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Showing papers in "Biological Journal of The Linnean Society in 2020"


Journal ArticleDOI
TL;DR: It is found that intracortical remodelling began early in ontogeny and continued throughout their lives, becoming more extensive throughout the compacta with age, albeit more restricted to the perimedullary region in the femora.
Abstract: Given that the biology of the recently extinct aepyornithids is poorly understood, we undertook a histological study of 29 skeletal elements of adult and juvenile specimens of Aepyornithidae, i.e. Aepyornis maximus, Aepyornis hildebrandti and Vorombe titan, in addition to a group of taxonomically unidentifiable juvenile Aepyornithiformes. Comparative analysis of the histology of the different skeletal elements showed that although the femur retained a good record of growth during early ontogeny, the tibiotarsus provided the best record of growth. Our data showed that, like other insular birds and their extant relative, the kiwi, Aepyornithidae experienced protracted growth. We also found that intracortical remodelling began early in ontogeny and continued throughout their lives, becoming more extensive throughout the compacta with age, albeit more restricted to the perimedullary region in the femora. We also deduced that the different skeletal elements experienced variable amounts of intracortical remodelling, which was most likely to be related to biomechanical constraints, size of the element and ontogenetic age. Additionally, we documented the occurrence of an unusual endosteal tissue within the large perimedullary erosional spaces of a femur of A. maximus. Overall, our study provided a lot of new information about the life history of these giant, recently extinct ratites.

22 citations


Journal ArticleDOI
TL;DR: It is shown that T. macedonicus accumulated nuclear DNA population structure in an area predicted to have been climatically stable during the Pleistocene, with four nuclear DNA groups in the western part of the species range, which shows little agreement with that of mtDNA structuring.
Abstract: Integration of multilocus data and species distribution modelling into phylogeography allows mitochondrial DNA (mtDNA)-based scenarios to be fine-tuned. We address the question of whether extensive mtDNA substructuring in the crested newt Triturus macedonicus from the Balkan Peninsula is matched in the nuclear genome. We determine the intraspecific population structure based on 52 nuclear DNA markers and project a species distribution model on climate layers for the Last Glacial Maximum. We show that T. macedonicus accumulated nuclear DNA population structure in an area predicted to have been climatically stable during the Pleistocene, with four nuclear DNA groups in the western part of the species range. The distribution of these nuclear DNA groups shows little agreement with that of mtDNA structuring, which shows three highly distinct species-specific clades and a fourth one introgressed from another crested newt species. This cytonuclear discordance conveys that historical biogeographical scenarios based on mtDNA exclusively should be interpreted with caution. Our findings further highlight the important role the Balkan Peninsula has played in the evolution and preservation of European biodiversity.

19 citations


Journal ArticleDOI
TL;DR: It is found that amplexus type exhibits a high phylogenetic signal and that am Plexus type does not evolve in association with sexual size dimorphism, and the implications for the diversity of amplexu types across anurans are discussed.
Abstract: The evolution and diversification of animal reproductive modes have been pivotal questions in behavioral ecology. Amphibians present the highest diversity of reproductive modes among vertebrates, involving various behavioral, physiological and morphological traits. One of such features is the amplexus, the clasp or embrace of males on females during reproduction, which is almost universal to anurans. Hypotheses about the origin amplexus are limited and have not been thoroughly tested, nor had they taken into account evolutionary relationships in most comparative studies. However, these considerations are crucial to understand the evolution of reproductive modes. Here, using an evolutionary framework, we reconstruct the ancestral state of amplexus in 686 anuran species; investigate whether the amplexus type is a conserved trait; and test whether sexual size dimorphism (SSD) could have influenced the amplexus type or male performance while clasping females. Overall, we found evidence of at least 35 evolutionary transitions in amplexus type across anurans. We also found that amplexus exhibits a high phylogenetic signal (it is conserved across Anura evolutionary history) and the amplexus type does not evolve in association with SSD. We discuss the implications of our findings on the diversity of amplexus types across anurans.

