Showing papers by "Washington State University published in 2012"

Sensor-Based Activity Recognition

Abstract: Research on sensor-based activity recognition has, recently, made significant progress and is attracting growing attention in a number of disciplines and application domains. However, there is a lack of high-level overview on this topic that can inform related communities of the research state of the art. In this paper, we present a comprehensive survey to examine the development and current status of various aspects of sensor-based activity recognition. We first discuss the general rationale and distinctions of vision-based and sensor-based activity recognition. Then, we review the major approaches and methods associated with sensor-based activity monitoring, modeling, and recognition from which strengths and weaknesses of those approaches are highlighted. We make a primary distinction in this paper between data-driven and knowledge-driven approaches, and use this distinction to structure our survey. We also discuss some promising directions for future research.

Human aneuploidy: mechanisms and new insights into an age-old problem

Abstract: Trisomic and monosomic (aneuploid) embryos account for at least 10% of human pregnancies and, for women nearing the end of their reproductive lifespan, the incidence may exceed 50%. The errors that lead to aneuploidy almost always occur in the oocyte but, despite intensive investigation, the underlying molecular basis has remained elusive. Recent studies of humans and model organisms have shed new light on the complexity of meiotic defects, providing evidence that the age-related increase in errors in the human female is not attributable to a single factor but to an interplay between unique features of oogenesis and a host of endogenous and exogenous factors.

The Archaeology of Mind: Neuroevolutionary Origins of Human Emotions

Abstract: What makes us happy? What makes us sad? How do we come to feel a sense of enthusiasm? What fills us with lust, anger, fear, or tenderness? Traditional behavioral and cognitive neuroscience have yet to provide satisfactory answers. The Archaeology of Mind presents an affective neuroscience approach-which takes into consideration basic mental processes, brain functions, and emotional behaviors that all mammals share-to locate the neural mechanisms of emotional expression. It reveals-for the first time-the deep neural sources of our values and basic emotional feelings. This book elaborates on the seven emotional systems that explain how we live and behave. These systems originate in deep areas of the brain that are remarkably similar across all mammalian species. When they are disrupted, we find the origins of emotional disorders: - SEEKING: how the brain generates a euphoric and expectant response - FEAR: how the brain responds to the threat of physical danger and death - RAGE: sources of irritation and fury in the brain - LUST: how sexual desire and attachments are elaborated in the brain - CARE: sources of maternal nurturance - GRIEF: sources of non-sexual attachments - PLAY: how the brain generates joyous, rough-and-tumble interactions - SELF: a hypothesis explaining how affects might be elaborated in the brain The book offers an evidence-based evolutionary taxonomy of emotions and affects and, as such, a brand-new clinical paradigm for treating psychiatric disorders in clinical practice.

Radiative Absorption Enhancements Due to the Mixing State of Atmospheric Black Carbon

Abstract: Atmospheric black carbon (BC) warms Earth’s climate, and its reduction has been targeted for near-term climate change mitigation. Models that include forcing by BC assume internal mixing with non-BC aerosol components that enhance BC absorption, often by a factor of ~2; such model estimates have yet to be clearly validated through atmospheric observations. Here, direct in situ measurements of BC absorption enhancements ( E abs ) and mixing state are reported for two California regions. The observed E abs is small—6% on average at 532 nm—and increases weakly with photochemical aging. The E abs is less than predicted from observationally constrained theoretical calculations, suggesting that many climate models may overestimate warming by BC. These ambient observations stand in contrast to laboratory measurements that show substantial E abs for BC are possible.

Long-distance gene flow and adaptation of forest trees to rapid climate change

Abstract: Forest trees are the dominant species in many parts of the world and predicting how they might respond to climate change is a vital global concern. Trees are capable of long-distance gene flow, which can promote adaptive evolution in novel environments by increasing genetic variation for fitness. It is unclear, however, if this can compensate for maladaptive effects of gene flow and for the long-generation times of trees. We critically review data on the extent of long-distance gene flow and summarise theory that allows us to predict evolutionary responses of trees to climate change. Estimates of long-distance gene flow based both on direct observations and on genetic methods provide evidence that genes can move over spatial scales larger than habitat shifts predicted under climate change within one generation. Both theoretical and empirical data suggest that the positive effects of gene flow on adaptation may dominate in many instances. The balance of positive to negative consequences of gene flow may, however, differ for leading edge, core and rear sections of forest distributions. We propose future experimental and theoretical research that would better integrate dispersal biology with evolutionary quantitative genetics and improve predictions of tree responses to climate change.

Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

Abstract: We provide here a comparative genome analysis of ten strains within the Pseudomonas fluorescens group including seven new genomic sequences. These strains exhibit a diverse spectrum of traits involved in biological control and other multitrophic interactions with plants, microbes, and insects. Multilocus sequence analysis placed the strains in three sub-clades, which was reinforced by high levels of synteny, size of core genomes, and relatedness of orthologous genes between strains within a sub-clade. The heterogeneity of the P. fluorescens group was reflected in the large size of its pan-genome, which makes up approximately 54% of the pan-genome of the genus as a whole, and a core genome representing only 45–52% of the genome of any individual strain. We discovered genes for traits that were not known previously in the strains, including genes for the biosynthesis of the siderophores achromobactin and pseudomonine and the antibiotic 2-hexyl-5-propyl-alkylresorcinol; novel bacteriocins; type II, III, and VI secretion systems; and insect toxins. Certain gene clusters, such as those for two type III secretion systems, are present only in specific sub-clades, suggesting vertical inheritance. Almost all of the genes associated with multitrophic interactions map to genomic regions present in only a subset of the strains or unique to a specific strain. To explore the evolutionary origin of these genes, we mapped their distributions relative to the locations of mobile genetic elements and repetitive extragenic palindromic (REP) elements in each genome. The mobile genetic elements and many strain-specific genes fall into regions devoid of REP elements (i.e., REP deserts) and regions displaying atypical tri-nucleotide composition, possibly indicating relatively recent acquisition of these loci. Collectively, the results of this study highlight the enormous heterogeneity of the P. fluorescens group and the importance of the variable genome in tailoring individual strains to their specific lifestyles and functional repertoire.

Oxygen Electrocatalysts for Water Electrolyzers and Reversible Fuel Cells: Status and Perspective

Abstract: Hydrogen production by electrochemical water electrolysis has received great attention as an alternative technology for energy conversion and storage. The oxygen electrode has a substantial effect on the performance and durability of water electrolyzers and reversible (or regenerative) fuel cells because of its intrinsically slow kinetics for oxygen evolution/reduction and poor durability under harsh operating environments. To improve oxygen kinetics and durability of the electrode, extensive studies for highly active and stable oxygen electrocatalysts have been performed. However, due to the thermodynamic instability of transition metals in acidic media, noble metal compounds have been primarily utilized as electrocatalysts in water electrolyzers and reversible fuel cells. For water electrolyzer applications, single noble metal oxides such as ruthenium oxide and iridium oxide have been studied, and binary or ternary metal oxides have been developed to obtain synergistic effects of each component. On the other hand, a variety of bifunctional electrocatalysts with a combination of monofunctional electrocatalysts such as platinum for oxygen reduction and iridium oxide for oxygen evolution for reversible fuel cell applications have been mainly proposed. Practically, supported iridium oxide-on-platinum, its reverse type, and non-precious metal-supported platinum and iridium bifunctional electrocatalysts have been developed. Recent theoretical calculations and experimental studies in terms of water electrolysis and fuel cell technology suggest the effective ways to cope with current major challenges of cost and durability of oxygen electrocatalysts for technical applications.

Scientific objectives of Einstein Telescope

Abstract: The advanced interferometer network will herald a new era in observational astronomy. There is a very strong science case to go beyond the advanced detector network and build detectors that operate in a frequency range from 1 Hz to 10 kHz, with sensitivity a factor 10 better in amplitude. Such detectors will be able to probe a range of topics in nuclear physics, astronomy, cosmology and fundamental physics, providing insights into many unsolved problems in these areas.

