Wageningen University and Research Centre

About: Wageningen University and Research Centre is a education organization based out in Wageningen, Netherlands. It is known for research contribution in the topics: Population & Sustainability. The organization has 23474 authors who have published 54833 publications receiving 2608897 citations.

Small habitat size and isolation can promote species richness: second-order effects on biodiversity in shallow lakes and ponds

Abstract: Contemporary ecological landscape planning is often based on the assumption that small isolated habitat patches sustain relatively few species. Here, we suggest that for shallow lakes and ponds, the opposite can be true for some groups of organisms. Fish communities tend to be poor or even absent in small isolated lakes. However, submerged vegetation is often more abundant in such waterbodies. As a consequence of low fish biomass and high vegetation abundance, the richness of aquatic birds, plants, amphibians and invertebrates is often relatively high in small, shallow, isolated lakes. Although the rarity of fish is in line with expectations from the ruling paradigms about effects of habitat fragmentation in landscape ecology, the relative richness of various other groups of organisms in small ponds is opposite to these expectations. The case of shallow lakes illustrates that incorporating ecological interactions is essential to understanding the potential effects of habitat fragmentation. Single-species meta-population approaches may be misleading if ecological interactions are strong. A meta-community approach that explicitly incorporates biotic interactions, also those involving different trophic levels, is needed. Our diagnosis suggests that connection of isolated habitat fragments may in some cases reduce, rather than enhance, landscape-level biodiversity, and implies that biodiversity at the regional level will be maximized if the local habitat patches vary widely in size and degree of connectivity.

Biochar boosts tropical but not temperate crop yields

Abstract: Applying biochar to soil is thought to have multiple benefits, from helping mitigate climate change [1, 2], to managing waste [3] to conserving soil [4]. Biochar is also widely assumed to boost crop yield [5, 6], but there is controversy regarding the extent and cause of any yield benefit [7]. Here we use a global-scale meta-analysis to show that biochar has, on average, no effect on crop yield in temperate latitudes, yet elicits a 25% average increase in yield in the tropics. In the tropics, biochar increased yield through liming and fertilization, consistent with the low soil pH, low fertility, and low fertilizer inputs typical of arable tropical soils. We also found that, in tropical soils, high-nutrient biochar inputs stimulated yield substantially more than low-nutrient biochar, further supporting the role of nutrient fertilization in the observed yield stimulation. In contrast, arable soils in temperate regions are moderate in pH, higher in fertility, and generally receive higher fertilizer inputs, leaving little room for additional benefits from biochar. Our findings demonstrate that the yield-stimulating effects of biochar are not universal, but may especially benefit agriculture in low-nutrient, acidic soils in the tropics. Biochar management in temperate zones should focus on potential non-yield benefits such as lime and fertilizer cost savings, greenhouse gas emissions control, and other ecosystem services.

Photosynthetic control of electron transport and the regulation of gene expression

Abstract: The term ‘photosynthetic control’ describes the short- and long-term mechanisms that regulate reactions in the photosynthetic electron transport (PET) chain so that the rate of production of ATP and NADPH is coordinated with the rate of their utilization in metabolism. At low irradiances these mechanisms serve to optimize light use efficiency, while at high irradiances they operate to dissipate excess excitation energy as heat. Similarly, the production of ATP and NADPH in ratios tailored to meet demand is finely tuned by a sophisticated series of controls that prevents the accumulation of high NAD(P)H/NAD(P) ratios and ATP/ADP ratios that would lead to potentially harmful over-reduction and inactivation of PET chain components. In recent years, photosynthetic control has also been extrapolated to the regulation of gene expression because mechanisms that are identical or similar to those that serve to regulate electron flow through the PET chain also coordinate the regulated expression of genes encoding photosynthetic proteins. This requires coordinated gene expression in the chloroplasts, mitochondria, and nuclei, involving complex networks of forward and retrograde signalling pathways. Photosynthetic control operates to control photosynthetic gene expression in response to environmental and metabolic changes. Mining literature data on transcriptome profiles of C3 and C4 leaves from plants grown under high atmospheric carbon dioxide (CO2) levels compared with those grown with ambient CO2 reveals that the transition to higher photorespiratory conditions in C3 plants enhances the expression of genes associated with cyclic electron flow pathways in Arabidopsis thaliana, consistent with the higher ATP requirement (relative to NADPH) of photorespiration.

