Biogeosciences 

About: Biogeosciences is an academic journal published by Copernicus Publications. The journal publishes majorly in the area(s): Phytoplankton & Soil water. It has an ISSN identifier of 1726-4170. It is also open access. Over the lifetime, 5354 publications have been published receiving 249500 citations. The journal is also known as: BG.

Towards a standardized processing of Net Ecosystem Exchange measured with eddy covariance technique: algorithms and uncertainty estimation

Abstract: . Eddy covariance technique to measure CO2, water and energy fluxes between biosphere and atmosphere is widely spread and used in various regional networks. Currently more than 250 eddy covariance sites are active around the world measuring carbon exchange at high temporal resolution for different biomes and climatic conditions. In this paper a new standardized set of corrections is introduced and the uncertainties associated with these corrections are assessed for eight different forest sites in Europe with a total of 12 yearly datasets. The uncertainties introduced on the two components GPP (Gross Primary Production) and TER (Terrestrial Ecosystem Respiration) are also discussed and a quantitative analysis presented. Through a factorial analysis we find that generally, uncertainties by different corrections are additive without interactions and that the heuristic u*-correction introduces the largest uncertainty. The results show that a standardized data processing is needed for an effective comparison across biomes and for underpinning inter-annual variability. The methodology presented in this paper has also been integrated in the European database of the eddy covariance measurements.

Estimated stocks of circumpolar permafrost carbon with quantified uncertainty ranges and identified data gaps

Abstract: Soils and other unconsolidated deposits in the northern circumpolar permafrost region store large amounts of soil organic carbon (SOC). This SOC is potentially vulnerable to remobilization following soil warming and permafrost thaw, but SOC stock estimates were poorly constrained and quantitative error estimates were lacking. This study presents revised estimates of permafrost SOC stocks, including quantitative uncertainty estimates, in the 0–3 m depth range in soils as well as for sediments deeper than 3 m in deltaic deposits of major rivers and in the Yedoma region of Siberia and Alaska. Revised estimates are based on significantly larger databases compared to previous studies. Despite this there is evidence of significant remaining regional data gaps. Estimates remain particularly poorly constrained for soils in the High Arctic region and physiographic regions with thin sedimentary overburden (mountains, highlands and plateaus) as well as for deposits below 3 m depth in deltas and the Yedoma region. While some components of the revised SOC stocks are similar in magnitude to those previously reported for this region, there are substantial differences in other components, including the fraction of perennially frozen SOC. Upscaled based on regional soil maps, estimated permafrost region SOC stocks are 217 ± 12 and 472 ± 27 Pg for the 0–0.3 and 0–1 m soil depths, respectively (±95% confidence intervals). Storage of SOC in 0–3 m of soils is estimated to 1035 ± 150 Pg. Of this, 34 ± 16 Pg C is stored in poorly developed soils of the High Arctic. Based on generalized calculations, storage of SOC below 3 m of surface soils in deltaic alluvium of major Arctic rivers is estimated as 91 ± 52 Pg. In the Yedoma region, estimated SOC stocks below 3 m depth are 181 ± 54 Pg, of which 74 ± 20 Pg is stored in intact Yedoma (late Pleistocene ice- and organic-rich silty sediments) with the remainder in refrozen thermokarst deposits. Total estimated SOC storage for the permafrost region is ∼1300 Pg with an uncertainty range of ∼1100 to 1500 Pg. Of this, ∼500 Pg is in non-permafrost soils, seasonally thawed in the active layer or in deeper taliks, while ∼800 Pg is perennially frozen. This represents a substantial ∼300 Pg lowering of the estimated perennially frozen SOC stock compared to previous estimates.

Multiple stressors of ocean ecosystems in the 21st century: projections with CMIP5 models

Abstract: Ocean ecosystems are increasingly stressed by human-induced changes of their physical, chemical and biological environment. Among these changes, warming, acidification, deoxygenation and changes in primary productivity by marine phytoplankton can be considered as four of the major stressors of open ocean ecosystems. Due to rising atmospheric CO 2 in the coming decades, these changes will be amplified. Here, we use the most recent simulations performed in the framework of the Coupled Model Intercomparison Project 5 to assess how these stressors may evolve over the course of the 21st century. The 10 Earth system models used here project similar trends in ocean warming, acidification, deoxygenation and reduced primary productivity for each of the IPCC's representative concentration pathways (RCPs) over the 21st century. For the "business-as-usual" scenario RCP8.5, the model-mean changes in the 2090s (compared to the 1990s) for sea surface temperature, sea surface pH, global O 2 content and integrated primary productivity amount to p2.73 (±0.72) °C, −0.33 (±0.003) pH unit, −3.45 (±0.44)% and −8.6 (±7.9)%, respectively. For the high mitigation scenario RCP2.6, corresponding changes are +0.71 (±0.45) °C, −0.07 (±0.001) pH unit, −1.81 (±0.31)% and −2.0 (±4.1)%, respectively, illustrating the effectiveness of extreme mitigation strategies. Although these stressors operate globally, they display distinct regional patterns and thus do not change coincidentally. Large decreases in O 2 and in pH are simulated in global ocean intermediate and mode waters, whereas large reductions in primary production are simulated in the tropics and in the North Atlantic. Although temperature and pH projections are robust across models, the same does not hold for projections of subsurface O 2 concentrations in the tropics and global and regional changes in net primary productivity. These high uncertainties in projections of primary productivity and subsurface oxygen prompt us to continue inter-model comparisons to understand these model differences, while calling for caution when using the CMIP5 models to force regional impact models.