17 citations


Journal ArticleDOI
TL;DR: It is demonstrated that ecomorphological patterns across macrohabitats can be disrupted by competition-driven microhabitat partitioning and that specific morphological responses to similar ecological pressures can vary between lineages.
Abstract: Ecologically functional traits are the product of several, at times opposing, selective forces. Thus, ecomorphological patterns can be disrupted locally by biotic interactions, such as competition, and may not be consistent across lineages. Here, we studied the evolution of claws and toepads in relationship to macrohabitat (vegetation), use of structural microhabitat (perch height) and congeneric competition for two distantly related Lesser Antillean anole clades: the Anolis bimaculatus and Anolis roquet series. We collected univariate and geometric morphometric data from 254 individuals across 22 species to test the hypotheses that functional morphology should covary with both vegetation and perch height and that the presence of a competitor may disrupt such covariation. Our data showed predictable associations between morphology and macrohabitat on single-species islands but not when a congeneric competitor was present. The outcomes of competition differed between series, however. In the A. bimaculatus series, species with a sympatric congener diverged in claw and toepad traits consistent with functional predictions, whereas A. roquet series anoles showed either no association between habitat and morphology or the opposite pattern. Our results demonstrated that ecomorphological patterns across macrohabitats can be disrupted by competition-driven microhabitat partitioning and that specific morphological responses to similar ecological pressures can vary between lineages.

17 citations


Journal ArticleDOI
TL;DR: It is shown that the humeri of most forward-burrowing frogs are morphologically distinct from those of non-forward-burrowers, including features such as a curved and thick diaphysis, the presence of a pronounced ventral crest, and relatively large epicondyles and humeral head.
Abstract: Burrowing is one of the many locomotor modes of frogs (order Anura) and is found within many clades. Burrowing is generally categorized into two groups: forward-burrowing and backward-burrowing. While forward-burrowing is more rare than backward-burrowing, we show that it has evolved independently at least eight times across anurans and is correlated with distinct features of the external and internal anatomy. The shape of the humerus is especially important for forward-burrowing, as many species use their forelimbs for digging. Using X-ray computed tomography data, we characterize shape variation in the humerus, including three-dimensional (3D) morphometrics, assess the morphology of muscles related to this variation in the humerus, and discuss the mechanical and evolutionary consequences of our results. We show that the humeri of most forward-burrowing frogs are morphologically distinct from those of non-forward-burrowers, including features such as a curved and thick diaphysis, the presence of a pronounced ventral crest, and relatively large epicondyles and humeral head. Our findings also suggest that pectoral muscle anatomy differs substantially among burrowing modes in frogs. This work provides a framework for predicting locomotor modes in taxa for which the natural history is poorly known as well as extinct taxa.

17 citations


Journal ArticleDOI
TL;DR: This work presents a new strategy based on a high investment in reward production and thus attraction, in the heterantherous Pterolepis glomerata to overcome short flower longevity and maintain reproductive success and demonstrates that the division of labour might have different outcomes.
Abstract: Pollen-flowers with heteromorphic stamens have been shown to promote an intrafloral division of labour as a solution to fitness costs arising from pollen consumption by bees, known as the pollen dilemma. Usually, the division is based on morphological differences in anther and pollen traits that correlate with stamen function: pollinating anthers are larger and contain more and higher-quality pollen grains than feeding anthers. Here, we present a new strategy based on a high investment in reward production and thus attraction, in the heterantherous Pterolepis glomerata, to overcome short flower longevity and maintain reproductive success. In P. glomerata small feeding anthers not only produced more pollen grains and more grains with cytoplasmic content, but also released more pollen than pollinating anthers after a single visit. This pattern was consistent until the end of floral anthesis, showing the existence of pollen-dosing mechanisms. Bees equally visited flowers with yellow feeding anthers and pollinating anthers with yellow connective appendages, indicating a visual similarity, as predicted by bee vision modelling. Our results demonstrate that the division of labour might have different outcomes. Instead of the classical expectation of more investment in reproductive pollen in pollinating stamens, P. glomerata invested more in attraction and reward in feeding stamens.