Ground‐based investigation of soil moisture variability within remote sensing footprints During the Southern Great Plains 1997 (SGP97) Hydrology Experiment

Abstract: Surface soil moisture content is highly variable in both space and time. While remote sensing provides an effective methodology for mapping surface moisture content over large areas, it averages within-pixel variability thereby masking the underlying heterogeneity observed at the land surface. This variability must be better understood in order to rigorously evaluate sensor performance and to enhance the utility of the larger-scale remotely sensed averages by quantifying the underlying variability that remote sensing cannot record explicitly. In support of the Southern Great Plains 1997 (SGP97) Hydrology Experiment (a surface soil moisture mapping mission conducted between June 18 and July 17, 1997, in central Oklahoma) an investigation was conducted to characterize soil moisture variability within remote sensing footprints (approximately 0.64 km2) with more certainty than would be afforded with conventional gravimetric moisture content sampling. Nearly every day during the experiment period, portable impedance probes were used to intensively monitor volumetric moisture content in the 0- to 6-cm surface soil layer at six footprint-sized fields scattered over the SGP97 study area. A minimum of 49 daily moisture content measurements were made on most fields. Higher-resolution grid and transect data were also collected periodically. In total, more than 11,000 impedance probe measurements of volumetric moisture content were made at the six sites by over 35 SGP97 participants. The wide spatial distribution of the sites, combined with the intensive, near-daily monitoring, provided a unique opportunity (relative to previous smaller-scale and shorter-duration soil moisture studies) to characterize variations in surface moisture content over a range of wetness conditions. In this paper the range and temporal dynamics of the variability in moisture content within each of the six fields are described, as are general relationships between the variability and footprint-mean moisture content. Results indicate that distinct differences in mean moisture content between the six sites are consistent with variations in soil type, vegetation cover, and rainfall gradients. Within fields the standard deviation, coefficient of variation, skewness, and kurtosis increased with decreasing moisture content; the distribution of surface moisture content evolved from negatively skewed/nonnormal under very wet conditions, to normal in the midrange of mean moisture content, to positively skewed/nonnormal under dry conditions; and agricultural practices of row tilling and terracing were shown to exert a major control on observed moisture content variations. Results presented here can be utilized to better evaluate sensor performance, to extrapolate estimates of subgrid-scale variations in moisture content across the entire SGP97 region, and in the parameterization of soil moisture dynamics in hydrological and land surface models.

Global atmospheric carbon budget: results from an ensemble of atmospheric CO2 inversions.

Abstract: . Atmospheric CO2 inversions estimate surface carbon fluxes from an optimal fit to atmospheric CO2 measurements, usually including prior constraints on the flux estimates. Eleven sets of carbon flux estimates are compared, generated by different inversions systems that vary in their inversions methods, choice of atmospheric data, transport model and prior information. The inversions were run for at least 5 yr in the period between 1990 and 2010. Mean fluxes for 2001–2004, seasonal cycles, interannual variability and trends are compared for the tropics and northern and southern extra-tropics, and separately for land and ocean. Some continental/basin-scale subdivisions are also considered where the atmospheric network is denser. Four-year mean fluxes are reasonably consistent across inversions at global/latitudinal scale, with a large total (land plus ocean) carbon uptake in the north (−3.4 Pg C yr−1 (±0.5 Pg C yr−1 standard deviation), with slightly more uptake over land than over ocean), a significant although more variable source over the tropics (1.6 ± 0.9 Pg C yr−1) and a compensatory sink of similar magnitude in the south (−1.4 ± 0.5 Pg C yr−1) corresponding mainly to an ocean sink. Largest differences across inversions occur in the balance between tropical land sources and southern land sinks. Interannual variability (IAV) in carbon fluxes is larger for land than ocean regions (standard deviation around 1.06 versus 0.33 Pg C yr−1 for the 1996–2007 period), with much higher consistency among the inversions for the land. While the tropical land explains most of the IAV (standard deviation ~ 0.65 Pg C yr−1), the northern and southern land also contribute (standard deviation ~ 0.39 Pg C yr−1). Most inversions tend to indicate an increase of the northern land carbon uptake from late 1990s to 2008 (around 0.1 Pg C yr−1, predominantly in North Asia. The mean seasonal cycle appears to be well constrained by the atmospheric data over the northern land (at the continental scale), but still highly dependent on the prior flux seasonality over the ocean. Finally we provide recommendations to interpret the regional fluxes, along with the uncertainty estimates.