-option of a transcriptional regulator potentially interacted with a conserved downstream component. Sex chromosomes harbour specific sequences that determine the sexual development of the organism; yet these sequences remain unknown for many species. Here, Takehana et al. show that, similarly to mammals, Sox3 on the Y chromosome is the male-determining factor in the medaka-related fish Oryzias dancena.

240 citations



Journal ArticleDOI
TL;DR: An ionic complex of synthetic dsRNA with a carrier peptide in which a cell-penetrating peptide is fused with a polycation sequence as a gene carrier successfully induced rapid and efficient down-regulation of exogenous and endogenous genes.
Abstract: Summary Quick and facile transient RNA interference (RNAi) is one of the most valuable plant biotechnologies for analysing plant gene functions To establish a novel double-strand RNA (dsRNA) delivery system for plants, we developed an ionic complex of synthetic dsRNA with a carrier peptide in which a cell-penetrating peptide is fused with a polycation sequence as a gene carrier The dsRNA–peptide complex is 100–300 nm in diameter and positively charged Infiltration of the complex into intact leaf cells of Arabidopsis thaliana successfully induced rapid and efficient down-regulation of exogenous and endogenous genes such as yellow fluorescent protein and chalcone synthase The present method realizes quick and local gene silencing in specific tissues and/or organs in plants

112 citations


Journal ArticleDOI
TL;DR: A floating aerial LED signage technique by utilizing retro-reflection is proposed, composed of LEDs, a half mirror, and retro-reflective sheeting, which has been successfully formed in free space.
Abstract: We propose a floating aerial LED signage technique by utilizing retro-reflection. The proposed display is composed of LEDs, a half mirror, and retro-reflective sheeting. Directivity of the aerial image formation and size of the aerial image have been investigated. Furthermore, a floating aerial LED sign has been successfully formed in free space.

110 citations


Journal ArticleDOI
N. Agafonova, A. B. Aleksandrov, A. M. Anokhina1, Shigeki Aoki2  +168 moreInstitutions (21)
TL;DR: The OPERA experiment as mentioned in this paper was designed to search for the presence of the lepton lepton decaying into hadrons in appearance mode using the CERN Neutrino to Gran Sasso beam.
Abstract: The OPERA experiment is designed to search for $ u_{\mu} \rightarrow u_{\tau}$ oscillations in appearance mode ie through the direct observation of the $\tau$ lepton in $ u_{\tau}$ charged current interactions The experiment has taken data for five years, since 2008, with the CERN Neutrino to Gran Sasso beam Previously, two $ u_{\tau}$ candidates with a $\tau$ decaying into hadrons were observed in a sub-sample of data of the 2008-2011 runs Here we report the observation of a third $ u_\tau$ candidate in the $\tau^-\to\mu^-$ decay channel coming from the analysis of a sub-sample of the 2012 run Taking into account the estimated background, the absence of $ u_{\mu} \rightarrow u_{\tau}$ oscillations is excluded at the 34 $\sigma$ level

100 citations


Journal ArticleDOI
TL;DR: Glycosylation is fundamental to a wide range of biological processes and its involvement in preventing functional crosstalk of signaling molecules in the body is demonstrated.

83 citations


Journal ArticleDOI
TL;DR: Root exudates from the allelopathic plant, black oat (Avena strigosa Schreb.), were found to contain at least six different germination stimulants for root parasitic plants, but no known strigolactones (SLs).