17 citations


Journal ArticleDOI
TL;DR: A population genetic analysis of an endangered Malagasy shrub of the Central Plateau found a highly contrasting nuclear and plastid genetic structure, suggesting that pollen-mediated gene flow allows panmixia, while seed-based dispersal may rarely exceed tens of metres.
Abstract: Debates regarding the origin of tropical savannas have attempted to disentangle the role of human, biotic and abiotic factors. Understanding the origins of savanna remains essential to identifying processes that gave rise to habitat mosaics, particularly those found in the Central Plateau of Madagascar. Documenting the evolutionary history and demography of native trees occurring in open habitats may reveal footprints left by past and recent environmental changes. We conducted a population genetic analysis of an endangered Malagasy shrub (Noronhia lowryi, Oleaceae) of the Central Plateau. Seventy-seven individuals were sampled from three sites and genotyped at 14 nuclear and 24 chloroplast microsatellites. We found a highly contrasting nuclear and plastid genetic structure, suggesting that pollen-mediated gene flow allows panmixia, while seed-based dispersal may rarely exceed tens of metres. From a phylogeny based on full plastomes, we dated the surprisingly old crown age of maternal lineages back to ~6.2 Mya, perhaps co-occurring with the global expansion of savanna. In contrast, recent demographic history inferred from nuclear data shows a bottleneck signature ~350 generations ago, probably reflecting an environmental shift during the Late Pleistocene or the Holocene. Ancient in situ adaptation and recent demographic collapse of an endangered woody plant highlight the unique value and vulnerability of the Malagasy savannas.

16 citations


Journal ArticleDOI
TL;DR: This work presents a meta-anatomy of evolution from the perspective of a probabilistic model, which states that the more accurate model indicates the more likely scenario is that of a “spatially aggregating Event”.
Abstract: EVAN T. SAITTA1*, MAXIMILIAN T. STOCKDALE2, NICHOLAS R. LONGRICH3, VINCENT BONHOMME4, MICHAEL J. BENTON5, INNES C. CUTHILL6, and PETER J. MAKOVICKY7 1Life Sciences Section, Integrative Research Center, Field Museum of Natural History, Chicago, IL 60605, USA 2School of Geographical Sciences, University of Bristol, Bristol, BS8 1RL, UK 3Department of Biology and Biochemistry and Milner Centre for Evolution, University of Bath, Bath, BA2 7AY, UK 4Institut des sciences de l’évolution, Université de Montpellier, Montpellier 5, F-34095, France 5School of Earth Sciences, University of Bristol, Bristol, BS8 1RJ, UK 6School of Biological Sciences, University of Bristol, Bristol, BS8 1TH, UK 7Department of Earth and Environmental Sciences, University of Minnesota, Minneapolis, MN 55455, USA

16 citations


Journal ArticleDOI
TL;DR: Analysis of quantitative bone palaeohistology and phylogenetic eigenvector maps suggest that the seven species of Notosuchia sampled in this study were ectotherms, and parsimony suggests that endothermy may have been lost at the node Metasuchia (Notosuchian–Neosuchio) by the Early Jurassic.
Abstract: Most Notosuchia were active terrestrial predators. A few were semi-aquatic, or were insectivorous, omnivorous or herbivorous. A question relative to their thermometabolism remains to be answered: were Notosuchia warm-blooded? Here we use quantitative bone palaeohistology to answer this question. Two variables were used as proxies to infer thermometabolism: resting metabolic rate and red blood cell dimensions. Resting metabolic rate was inferred using relative primary osteon area and osteocyte size, shape and density. Blood cell dimensions were inferred using harmonic mean canal diameter and minimum canal diameter. All inferences were performed using phylogenetic eigenvector maps. Both sets of analyses suggest that the seven species of Notosuchia sampled in this study were ectotherms. Given that extant Neosuchia (their sister group) are also ectotherms, and that archosaurs were primitively endotherms, parsimony suggests that endothermy may have been lost at the node Metasuchia (Notosuchia–Neosuchia) by the Early Jurassic. Semi-aquatic taxa such as Pepesuchus may have had thermoregulatory strategies similar to those of recent crocodylians, whereas the terrestrial taxa (Araripesuchus, Armadillosuchus, Iberosuchus, Mariliasuchus, Stratiotosuchus) may have been thermoregulators similar to active predatory varanids. Thermal inertia may have contributed to maintaining a stable temperature in large notosuchians such as Baurusuchus.

