Algorithmica 

About: Algorithmica is an academic journal published by Springer Science+Business Media. The journal publishes majorly in the area(s): Approximation algorithm & Time complexity. It has an ISSN identifier of 0178-4617. Over the lifetime, 2983 publications have been published receiving 100212 citations. The journal is also known as: Algorithmica (New York. Print).

On-line construction of suffix trees

Abstract: An on-line algorithm is presented for constructing the suffix tree for a given string in time linear in the length of the string. The new algorithm has the desirable property of processing the string symbol by symbol from left to right. It always has the suffix tree for the scanned part of the string ready. The method is developed as a linear-time version of a very simple algorithm for (quadratic size) suffixtries. Regardless of its quadratic worst case this latter algorithm can be a good practical method when the string is not too long. Another variation of this method is shown to give, in a natural way, the well-known algorithms for constructing suffix automata (DAWGs).

A sweepline algorithm for Voronoi diagrams

Abstract: We introduce a geometric transformation that allows Voronoi diagrams to be computed using a sweepline technique. The transformation is used to obtain simple algorithms for computing the Voronoi diagram of point sites, of line segment sites, and of weighted point sites. All algorithms haveO(n logn) worst-case running time and useO(n) space.

Approximation Algorithms for Connected Dominating Sets

Abstract: The dominating set problem in graphs asks for a minimum size subset of vertices with the following property: each vertex is required to be either in the dominating set, or adjacent to some vertex i

Retiming synchronous circuitry

Abstract: This paper describes a circuit transformation calledretiming in which registers are added at some points in a circuit and removed from others in such a way that the functional behavior of the circuit as a whole is preserved. We show that retiming can be used to transform a given synchronous circuit into a more efficient circuit under a variety of different cost criteria. We model a circuit as a graph in which the vertex setV is a collection of combinational logic elements and the edge setE is the set of interconnections, each of which may pass through zero or more registers. We give anO(?VźE?lg?V?) algorithm for determining an equivalent retimed circuit with the smallest possible clock period. We show that the problem of determining an equivalent retimed circuit with minimum state (total number of registers) is polynomial-time solvable. This result yields a polynomial-time optimal solution to the problem of pipelining combinational circuitry with minimum register cost. We also give a chacterization of optimal retiming based on an efficiently solvable mixed-integer linear-programming problem.

An O ( ND ) difference algorithm and its variations

Abstract: The problems of finding a longest common subsequence of two sequencesA andB and a shortest edit script for transformingA intoB have long been known to be dual problems. In this paper, they are shown to be equivalent to finding a shortest/longest path in an edit graph. Using this perspective, a simpleO(ND) time and space algorithm is developed whereN is the sum of the lengths ofA andB andD is the size of the minimum edit script forA andB. The algorithm performs well when differences are small (sequences are similar) and is consequently fast in typical applications. The algorithm is shown to haveO(N+D 2) expected-time performance under a basic stochastic model. A refinement of the algorithm requires onlyO(N) space, and the use of suffix trees leads to anO(N logN+D 2) time variation.