70 citations


Journal ArticleDOI
TL;DR: This study presents a regulatory mechanism where pyocin is associated with MV production, and implies how the environment impacts MV production in P. aeruginosa under denitrifying conditions and indicates that pyocIn production is activated by nitric oxide, in which the SOS response is involved.
Abstract: Summary Many Gram-negative bacteria produce membrane vesicles (MVs) that serve as vehicles to mediate intraspecies and interspecies interactions. Despite their ubiquity in Gram-negative bacteria and their biological importance, how MV formation is regulated is poorly understood. Pseudomonas aeruginosa is a ubiquitous bacterium that is one of the most extensively studied model organism in MVs. Recent studies highlight the importance of a quorum-sensing signal, Pseudomonas quinolone signal (PQS), in the formation of MVs; however, PQS synthesis requires oxygen and is not produced under anoxic conditions. This situation leads to the question of MV production under anoxic conditions. Here, we examined whether MVs are produced under denitrifying conditions and what kind of factors are involved in the MV production under such condition. Under denitrifying condition, P. aeruginosa PAO1 produced a considerable amount of MVs. Interestingly, pyocin components were found to be accumulated in the isolated MVs. Pyocin-related protein mutants produced less MVs compared with the wild type. We further indicate that pyocin production is activated by nitric oxide, in which the SOS response is involved. This study presents a regulatory mechanism where pyocin is associated with MV production, and further implies how the environment impacts MV production in P. aeruginosa.

69 citations


Journal ArticleDOI
TL;DR: These methods are effective to identify candidate species that could be developed as biofertilizers for target crops and also evaluate their phylogenetic relationships based on 16S rRNA sequence data.
Abstract: We aimed to identify plant growth-promoting rhizobacteria that could be used to develop a biofertilizer for rice. To obtain plant growth-promoting rhizobacteria, rhizosphere soils from different crops (rice, wheat, oats, crabgrass, maize, ryegrass, and sweet potato) were inoculated to rice plants. In total, 166 different bacteria were isolated and their plant growth-promoting traits were evaluated in terms of colony morphology, indole-3-acetic acid production, acetylene reduction activity, and phosphate solubilization activity. Moreover, genetic analysis was carried out to evaluate their phylogenetic relationships based on 16S rRNA sequence data. Strains of Bacillus altitudinis, Pseudomonas monteilii, and Pseudomonas mandelii formed associations with rice plants and fixed nitrogen. A strain of Rhizobium daejeonense showed nitrogen fixation activity in an in vitro assay and in vivo. Strains of B. altitudinis and R. daejeonense derived from rice rhizosphere soil, strains of P. monteilii and Enterobacter cloacae derived from wheat rhizosphere soil, and a strain of Bacillus pumilus derived from maize rhizosphere soil significantly promoted rice plant growth. These methods are effective to identify candidate species that could be developed as biofertilizers for target crops.

Journal ArticleDOI
TL;DR: Results suggest that spinosad resistance of T. palmi is conferred by reduced sensitivity of TPα6 and cytochrome P450-mediated detoxification.

Journal ArticleDOI
TL;DR: Results presented here show that resistance to parasitic weeds based on low strigolactone exudation does exist within faba bean germplasm, and selection for this trait is feasible in a breeding program.
Abstract: Faba bean yield is severely constrained in the Mediterranean region and Middle East by the parasitic weeds Orobanche crenata, O. foetida, and Phelipanche aegyptiaca. Seed germination of these weeds is triggered upon recognition of host root exudates. Only recently faba bean accessions have been identified with resistance based in low induction of parasitic seed germination, but the underlying mechanism was not identified. Strigolactones are a group of terpenoid lactones involved in the host recognition by parasitic plants. Our LC-MS/MS analysis of root exudates of the susceptible accession Prothabon detected orobanchol, orobanchyl acetate, and a novel germination stimulant. A time course analysis indicated that their concentration increased with plant age. However, low or undetectable amounts of these germination stimulants were detected in root exudates of the resistant lines Quijote and Navio at all plant ages. A time course analysis of seed germination induced by root exudates of each faba bean accession indicated important differences in the ability to stimulate parasitic germination. Results presented here show that resistance to parasitic weeds based on low strigolactone exudation does exist within faba bean germplasm. Therefore, selection for this trait is feasible in a breeding program. The remarkable fact that low induction of germination is similarly operative against O. crenata, O. foetida, and P. aegyptiaca reinforces the value of this resistance.