15 citations


Journal ArticleDOI
TL;DR: Larger specimens were characterized by lower Ot.Dn, indicating that giant murines from Timor might have had a relatively slow pace of bone metabolic activity, consistent with predictions made by the island rule.
Abstract: Skeletal growth rates reconstructed from bone histology in extinct insular hippopotamids, elephants, bovids and sauropods have been used to infer dwarfism as a response to island conditions. Limited published records of osteocyte lacunae densities (Ot.Dn), a proxy for living osteocyte proliferation, have suggested a slower rate of bone metabolism in giant mammals. Here, we test whether insularity might have affected bone metabolism in a series of small to giant murine rodents from Timor. Ten adult femora were selected from a fossil assemblage dated to the Late Quaternary (~5000–18 000 years old). Femur morphometric data were used in computing phylogenetically informed body mass regressions, although the phylogenetic signal was very low (Pagel’s λ = 0.03). Estimates of body weight calculated from these femora ranged from 75 to 1188 g. Osteocyte lacunae densities from histological sections of the midshaft femur were evaluated against bone size and estimated body weight. Statistically significant (P < 0.05) and strongly negative relationships between Ot.Dn, femur size and estimated weight were found. Larger specimens were characterized by lower Ot.Dn, indicating that giant murines from Timor might have had a relatively slow pace of bone metabolic activity, consistent with predictions made by the island rule.

15 citations


Journal ArticleDOI
TL;DR: Although reproductive behaviours exhibited by Sclerodermus females can be cooperative, they are unlikely to be exhibited without reference to kinship or to the risks involved in attempting to suppress and share large and dangerous hosts.
Abstract: Sclerodermus brevicornis is a parasitoid that exhibits cooperative multi-foundress brood production. Prior work showed that the time lag to paralysis of small-sized hosts is shorter when co-foundress relatedness is higher and predicted that the greater risks and greater benefits of attacking larger hosts would combine with co-foundress relatedness to determine the limits to the size of a host that a female is selected to attack as a public good. It was also predicted that the time to host attack would be affected by an interaction between host size and relatedness. Here, we show empirically that both host size and kinship affect S. brevicornis reproduction and that they interact to influence the timing of host attack. We also find effects of co-foundress relatedness after hosts have been suppressed successfully. A public goods model using parameters estimated for S. brevicornis again suggests that selection for individual foundresses to attack and, if successful, to share hosts will be dependent on both the size of the host and the relatedness of the foundresses to any co-foundresses present. Females will not be selected to bear the individual cost of a public good when hosts are large and dangerous or when their relatedness to the co-foundress is low. We conclude that although reproductive behaviours exhibited by Sclerodermus females can be cooperative, they are unlikely to be exhibited without reference to kinship or to the risks involved in attempting to suppress and share large and dangerous hosts.