Major role of marine vegetation on the oceanic carbon cycle

Abstract: . The carbon burial in vegetated sediments, ignored in past assessments of carbon burial in the ocean, was evaluated using a bottom-up approach derived from upscaling a compilation of published individual estimates of carbon burial in vegetated habitats (seagrass meadows, salt marshes and mangrove forests) to the global level and a top-down approach derived from considerations of global sediment balance and a compilation of the organic carbon content of vegeatated sediments. Up-scaling of individual burial estimates values yielded a total carbon burial in vegetated habitats of 111 Tmol C y-1. The total burial in unvegetated sediments was estimated to be 126 Tg C y-1, resulting in a bottom-up estimate of total burial in the ocean of about 244 Tg C y-1, two-fold higher than estimates of oceanic carbon burial that presently enter global carbon budgets. The organic carbon concentrations in vegetated marine sediments exceeds by 2 to 10-fold those in shelf/deltaic sediments. Top-down recalculation of ocean sediment budgets to account for these, previously neglected, organic-rich sediments, yields a top-down carbon burial estimate of 216 Tg C y-1, with vegetated coastal habitats contributing about 50%. Even though vegetated carbon burial contributes about half of the total carbon burial in the ocean, burial represents a small fraction of the net production of these ecosystems, estimated at about 3388 Tg C y-1, suggesting that bulk of the benthic net ecosystem production must support excess respiration in other compartments, such as unvegetated sediments and the coastal pelagic compartment. The total excess organic carbon available to be exported to the ocean is estimated at between 1126 to 3534 Tg C y-1, the bulk of which must be respired in the open ocean. Widespread loss of vegetated coastal habitats must have reduced carbon burial in the ocean by about 30 Tg C y-1, identifying the destruction of these ecosystems as an important loss of CO2 sink capacity in the biosphere.

Biomass burning emissions estimated with a global fire assimilation system based on observed fire radiative power

Abstract: . The Global Fire Assimilation System (GFASv1.0) calculates biomass burning emissions by assimilating Fire Radiative Power (FRP) observations from the MODIS instruments onboard the Terra and Aqua satellites. It corrects for gaps in the observations, which are mostly due to cloud cover, and filters spurious FRP observations of volcanoes, gas flares and other industrial activity. The combustion rate is subsequently calculated with land cover-specific conversion factors. Emission factors for 40 gas-phase and aerosol trace species have been compiled from a literature survey. The corresponding daily emissions have been calculated on a global 0.5° × 0.5° grid from 2003 to the present. General consistency with the Global Fire Emission Database version 3.1 (GFED3.1) within its accuracy is achieved while maintaining the advantages of an FRP-based approach: GFASv1.0 makes use of the quantitative information on the combustion rate that is contained in the FRP observations, and it detects fires in real time at high spatial and temporal resolution. GFASv1.0 indicates omission errors in GFED3.1 due to undetected small fires. It also exhibits slightly longer fire seasons in South America and North Africa and a slightly shorter fire season in Southeast Asia. GFASv1.0 has already been used for atmospheric reactive gas simulations in an independent study, which found good agreement with atmospheric observations. We have performed simulations of the atmospheric aerosol distribution with and without the assimilation of MODIS aerosol optical depth (AOD). They indicate that the emissions of particulate matter need to be boosted by a factor of 2–4 to reproduce the global distribution of organic matter and black carbon. This discrepancy is also evident in the comparison of previously published top-down and bottom-up estimates. For the time being, a global enhancement of the particulate matter emissions by 3.4 is recommended. Validation with independent AOD and PM10 observations recorded during the Russian fires in summer 2010 show that the global Monitoring Atmospheric Composition and Change (MACC) aerosol model with GFASv1.0 aerosol emissions captures the smoke plume evolution well when organic matter and black carbon are enhanced by the recommended factor. In conjunction with the assimilation of MODIS AOD, the use of GFASv1.0 with enhanced emission factors quantitatively improves the forecast of the aerosol load near the surface sufficiently to allow air quality warnings with a lead time of up to four days.