Journal ArticleDOI
TL;DR: In this paper, a novel ferroelectric A-site-ordered double perovskite CaMnTi2O6 was synthesized under high-pressure and investigated its structure, magnetic and dielectric properties, and high-temperature phase transition behavior.
Abstract: We successfully synthesized a novel ferroelectric A-site-ordered double perovskite CaMnTi2O6 under high-pressure and investigated its structure, ferroelectric, magnetic and dielectric properties, and high-temperature phase transition behavior. Optical second harmonic generation signal, by frequency doubling 1064 nm radiation to 532 nm, was observed and its efficiency is about 9 times as much as that of SiO2 (α-quartz). This compound possesses a tetragonal polar structure with space group P42mc. P-E hysteresis measurement demonstrated that CaMnTi2O6 is also ferroelectric. A spontaneous polarization calculated by use of point charge model and the observed remnant polarization are 24 and 3.5 μC/cm2, respectively. CaMnTi2O6 undergoes a ferroelectric–paraelectric order–disorder-type phase transition at 630 K. The structural analysis implies that both the ordering of shift of Mn2+ from the square-planar and the off-center displacement of Ti4+ in TiO6 octahedra are responsible for ferroelectricity. CaMnTi2O6 bel...

Journal ArticleDOI
TL;DR: In this paper, the concept of spatial statistical optics is introduced with the aim of placing particular focus on spatial statistics of the optical field, rather than on their temporal statistics, and their unique capabilities for coherence and polarization shaping as well as synthesizing stochastic optical fields with desired statistical properties are introduced.
Abstract: Classical statistical optics is revisited with the aim of introducing the concept of spatial statistical optics that places particular focus and special emphasis on spatial statistics of the optical field, rather than on their temporal statistics. The principles of emerging technology of statistical correlation holography based on spatial statistical optics are reviewed, and their unique capabilities for coherence and polarization shaping as well as synthesizing stochastic optical fields with desired statistical properties are introduced.

Journal ArticleDOI
TL;DR: In this paper, the rate equation for ammonia decomposition using a Ru/SiO2 catalyst was derived and compared with experimental results, showing that a 15% increase in conversion can be achieved by using thinner palladium membrane.

Journal ArticleDOI
TL;DR: In this paper, a two-dimensional birefringence distribution measurement system with a sampling rate of 1.3MHz is proposed. And a polarization image sensor is developed as core device of the system, which is composed of a pixelated polarizer array made from photonic crystal and a parallel read out circuit with a multi-channel analog to digital converter specialized for 2D polarization detection.

Journal ArticleDOI
TL;DR: It is shown that production and transport of auxin in saffron corms could act synergistically with SLs to arrest the outgrowth of the axillary buds, similar to the control of above-ground shoot branching.
Abstract: In saffron (Crocus sativus), new corms develop at the base of every shoot developed from the maternal corm, a globular underground storage stem. Since the degree of bud sprouts influences the number and size of new corms, and strigolactones (SLs) suppress growth of pre-formed axillary bud, it was considered appropriate to investigate SL involvement in physiology and molecular biology in saffron. We focused on two of the genes within the SL pathway, CCD7 and CCD8, encoding carotenoid cleavage enzymes required for the production of SLs. The CsCCD7 and CsCCD8 genes are the first ones isolated and characterized from a non-grass monocotyledonous plant. CsCCD7 and CsCCD8 expression showed some overlapping, although they were not identical. CsCCD8 was highly expressed in quiescent axillary buds and decapitation dramatically reduced its expression levels, suggesting its involvement in the suppression of axillary bud outgrowth. Furthermore, in vitro experiments showed also the involvement of auxin, cytokinin and jasmonic acid on the sprouting of axillary buds from corms in which the apical bud was removed. In addition, CsCCD8 expression, but not CsCCD7, was higher in the newly developed vascular tissue of axillary buds compared to the vascular tissue of the apical bud. We showed that production and transport of auxin in saffron corms could act synergistically with SLs to arrest the outgrowth of the axillary buds, similar to the control of above-ground shoot branching. In addition, jasmonic acid seems to play a prominent role in bud dormancy in saffron. While cytokinins from roots promote bud outgrowth. In addition the expression results of CsCCD8 suggest that SLs could positively regulate procambial activity and the development of new vascular tissues connecting leaves with the mother corm.