Journal ArticleDOI
TL;DR: A lack of ontogenetic shifts in habitat use allows extreme philopatry in E. annulatus, thereby reducing gene flow among populations and, potentially, delaying recolonization after local extirpation events.
Abstract: In many populations of terrestrial snakes, the phenotype of an individual (e.g. body size, sex, colour) affects its habitat use. One cause for that link is gape limitation, which can result in larger snakes eating prey that are found in different habitats. A second factor involves thermoregulatory opportunities, whereby individuals select habitats based upon thermal conditions. These ideas predict minimal intraspecific variation in habitat use in a species that eats small prey and lives in a thermally uniform habitat, such as the sea snake Emydocephalus annulatus, which feeds on tiny fish eggs and lives in inshore coral reefs. To test that prediction, we gathered data on water depths and substrate attributes for 1475 sightings of 128 free-ranging E. annulatus in a bay near Noumea, New Caledonia. Habitat selection varied among individuals, but with a preference for coral-dominated substrates. The body size and reproductive state of a snake affected its detectability in deep water, but overall habitat use was not linked to snake body size, colour morph, sex or pregnancy. A lack of ontogenetic shifts in habitat use allows extreme philopatry in E. annulatus, thereby reducing gene flow among populations and, potentially, delaying recolonization after local extirpation events.

Journal ArticleDOI
TL;DR: It is found that urban lizards undergo a shift in claw shape in the same direction but varying magnitude across species, which supports the intriguing possibility that urban environments may lead to predictable convergent adaptive change.
Abstract: Human activity drastically transforms landscapes, generating novel habitats to which species must adaptively respond. Consequently, urbanization is increasingly recognized as a driver of phenotypic change. The structural environment of urban habitats presents a replicated natural experiment to examine trait–environment relationships and phenotypic variation related to locomotion. We use geometric morphometrics to examine claw morphology of five species of Anolis lizards in urban and forest habitats. We find that urban lizards undergo a shift in claw shape in the same direction but varying magnitude across species. Urban claws are overall taller, less curved, less pointed and shorter in length than those of forest lizards. These differences may enable more effective attachment or reduce interference with toepad function on smooth anthropogenic substrates. We also find an increase in shape disparity, a measurement of variation, in urban populations, suggesting relaxed selection or niche expansion rather than directional selection. This study expands our understanding of the relatively understudied trait of claw morphology and adds to a growing number of studies demonstrating phenotypic changes in urban lizards. The consistency in the direction of the shape changes we observed supports the intriguing possibility that urban environments may lead to predictable convergent adaptive change.

Journal ArticleDOI
TL;DR: This paper presents a meta-anatomical analysis of the decline in Honey Buzzard populations in the United States over the past 50 years and some of the mechanisms leading to decline can be identified.
Abstract: 1Department of Biology, Pennsylvania State University, State College, PA, USA 2Department of Environmental Sciences, University of Toledo, Toledo, OH, USA 3Cleveland Museum of Natural History, Cleveland, OH, USA 4Department of Biology, University of Kentucky, Lexington, KY, USA 5US Geological Survey, Minnesota Cooperative Fish and Wildlife Research Unit, University of Minnesota, St Paul, MN, USA 6Cornell Lab of Ornithology, Cornell University, Ithaca, NY, USA

Journal ArticleDOI
TL;DR: It is predicted that host size and relatedness will interact to affect the timing of host paralysis and it is found that the time taken to paralyse standard-sized hosts is shorter when co-foundress number and/or relatedness is higher.
Abstract: Explanations for the highest levels of sociality typically invoke the concept of inclusive fitness. Sclerodermus, a genus of parasitoid hymenopterans, is quasi-social, exhibiting cooperative brood care without generational overlap or apparent division of labour. Foundress females successfully co-exploit hosts that are too large to suppress when acting alone and the direct fitness benefits of collective action may explain their cooperation, irrespective of kinship. However, cooperation in animal societies is seldom free of conflicts of interest between social partners, especially when their relatedness, and thus their degree of shared evolutionary interests, is low. We screened components of the life-history of Sclerodermus brevicornis for effects of varying co-foundress number and relatedness on cooperative reproduction. We found that the time taken to paralyse standard-sized hosts is shorter when co-foundress number and/or relatedness is higher. This suggests that, while females must access a paralysed host in order to reproduce, individuals are reluctant to take the risk of host attack unless the benefits will be shared with their kin. We used Hamilton’s rule and prior data from studies that experimentally varied the sizes of hosts presented to congeners to explore how the greater risks and greater benefits of attacking larger hosts could combine with relatedness to determine the sizes of hosts that individuals are selected to attack as a public good. From this, we predict that host size and relatedness will interact to affect the timing of host paralysis; we test this prediction in the accompanying study.