The Germline Stem Cell Niche Unit in Mammalian Testes

Abstract: This review addresses current understanding of the germline stem cell niche unit in mammalian testes. Spermatogenesis is a classic model of tissue-specific stem cell function relying on self-renewal and differentiation of spermatogonial stem cells (SSCs). These fate decisions are influenced by a niche microenvironment composed of a growth factor milieu that is provided by several testis somatic support cell populations. Investigations over the last two decades have identified key determinants of the SSC niche including cytokines that regulate SSC functions and support cells providing these factors, adhesion molecules that influence SSC homing, and developmental heterogeneity of the niche during postnatal aging. Emerging evidence suggests that Sertoli cells are a key support cell population influencing the formation and function of niches by secreting soluble factors and possibly orchestrating contributions of other support cells. Investigations with mice have shown that niche influence on SSC proliferation differs during early postnatal development and adulthood. Moreover, there is mounting evidence of an age-related decline in niche function, which is likely influenced by systemic factors. Defining the attributes of stem cell niches is key to developing methods to utilize these cells for regenerative medicine. The SSC population and associated niche comprise a valuable model system for study that provides fundamental knowledge about the biology of tissue-specific stem cells and their capacity to sustain homeostasis of regenerating tissue lineages. While the stem cell is essential for maintenance of all self-renewing tissues and has received considerable attention, the role of niche cells is at least as important and may prove to be more receptive to modification in regenerative medicine.

Learning Setting-Generalized Activity Models for Smart Spaces

Abstract: Smart home activity recognition systems can learn generalized models for common activities that span multiple environment settings and resident types.

Transgenerational actions of environmental compounds on reproductive disease and identification of epigenetic biomarkers of ancestral exposures.

Abstract: Environmental factors during fetal development can induce a permanent epigenetic change in the germ line (sperm) that then transmits epigenetic transgenerational inheritance of adult-onset disease in the absence of any subsequent exposure. The epigenetic transgenerational actions of various environmental compounds and relevant mixtures were investigated with the use of a pesticide mixture (permethrin and insect repellant DEET), a plastic mixture (bisphenol A and phthalates), dioxin (TCDD) and a hydrocarbon mixture (jet fuel, JP8). After transient exposure of F0 gestating female rats during the period of embryonic gonadal sex determination, the subsequent F1–F3 generations were obtained in the absence of any environmental exposure. The effects on the F1, F2 and F3 generations pubertal onset and gonadal function were assessed. The plastics, dioxin and jet fuel were found to promote early-onset female puberty transgenerationally (F3 generation). Spermatogenic cell apoptosis was affected transgenerationally. Ovarian primordial follicle pool size was significantly decreased with all treatments transgenerationally. Differential DNA methylation of the F3 generation sperm promoter epigenome was examined. Differential DNA methylation regions (DMR) were identified in the sperm of all exposure lineage males and found to be consistent within a specific exposure lineage, but different between the exposures. Several genomic features of the DMR, such as low density CpG content, were identified. Exposure-specific epigenetic biomarkers were identified that may allow for the assessment of ancestral environmental exposures associated with adult onset disease.

A mechanism of extreme growth and reliable signaling in sexually selected ornaments and weapons

Abstract: Many male animals wield ornaments or weapons of exaggerated proportions. We propose that increased cellular sensitivity to signaling through the insulin/insulin-like growth factor (IGF) pathway may be responsible for the extreme growth of these structures. We document how rhinoceros beetle horns, a sexually selected weapon, are more sensitive to nutrition and more responsive to perturbation of the insulin/IGF pathway than other body structures. We then illustrate how enhanced sensitivity to insulin/IGF signaling in a growing ornament or weapon would cause heightened condition sensitivity and increased variability in expression among individuals—critical properties of reliable signals of male quality. The possibility that reliable signaling arises as a by-product of the growth mechanism may explain why trait exaggeration has evolved so many different times in the context of sexual selection.

Chemical accuracy in ab initio thermochemistry and spectroscopy: current strategies and future challenges

Abstract: The current state of the art in wavefunction-based electronic structure methods is illustrated via discussions of the most important effects incorporated into a selection of high-accuracy methods chosen from the chemical literature. If one starts with a high-quality correlation treatment, such as provided by the CCSD(T) coupled cluster method, the leading effects include convergence of the results with respect to the 1-particle basis set, (outer)core/valence correlation, scalar relativistic effects and a number of smaller effects. For thermochemical properties such as the heat of formation, the zero-point vibrational energy also becomes important, introducing its own set of difficulties to the computational approach. Changes in the various components as the chemical systems incorporate heavier elements and as the size of the systems grows are also considered. Finally, challenges arising from the desire to extend existing methods to transition metal and heavier elements are considered.