Journal ArticleDOI
TL;DR: The interspecific and intergeneric incompatibilities between Brassicaceae crops and their wild relatives are reviewed, and the production, characterization, and improvement of synthetic amphidiploid lines, alien gene introgression lines, alloplasmic lines, monosomal alien chromosome addition lines, and monosomic alien chromosome substitution lines are reviewed.
Abstract: In Brassicaceae crop breeding programs, wild relatives have been evaluated as genetic resources to develop new cultivars with biotic and abiotic stress resistance. This has become necessary because of the diversification of ecotypes of diseases and pests, changing food preferences, advances in production technology, the use of new approaches such as in vitro breeding programs, and the need for economical production of F1 seed. To produce potential new cultivars, interspecific and intergeneric hybridizations have been performed between cultivated species and between cultivated species and their wild relatives. Furthermore, interspecific and intergeneric hybrids have been successfully produced using embryo rescue techniques. In this paper, we review the interspecific and intergeneric incompatibilities between Brassicaceae crops and their wild relatives, and the production, characterization, and improvement of synthetic amphidiploid lines, alien gene introgression lines, alloplasmic lines, monosomic alien chromosome addition lines, and monosomic alien chromosome substitution lines. The goal is to provide useful materials to support practical breeding strategies and to study the genetic effects of individual chromosomes on plant traits, the number of genes that control a trait, their linkage relationships, and genetic improvement in Brassicaceae crops.

Journal ArticleDOI
TL;DR: A holographic three-dimensional display system with a viewing angle of 360°, by using a high-speed digital micromirror device (DMD), that enables simultaneous observation by multiple viewers at an extremely close range is proposed.
Abstract: A holographic three-dimensional display system with a viewing angle of 360°, by using a high-speed digital micromirror device (DMD), has been proposed. The wavefront modulated by the DMD enters a rotating mirror tilted vertically downward. The synchronization of the rotating mirror and holograms displayed on the DMD allows for the reconstruction of a wavefront propagating in all horizontal directions. An optical experiment has been demonstrated in order to verify our proposed system. Binocular vision is realized from anywhere within the horizontal plane. Our display system enables simultaneous observation by multiple viewers at an extremely close range.

Journal ArticleDOI
TL;DR: In this paper, the authors derived an effective shape of the flux barrier in an interior permanent magnet (IPM) motor and applied topology optimization to the rotor core using a multistep genetic algorithm to determine an effective flux barrier.
Abstract: This paper derives an effective shape of the flux barrier in an interior permanent magnet (IPM) motor. IPM motors generally have many design parameters such as the current phase angle, shape of the rotor and stator's iron core, and shape and position of the magnet. The flux barrier plays an important role in controlling torque characteristics. We apply topology optimization (TO) to the rotor core using a multistep genetic algorithm to determine an effective flux barrier. Furthermore, we extend the TO to combinatorial optimization for considering its effect on the current phase angle. Thus, a reasonable flux barrier with an optimal phase angle is determined.

Journal ArticleDOI
TL;DR: A simplified method for Agrobacterium-mediated transformation of sporelings, and it is termed Agar-utilized Transformation with Pouring Solutions (AgarTrap), which will promote future molecular biological study in M. polymorpha.
Abstract: The liverwort Marchantia polymorpha L. is being developed as an emerging model plant, and several transformation techniques were recently reported. Examples are biolistic- and Agrobacterium-mediated transformation methods. Here, we report a simplified method for Agrobacterium-mediated transformation of sporelings, and it is termed Agar-utilized Transformation with Pouring Solutions (AgarTrap). The procedure of the AgarTrap was carried out by simply exchanging appropriate solutions in a Petri dish, and completed within a week, successfully yielding sufficient numbers of independent transformants for molecular analysis (e.g. characterization of gene/protein function) in a single experiment. The AgarTrap method will promote future molecular biological study in M. polymorpha.