Journal ArticleDOI
TL;DR: This paper presents a meta-analyses of the response of the immune system to the presence of carbon dioxide in the air of Mexico over a period of 40 years.
Abstract: 1Department of Ecology and Evolutionary Biology, University of Toronto, 25 Wilcocks Street, Toronto, Ontario, Canada M5S 3B2 2Department of Biology, Middle Tennessee State University, Murfreesboro, TN, USA, 37132 3Department of Biology, Stephen F. Austin State University, Nacogdoches, TX 75964, USA 4Department of Wildlife and Fisheries Sciences, Texas A&M University, 2258 TAMU, College Station, TX 77843-2258, USA 5Department of Natural Resources Management, Texas Tech University, Lubbock, TX 79409-2125, USA 6Departamento de Conservación de la Biodiversidad, CONACYT El Colegio de la Frontera Sur (ECOSUR), San Cristóbal de Las Casas, Chiapas, 29290, Mexico 7Centro de Investigación de Ciencias Ambientales, Universidad Autónoma del Carmen, Ciudad del Carmen, 24155, Campeche, Mexico 8Biology Department, Winona State University, Winona, MN 55987, USA 9Department of Natural History, Royal Ontario Museum, 100 Queen’s Park, Toronto, Ontario, Canada M5S 2C6

Journal ArticleDOI
TL;DR: The results showed that Pila dispersed into India as well as other parts of tropical Asia from Africa after both India and Africa collided with Eurasia, corroborate increasing evidence that much of the current Indian assemblage of biota actually dispersed ‘into-India’ after it collided with Asia.
Abstract: The biota of the Indian subcontinent was assembled through multiple associations with various landmasses during a period spanning the Late Cretaceous to the present. It consists of Gondwanan elements that subsequently dispersed ‘out-of-India’ and biota that dispersed ‘into-India’ after the subcontinent collided with Asia. However, the relative contribution of these connections to the current biotic assembly of the subcontinent has been under-explored. Our aim here was to understand the relative importance of these various routes of biotic assembly in India by studying the historical biogeography of the tropical Old World freshwater snail genus Pila. We reconstructed a near-complete phylogeny, based on nuclear and mitochondrial markers, of Ampullariidae including all the described Pila species from India and Ampullariids worldwide. Thereafter, molecular dating and ancestral range estimation analyses were carried out to ascertain the time frame and route of colonization of India by Pila. The results showed that Pila dispersed into India as well as other parts of tropical Asia from Africa after both India and Africa collided with Eurasia. Furthermore, multiple dispersals took place between Southeast Asia and India. These findings corroborate increasing evidence that much of the current Indian assemblage of biota actually dispersed ‘into-India’ after it collided with Asia.

Journal ArticleDOI
TL;DR: Traditional linear morphometrics is used to describe a weapon trimorphism in the endemic New Zealand harvestman, Forsteropsalis pureoraTaylor, 2013 and it is shown that alpha males are different in weapon shape, whereas beta and gamma males have similarweapon shape, but vary in their body size and chelicera length.
Abstract: In many species, competition for mates has led to exaggerated male sexually-selected traits. Sexually-selected male weapons are used in male-male combat and include structures like horns, antlers and enlarged teeth. Weapons often vary intraspecifically in size, resulting in either a continuum of weapon sizes or in discrete male polymorphisms. More rarely, complex weapon polymorphisms can also include variation in weapon shape; however, these are difficult to quantify. Here we first use traditional linear morphometrics to describe a weapon trimorphism in the endemic New Zealand harvestman, Forsteropsalis pureoraTaylor, 2013. We identified three male morphs: a small-bodied gamma male with reduced chelicera, a large-bodied beta male with long, slender chelicerae, and a large-bodied alpha male with shorter, but very broad, robust chelicerae. Chelicera length alone failed to fully capture the variation in weapon investment. Using geometric morphometrics, we show that alpha males are different in weapon shape, whereas beta and gamma males have similar weapon shape, but vary in their body size and chelicera length. Additionally, we describe how the chelicerae function during male-male combat from observations of contests. This work demonstrates how combining linear and geometric morphometrics can help to elucidate complex polymorphism.