Impacts of genetically engineered crops on pesticide use in the U.S. -- the first sixteen years

Abstract: Genetically engineered, herbicide-resistant and insect-resistant crops have been remarkable commercial successes in the United States. Few independent studies have calculated their impacts on pesticide use per hectare or overall pesticide use, or taken into account the impact of rapidly spreading glyphosate-resistant weeds. A model was developed to quantify by crop and year the impacts of six major transgenic pest-management traits on pesticide use in the U.S. over the 16-year period, 1996–2011: herbicide-resistant corn, soybeans, and cotton; Bacillus thuringiensis (Bt) corn targeting the European corn borer; Bt corn for corn rootworms; and Bt cotton for Lepidopteron insects. Herbicide-resistant crop technology has led to a 239 million kilogram (527 million pound) increase in herbicide use in the United States between 1996 and 2011, while Bt crops have reduced insecticide applications by 56 million kilograms (123 million pounds). Overall, pesticide use increased by an estimated 183 million kgs (404 million pounds), or about 7%. Contrary to often-repeated claims that today’s genetically-engineered crops have, and are reducing pesticide use, the spread of glyphosate-resistant weeds in herbicide-resistant weed management systems has brought about substantial increases in the number and volume of herbicides applied. If new genetically engineered forms of corn and soybeans tolerant of 2,4-D are approved, the volume of 2,4-D sprayed could drive herbicide usage upward by another approximate 50%. The magnitude of increases in herbicide use on herbicide-resistant hectares has dwarfed the reduction in insecticide use on Bt crops over the past 16 years, and will continue to do so for the foreseeable future.

Promotion Orientation Explains Why Future-Oriented People Exercise and Eat Healthy Evidence From the Two-Factor Consideration of Future Consequences-14 Scale

Abstract: The authors extended research linking individual differences in consideration of future consequences (CFC) with health behaviors by (a) testing whether individual differences in regulatory focus would mediate that link and (b) highlighting the value of a revised, two-factor CFC-14 scale with subscales assessing concern with future consequences (CFC-Future) and concern with immediate consequences (CFC-Immediate) proper. Exploratory and confirmatory factor analyses of the revised CFC-14 scale supported the presence of two highly reliable factors (CFC-Future and CFC-Immediate; αs from .80 to .84). Moreover, structural equation modeling showed that those high in CFC-Future engage in exercise and healthy eating because they adopt a promotion orientation. Future use of the two-factor CFC-14 scale is encouraged to shed additional light on how concern with future and concern with immediate consequences (proper) differentially impact the way people resolve a host of intertemporal dilemmas (e.g., health, financial, and environmental behavior).

Exploring value cocreation in relationships between an ERP vendor and its partners: a revelatory case study

Abstract: Contemporary business organizations are increasingly turning their attention to jointly creating value with a variety of stakeholders, such as individual customers and other business organizations. However, a review of the literature reveals that very few studies have systematically examined value cocreation within business-tobusiness (B2B) contexts. Using a revelatory case study of the relationship between an ERP vendor with a global reputation and its partners, and informed by the resource-based view of the firm and related theoretical perspectives, we develop an understanding of value cocreation in B2B alliances associated with selling, extending, and implementing packaged software, specifically ERP systems. Our study reveals that there are different mechanisms underlying value cocreation within B2B alliances, and also points to several categories of contingency factors that influence these mechanisms. In addition to providing insights about the phenomenon of cocreation itself, the study contributes to the stream of packaged software literature, where the implications of value cocreation in alliances between packaged software vendors and their partners for the client organizations have not been sufficiently explored.

Simple and Complex Activity Recognition through Smart Phones

Abstract: Due to an increased popularity of assistive healthcare technologies activity recognition has become one of the most widely studied problems in technology-driven assistive healthcare domain. Current approaches for smart-phone based activity recognition focus only on simple activities such as locomotion. In this paper, in addition to recognizing simple activities, we investigate the ability to recognize complex activities, such as cooking, cleaning, etc. through a smart phone. Features extracted from the raw inertial sensor data of the smart phone corresponding to the user's activities, are used to train and test supervised machine learning algorithms. The results from the experiments conducted on ten participants indicate that, in isolation, while simple activities can be easily recognized, the performance of the prediction models on complex activities is poor. However, the prediction model is robust enough to recognize simple activities even in the presence of complex activities.