Journal ArticleDOI
TL;DR: The needle penetrometer was developed in Japan and released as a suggested method by the Rock Mechanics Committee of the Japan Society of Civil Engineers (JSCE-RMC 1980).
Abstract: Estimation of mechanical properties of intact rock is usually required for assessment of the stability of rock structures. They are also important elements of the rock classifications used in empirical assessment of rock masses. Measurement of these properties requires laboratory testing, which must be performed on samples of certain dimensions to fulfill testing standards and/or suggested methods. Laboratory tests are also time-consuming due to sample preparation, as well as experimental procedures often require high-capacity loading devices. High-quality core samples recommended by standards and/or suggested methods for the laboratory tests cannot always be obtained, particularly from weak and clay-bearing rocks. For these reasons, some simple and inexpensive index test methods have been developed to indirectly estimate the mechanical properties of intact rock (ISRM 2007). However, even preparation of smaller samples from weak and clay-bearing rocks for some index tests is still troublesome. In addition, geo-engineering and/or restoration studies on natural and man-made historical rock structures and monuments or buildings built with masonry construction techniques may require the determination of mechanical properties of intact rock. Sampling from such ancient sites is not allowed due to preservation, and environmental and other concerns resulting in the lack of mechanical data for those studies. To overcome the above-mentioned difficulties, a portable, lightweight and non-destructive testing device, called needle penetrometer, was developed in Japan and released as a suggested method by the Rock Mechanics Committee of the Japan Society of Civil Engineers (JSCE-RMC 1980). Similarly, Public Works Research Institute (PWRI 1987) published a draft manual of the test for weak rock mass Please send any written comments on this ISRM Suggested Method to Prof. Resat Ulusay, President of the ISRM Commission on Testing Methods, Hacettepe University, Department of Geological Engineering, 06800 Beytepe, Ankara, Turkey.

Journal ArticleDOI
07 Oct 2014-PLOS ONE
TL;DR: A de novo assembly transcriptome and inferred proteome of the Japanese fire bellied newt (Cynops pyrrhogaster), which was obtained from eyeball samples of day 0–14 after surgical removal of the lens and neural retina, is provided to facilitate the study of early processes of retinal regeneration.
Abstract: Retinal regeneration in the adult newt is a useful system to uncover essential mechanisms underlying the regeneration of body parts of this animal as well as to find clues to treat retinal disorders such as proliferative vitreoretinopathy. Here, to facilitate the study of early processes of retinal regeneration, we provide a de novo assembly transcriptome and inferred proteome of the Japanese fire bellied newt (Cynops pyrrhogaster), which was obtained from eyeball samples of day 0–14 after surgical removal of the lens and neural retina. This transcriptome (237,120 in silico transcripts) contains most information of cDNAs/ESTs which has been reported in newts (C. pyrrhogaster, Pleurodeles waltl and Notophthalmus viridescence) thus far. On the other hand, de novo assembly transcriptomes reported lately for N. viridescence only covered 16–31% of this transcriptome, suggesting that most constituents of this transcriptome are specific to the regenerating eye tissues of C. pyrrhogaster. A total of 87,102 in silico transcripts of this transcriptome were functionally annotated. Coding sequence prediction in combination with functional annotation revealed that 76,968 in silico transcripts encode protein/peptides recorded in public databases so far, whereas 17,316 might be unique. qPCR and Sanger sequencing demonstrated that this transcriptome contains much information pertaining to genes that are regulated in association with cell reprogramming, cell-cycle re-entry/proliferation, and tissue patterning in an early phase of retinal regeneration. This data also provides important insight for further investigations addressing cellular mechanisms and molecular networks underlying retinal regeneration as well as differences between retinal regeneration and disorders. This transcriptome can be applied to ensuing comprehensive gene screening steps, providing candidate genes, regardless of whether annotated or unique, to uncover essential mechanisms underlying early processes of retinal regeneration.