Journal ArticleDOI
TL;DR: A significant correlation between the evolution of hyperossification and aposematism with increasing body size is found in northern and southern Atlantic Forest lineages.
Abstract: Evolutionary changes towards a miniaturized body plan may directly affect other important phenotypic traits related to the physiology, behaviour and ecology of organisms. The frog genus Brachycephalus is an outstanding example of a radiation of miniaturized species endemic to the Brazilian Atlantic Forest. We inferred ancestral states and historical changes in body size, body colour and hyperossification to test hypotheses about diversification and selective environmental mechanisms leading to the evolution of these specialized traits. The ancestral distribution was associated with high-elevation regions in the northern Serra do Mar mountain range, and diversification in the genus was coincident with important geological and climatic events during the history of the Atlantic Forest. The dynamic historical changes provided an opportunity for multiple lowland lineages and for speciation via dispersal and vicariance in multiple invasions of the highlands. The ancestral Brachycephalus was reconstructed as miniaturized and dull coloured, without hyperossification in the skin, skull or postcranial skeleton. A parallel evolution of phenotypic traits has occurred in northern and southern Atlantic Forest lineages, beginning in the Miocene. Shifts in body size are not related to elevation range or latitude. However, we found a significant correlation between the evolution of hyperossification and aposematism with increasing body size.

Journal ArticleDOI
TL;DR: The results suggest that numerous cranial and mandibular traits associated with domestication still exist in feral specimens, corroborating that domestication-induced changes in the shape of morphological elements are broadly maintained in feral populations.
Abstract: Feralization is the process by which domestic animals return to the wild and produce self-sustaining populations. It is often considered as a model in understanding the permanence of morphological changes associated with domestication; however, it is still unclear how much the release of anthropogenic selective pressures affects domestic traits. Here, we assessed the influence of feralization on the domestic morphological traits acquired through selective breeding using craniomandibular differences in shape and size between populations of feral pigs, wild boar and domestic pigs, using landmark-based geometric morphometrics. Our results suggest that numerous cranial and mandibular traits associated with domestication still exist in feral specimens, corroborating that domestication-induced changes in the shape of morphological elements are broadly maintained in feral populations. This is not the case for size variations, however, as the cranium is significantly smaller in feral pigs than in domesticated breeds, which could be due to the selective pressures associated with founding events. Our exploratory study, therefore, underlines the complexity of feral population history, the intricate influence of variations in genetic diversity, and novel selection pressures in the morphology of these groups. Future studies will need to expand the sample to take into account the diversity of morphotypes.

Journal ArticleDOI
TL;DR: The Viperidae offer a powerful model group to test eco-evolutionary processes that lead to disruptive and cryptic ornaments and character phylogenetic reconstruction analyses suggested an ancestral state for blotchy ornamentation, with multiple independent evolutions of the other patterns.
Abstract: Multiple hypotheses have been proposed to explain the variation of dorsal patterns observed in snakes, but no studies yet have tested them over broad taxonomic and geographical scales. The Viperidae offer a powerful model group to test eco-evolutionary processes that lead to disruptive and cryptic ornaments. We developed a database reporting dorsal ornamentation, ecological habitus, habitat features and climatic parameters for 257 out of 341 recognized species. Three patterns of dorsal ornamentation were considered: “zig-zag”, “blotchy” and “uniform” patterns. Phylogenetic comparative analyses were based on 11 mitochondrial and nuclear genes. Forty-eight species presented a zig-zag pattern type, 224 a blotchy pattern type and 32 a uniform pattern type. All the patterns showed a strong phylogenetic signal. Character phylogenetic reconstruction analyses suggested an ancestral state for blotchy ornamentation, with multiple independent evolutions of the other patterns. The blotchy pattern was more frequent in terrestrial species living in warm climates and sandy habitats, supporting the hypothesis of a disruptive function. The zig-zag pattern evolved independently in several isolated taxa, particularly in species living in cold climates and in dense vegetation or water-related habitats, supporting the hypothesis of disruptive and aposematic functions. Uniform coloration was particularly frequent in arboreal species, supporting the hypothesis of a cryptic function.