Wireless NoC as Interconnection Backbone for Multicore Chips: Promises and Challenges

Abstract: Current commercial systems-on-chips (SoCs) designs integrate an increasingly large number of predesigned cores and their number is predicted to increase significantly in the near future. For example, molecular-scale computing promises single or even multiple order-of-magnitude improvements in device densities. The network-on-chip (NoC) is an enabling technology for integration of large numbers of embedded cores on a single die. The existing method of implementing a NoC with planar metal interconnects is deficient due to high latency and significant power consumption arising out of long multi-hop links used in data exchange. The latency, power consumption and interconnect routing problems of conventional NoCs can be addressed by replacing or augmenting multi-hop wired paths with high-bandwidth single-hop long-range wireless links. This opens up new opportunities for detailed investigations into the design of wireless NoCs (WiNoCs) with on-chip antennas, suitable transceivers and routers. Moreover, as it is an emerging technology, the on-chip wireless links also need to overcome significant challenges pertaining to reliable integration. In this paper, we present various challenges and emerging solutions regarding the design of an efficient and reliable WiNoC architecture.

Bimetallic catalysts for hydrogen generation

Abstract: Research interest in bimetallic catalysts is mainly due to their tunable chemical/physical properties by a number of parameters like composition and morphostructure. In catalysis, numerous bimetallic catalysts have been shown to exhibit unique properties which are distinct from those of their monometallic counterparts. To meet the growing energy demand while mitigating the environmental concerns, numerous endeavors have been made to seek green and sustainable energy resources, among which hydrogen has been identified as the most promising one with bimetallic catalysts playing important roles. This tutorial review intends to summarize recent progress in bimetallic catalysts for hydrogen production, specifically focusing on that of reforming technologies as well as the relevant processes like water-gas shift (WGS) and CO preferential oxidation (PROX), and emphasizing on the fundamental understanding of the nature of catalytic sites responsible for generating high purity hydrogen and minimizing carbon monoxide formation. Meanwhile, some important synthesis and characterization methods of bimetallic catalysts developed so far are also summarized.

Human drivers of national greenhouse-gas emissions

Abstract: Human stress on the environment has long been debated and different views about the human drivers of greenhouse-gas emissions have emerged. Now research synthesizes the debate by looking at empirical evidence and offers new insights on the role of human population, affluence, urbanization, trade, culture and institutions on greenhouse-gas emissions trends. Centuries of speculation about the causes of human stress on the environment is now being disciplined with empirical evidence, including analyses of differences in greenhouse-gas emissions across contemporary nation states. The cumulative results can provide useful guidance for both climate projections and for policy design. Growing human population and affluence clearly contribute to enhanced environmental stress. Evidence does not support the argument for amelioration of greenhouse-gas emissions at the highest levels of affluence. However, the role of other factors, such as urbanization, trade, culture and institutions remains ambiguous.

Genome-wide SNP detection, validation, and development of an 8K SNP array for apple.

Abstract: As high-throughput genetic marker screening systems are essential for a range of genetics studies and plant breeding applications, the International RosBREED SNP Consortium (IRSC) has utilized the Illumina Infinium® II system to develop a medium- to high-throughput SNP screening tool for genome-wide evaluation of allelic variation in apple (Malus×domestica) breeding germplasm. For genome-wide SNP discovery, 27 apple cultivars were chosen to represent worldwide breeding germplasm and re-sequenced at low coverage with the Illumina Genome Analyzer II. Following alignment of these sequences to the whole genome sequence of ‘Golden Delicious’, SNPs were identified using SoapSNP. A total of 2,113,120 SNPs were detected, corresponding to one SNP to every 288 bp of the genome. The Illumina GoldenGate® assay was then used to validate a subset of 144 SNPs with a range of characteristics, using a set of 160 apple accessions. This validation assay enabled fine-tuning of the final subset of SNPs for the Illumina Infinium® II system. The set of stringent filtering criteria developed allowed choice of a set of SNPs that not only exhibited an even distribution across the apple genome and a range of minor allele frequencies to ensure utility across germplasm, but also were located in putative exonic regions to maximize genotyping success rate. A total of 7867 apple SNPs was established for the IRSC apple 8K SNP array v1, of which 5554 were polymorphic after evaluation in segregating families and a germplasm collection. This publicly available genomics resource will provide an unprecedented resolution of SNP haplotypes, which will enable marker-locus-trait association discovery, description of the genetic architecture of quantitative traits, investigation of genetic variation (neutral and functional), and genomic selection in apple.