Journal ArticleDOI
TL;DR: High-performance liquid chromatography analysis revealed that amiE functions as an AHL acylase, which hydrolyzes the amide bond of AHL, and the expression of AmiE in Pseudomonas aeruginosa PAO1 reduced AHL accumulation and elastase activity, which were regulated by AHL-mediated quorum sensing.
Abstract: Many Gram-negative bacteria use N-acyl-l-homoserine lactones (AHLs) as quorum-sensing signal molecules. We have reported that Acinetobacter strains isolated from activated sludge have AHL-degrading activity. In this study, we cloned the amiE gene as an AHL-degradative gene from the genomic library of Acinetobacter sp. strain Ooi24. High-performance liquid chromatography analysis revealed that AmiE functions as an AHL acylase, which hydrolyzes the amide bond of AHL. AmiE showed a high level of degrading activity against AHLs with long acyl chains but no activity against AHLs with acyl chains shorter than eight carbons. AmiE showed homology with a member of the amidases (EC 3.5.1.4) but not with any known AHL acylase enzymes. An amino acid sequence of AmiE from Ooi24 showed greater than 99% identities with uncharacterized proteins from Acinetobacter ursingii CIP 107286 and Acinetobacter sp. strain CIP 102129, but it was not found in the draft or complete genome sequences of other Acinetobacter strains. The presence of transposase-like genes around the amiE genes of these three Acinetobacter strains suggests that amiE is transferred by a putative transposon. Furthermore, the expression of AmiE in Pseudomonas aeruginosa PAO1 reduced AHL accumulation and elastase activity, which were regulated by AHL-mediated quorum sensing.

Journal ArticleDOI
TL;DR: In this article, the amount of CO2 generated by the photocatalytic degradation of acetic acid on these ferrites was measured under irradiation by a xenon lamp with a power of 300 W.

Journal ArticleDOI
TL;DR: Results suggest that in a spontaneous discrimination task, jungle crows use an object-file mechanism to compare quantities, even when the number of items in one of the arrays exceeds four.

Journal ArticleDOI
07 Aug 2014-PLOS ONE
TL;DR: The aggregation pheromone of T. palmi is identified as (R)-lavandulyl 3-methyl-3-butenoate by spectroscopic, chromatographic and behavioural analysis.
Abstract: The objective of this study was to identify the aggregation pheromone of the melon thrips Thrips palmi, a major pest of vegetable and ornamental plants around the world. The species causes damage both through feeding activities and as a vector of tospoviruses, and is a threat to world trade and European horticulture. Improved methods of detecting and controlling this species are needed and the identification of an aggregation pheromone will contribute to this requirement. Bioassays with a Y-tube olfactometer showed that virgin female T. palmi were attracted to the odour of live males, but not to that of live females, and that mixed-age adults of both sexes were attracted to the odour of live males, indicating the presence of a male-produced aggregation pheromone. Examination of the headspace volatiles of adult male T. palmi revealed only one compound that was not found in adult females. It was identified by comparison of its mass spectrum and chromatographic details with those of similar compounds. This compound had a structure like that of the previously identified male-produced aggregation pheromone of the western flower thrips Frankliniella occidentalis. The compound was synthesised and tested in eggplant crops infested with T. palmi in Japan. Significantly greater numbers of both males and females were attracted to traps baited with the putative aggregation pheromone compared to unbaited traps. The aggregation pheromone of T. palmi is thus identified as (R)-lavandulyl 3-methyl-3-butenoate by spectroscopic, chromatographic and behavioural analysis.

