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Institution

Woods Hole Oceanographic Institution

NonprofitFalmouth, Massachusetts, United States
About: Woods Hole Oceanographic Institution is a nonprofit organization based out in Falmouth, Massachusetts, United States. It is known for research contribution in the topics: Population & Mantle (geology). The organization has 5685 authors who have published 18396 publications receiving 1202050 citations. The organization is also known as: WHOI.


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Journal ArticleDOI
TL;DR: The results provide further evidence that natural populations of Prochlorococcus and Synechococcus consist of multiple coexisting ecotypes, genetically closely related but physiologically distinct, which may vary in relative abundance with changing environmental conditions.
Abstract: Cultured isolates of the marine cyanobacteria Prochlorococcus and Synechococcus vary widely in their pigment compositions and growth responses to light and nutrients, yet show greater than 96% identity in their 16S ribosomal DNA (rDNA) sequences. In order to better define the genetic variation that accompanies their physiological diversity, sequences for the 16S-23S rDNA internal transcribed spacer (ITS) region were determined in 32 Prochlorococcus isolates and 25 Synechococcus isolates from around the globe. Each strain examined yielded one ITS sequence that contained two tRNA genes. Dramatic variations in the length and G+C content of the spacer were observed among the strains, particularly among Prochlorococcus strains. Secondary-structure models of the ITS were predicted in order to facilitate alignment of the sequences for phylogenetic analyses. The previously observed division of Prochlorococcus into two ecotypes (called high and low-B/A after their differences in chlorophyll content) were supported, as was the subdivision of the high-B/A ecotype into four genetically distinct clades. ITS-based phylogenies partitioned marine cluster A Synechococcus into six clades, three of which can be associated with a particular phenotype (motility, chromatic adaptation, and lack of phycourobilin). The pattern of sequence divergence within and between clades is suggestive of a mode of evolution driven by adaptive sweeps and implies that each clade represents an ecologically distinct population. Furthermore, many of the clades consist of strains isolated from disparate regions of the world's oceans, implying that they are geographically widely distributed. These results provide further evidence that natural populations of Prochlorococcus and Synechococcus consist of multiple coexisting ecotypes, genetically closely related but physiologically distinct, which may vary in relative abundance with changing environmental conditions.

516 citations

Journal ArticleDOI
TL;DR: It is demonstrated for the first time that bacterial biofilms are associated with colorectal cancers, one of the leading malignancies in the United States and abroad, and that the mucosal microbiota organization is a critical factor associated with a subset of CRC.
Abstract: Environmental factors clearly affect colorectal cancer (CRC) incidence, but the mechanisms through which these factors function are unknown. One prime candidate is an altered colonic microbiota. Here we show that the mucosal microbiota organization is a critical factor associated with a subset of CRC. We identified invasive polymicrobial bacterial biofilms (bacterial aggregates), structures previously associated with nonmalignant intestinal pathology, nearly universally (89%) on right-sided tumors (13 of 15 CRCs, 4 of 4 adenomas) but on only 12% of left-sided tumors (2 of 15 CRCs, 0 of 2 adenomas). Surprisingly, patients with biofilm-positive tumors, whether cancers or adenomas, all had biofilms on their tumor-free mucosa far distant from their tumors. Bacterial biofilms were associated with diminished colonic epithelial cell E-cadherin and enhanced epithelial cell IL-6 and Stat3 activation, as well as increased crypt epithelial cell proliferation in normal colon mucosa. High-throughput sequencing revealed no consistent bacterial genus associated with tumors, regardless of biofilm status. However, principal coordinates analysis revealed that biofilm communities on paired normal mucosa, distant from the tumor itself, cluster with tumor microbiomes as opposed to biofilm-negative normal mucosa bacterial communities also from the tumor host. Colon mucosal biofilm detection may predict increased risk for development of sporadic CRC.

516 citations

Journal ArticleDOI
TL;DR: Forecasting changes in HAB patterns over the next few decades will depend critically upon considering harmful algal blooms within the competitive context of plankton communities, and linking these insights to ecosystem, oceanographic and climate models.