Journal ArticleDOI
TL;DR: The timing of divergence suggests that the shift of spawning from spring to autumn, coupled with embryonic diapause, convergently emerged twice in the evolution of bitterling, possibly as an adaptation to the climate of the late Pliocene.
Abstract: Bitterling (Teleostei: Acheilognathinae) are small cyprinid fishes with a discrete distribution in East Asia and Europe. We used a complete mitochondrial cytochrome b sequence (1141 bp) from 49 species or subspecies in three genera (Tanakia, Rhodeus, and Acheilognathus), sampled across the major part of their distribution, to elucidate their phylogeny and biogeography, focusing particularly on their origin and dispersal. Based on high support value, the monophyletic Acheilognathinae separated into two major clades, Acheilognathus and Tanakia-Rhodeus. In the latter clade, the monophyly of Rhodeus was poorly supported, though it was topologically nested in Tanakia. On the basis of molecular-clock calibration, both clades diverged in the middle Miocene, with Tanakia-Rhodeus diverging slightly earlier than Acheilognathus. The Tanakia-Rhodeus clade expanded its distribution westward from the Far East, eventually reaching Europe, while Acheilognathus dispersed in the temperate regions of East Asia. A feature common to both clades is that most extant species, including Japanese endemics, appeared by the end of the Pliocene, corresponding with the present delineation of the Japanese archipelago. Autumn-spawning species with an embryonic diapause, unique to bitterling among cyprinid fishes, formed two distinct lineages (barbatulusrhombeus and longipinnis-typus) within Acheilognathus. The estimated time of divergence of the two lineages was approximately from the late Pliocene, a period characterized by glaciations. The timing of divergence suggests that the shift of spawning from spring to autumn, coupled with embryonic diapause, convergently emerged twice in the evolution of bitterling, possibly as an adaptation to the climate of the late Pliocene.

Journal ArticleDOI
TL;DR: An investigation of congenitally hypothyroid mutant rdw rats reveals an important function of thyroid hormones in cerebellar formation and in the regulation of axonal transport of dopamine, which will be useful for studies of brain function and behavioural disorders in congenital Hypothyroidism.
Abstract: Thyroid hormones play crucial roles in the development and functional maintenance of the central nervous system. Despite extensive studies of the neural function of thyroid hormones, little is known about the effects of hypothyroidism on behavioural traits and the mechanisms underlying such effects. In the present study, we report an investigation of congenitally hypothyroid mutant rdw rats, revealing a novel function of thyroid hormones in the central nervous system. The rdw rats were subjected to behavioural analyses such as the rotarod test, open field test and circadian activity measurement. To determine the cause of behavioural disorders, cerebellar morphogenesis was examined by immunohistochemical analysis, and the axonal transport of dopamine in the nigrostriatal pathway was analysed by high-performance liquid chromatography and western blotting. The effects of thyroxine administration to the rdw rats were examined by behavioural analysis. The rdw rats showed severe impairment of motor coordination and balance. This could be explained by the fact that the rats showed severe retardation of cerebellar morphogenesis, which correlates with the small somata and poor dendritic arborisation of Purkinje cells and retarded migration of granule cells particularly during the first two postnatal weeks. Moreover, the rdw rats showed hypoactivity, characterised by decreased circadian locomotor activity. After weaning, thyroxine administration improved the dwarfism in rdw rats but had no effect on cerebellar function. In addition, the rdw rats showed anxiety and depression intrinsically to novel surroundings. Interestingly, the rdw rats showed high levels of dopamine in the substantia nigra and low levels in the striatum, an important centre for the coordination of behaviour. Furthermore, low levels of tubulin in the striatum were detected, indicating the aberrant axonal transport of dopamine in the nigrostriatal pathway as a result of the reduced delivery of microtubules. These findings indicate an important function of thyroid hormones in cerebellar formation and in the regulation of axonal transport of dopamine. Moreover, rdw rats will be useful for studies of brain function and behavioural disorders in congenital hypothyroidism.