513 citations

Journal ArticleDOI
TL;DR: This survey highlights a number of important practical issues that have not been emphasized in recent surveys of underwater networks, with an intended audience of researchers who are moving from radio-based terrestrial networks into underwater networks.
Abstract: Underwater sensor networks are attracting increasing interest from researchers in terrestrial radio-based sensor networks. There are important physical, technological, and economic differences between terrestrial and underwater sensor networks. In this survey, we highlight a number of important practical issues that have not been emphasized in recent surveys of underwater networks, with an intended audience of researchers who are moving from radio-based terrestrial networks into underwater networks.

513 citations

Journal ArticleDOI
TL;DR: In this article, a comparison of field and laboratory experiments highlights key features of rare earth element fractionation in major river systems is presented, showing that the dissolved pool of both rivers is highly HREE enriched with respect to the REE composition of their suspended particles.
Abstract: Laboratory experiments were carried out to determine how pH, colloids and salinity control the fractionation of rare earth elements (REEs) in river and estuarine waters. By using natural waters as the reaction media (river water from the Connecticut, Hudson and Mississippi Rivers) geochemical reactions can be studied in isolation from the large temporal and spatial variability inherent in river and estuarine chemistry. Experiments, field studies and chemical models form a consistent picture whereby REE fractionation is controlled by surface/solution reactions. The concentration and fractionation of REEs dissolved in river waters are highly pH dependent. Higher pH results in lower concentrations and more fractionated composition relative to the crustal abundance. With increasing pH the order of REE adsorption onto river particle surfaces is LREEs > MREEs > HREEs. With decreasing pH, REEs are released from surfaces in the same order. Within the dissolved ( MREEs > LREEs, is most pronounced in the solution pool, defined here as MREEs > HREEs. While the large scale removal of dissolved river REEs in estuaries is well established, the release of dissolved REEs off river particles is a less studied process. Laboratory experiments show that there is both release and fractionation of REEs when river particles are leached with seawater. The order of sea water-induced release of dissolved REE(III) (LREEs > MREEs > HREEs) from Connecticut River particles is the same as that associated with lowering the pH and the same as that associated with colloidal particles. River waters, stripped of their colloidal particles by coagulation in estuaries, have highly evolved REE composition. That is, the solution pool of REEs in river waters are strongly HREE-enriched and are fractionated to the same extent as that of Atlantic surface seawater. This strengthens the conclusions of previous studies that the evolved REE composition of sea water is coupled to chemical weathering on the continents and reactions in estuaries. Moreover, the release of dissolved Nd from river particles to sea water may help to reconcile the incompatibility between the long oceanic residence times of Nd (7100 yr) and the inter-ocean variations of the Nd isotopic composition of sea water. Using new data on dissolved and particle phases of the Amazon and Mississippi Rivers, a comparison of field and laboratory experiments highlights key features of REE fractionation in major river systems. The dissolved pool of both rivers is highly fractionated (HREE enriched) with respect to the REE composition of their suspended particles. In addition, the dissolved pool of the Mississippi River has a large negative Ce-anomaly suggesting in-situ oxidation of Ce(III). One intriguing feature is the well developed maximum in the middle REE sector of the shale normalized patterns for the dissolved pool of Amazon River water. This feature might reflect competition between surface adsorption and solution complexation with carbonate and phosphate anions.

513 citations


Authors

Showing all 5752 results

NameH-indexPapersCitations
Roberto Romero1511516108321
Jerry M. Melillo13438368894
Timothy J. Mitchison13340466418
Xiaoou Tang13255394555
Jillian F. Banfield12756260687
Matthew Jones125116196909
Rodolfo R. Llinás12038652828
Ronald D. Vale11734249020
Scott C. Doney11140659218
Alan G. Marshall107106046904
Peter K. Smith10785549174
Donald E. Canfield10529843270
Edward F. DeLong10226242794
Eric A. Davidson10128145511
Gary G. Borisy10124838195
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Performance
Metrics
No. of papers from the Institution in previous years
YearPapers
202357
2022126
2021712
2020701
2019737
2018612