Journal ArticleDOI
TL;DR: The Mediterranean trout should be considered as native also along the Italian side of the south-western Alps and the allochthonous hypothesis of a man-mediated French origin of the Mediterranean trout inhabiting the Po tributaries in the Italian site was rejected.
Abstract: The role of the south-western Alps as a corridor for Mediterranean trout (Salmo trutta complex Linnaeus, 1758) was evaluated in order to understand the influence of the last glacial events in shaping the spatial distribution of the genetic diversity of this salmonid. For this, the allochthonous hypothesis of a man-mediated French origin (19th century) of the Mediterranean trout inhabiting the Po tributaries in the Italian side of the south-western Alps was tested. A total of 412 individuals were analysed at the mitochondrial control region. The phylogenetic classification was carried out by using a Median-Joining Network analysis. Mismatch pair-wise analysis, molecular dating and Kernel density distribution analysis of the main mitochondrial lineages were evaluated to compare past demographic dynamics with the current spatial distribution of genetic diversity. The main outcomes resulted strongly in agreement with a biogeographic scenario where the south-western Alps acted as a unidirectional corridor that permitted the colonization of the upper Durance (Rhone River basin) by trout from the Po River basin. Therefore, the Mediterranean trout should be considered as native also along the Italian side of the south-western Alps and the allochthonous hypothesis should be rejected.

Journal ArticleDOI
TL;DR: 1UMR 7179 C.R.N.S/M.H.N., Département Adaptations du Vivant, Bâtiment d’Anatomie Comparée, 55 rue Buffon, 75005, Paris, France 2Institut de Systématique, Evolution, Biodiversité
Abstract: 1UMR 7179 C.N.R.S/M.N.H.N., Département Adaptations du Vivant, Bâtiment d’Anatomie Comparée, 55 rue Buffon, 75005, Paris, France 2Institut de Systématique, Evolution, Biodiversité, (UMR 7205 Muséum national d’Histoire naturelle, CNRS UPMC EPHE, Sorbonne Universités), CP30, 25 rue Cuvier 75005, Paris, France 3Centre for Invasion Biology, Department of Botany & Zoology, Stellenbosch University, Private Bag X1, 7602 Matieland, Stellenbosch, South Africa 4Deparment of Biology, University of Antwerp, Universiteitsplein 1, B2610 Antwerpen, Belgium 5Department of Biomedical Sciences, Ohio University, Cleveland Campus, SPS-334C, Cleveland, 45701 Ohio, USA 6Department of Biology, Evolutionary Morphology of Vertebrates, Ghent University, K.L. Ledeganckstraat 35, 9000 Ghent, Belgium

Journal ArticleDOI
TL;DR: Phenotypic and genotypic variability in Astyanax cave fish eyes does not derive from genetic introgression by the surface form, but from regressive mutations not being eliminated by selection, which matches well with the principles of Kimura’s neutral theory of molecular evolution.
Abstract: The forces driving regression of biologically functionless traits remain disputed. There is ongoing debate regarding whether selection, as opposed to disuse and neutral mutations, is involved in this process. Cave species are of particular relevance for study in this regard because in continuous darkness all traits that depend on information from light, such as eyes, dark pigmentation and certain behaviours, abruptly lose their function. Recently, strong selection driving reduction has again been proposed, which relied on modelling analyses based on assumptions such as immigration of surface alleles into the cave forms or no fitness difference existing between Astyanax surface and cave fish. The validity of these assumptions, often applied to reject neutral processes in functionless traits, is questioned in this review. Morphological variation in a trait resulting from genetic variability is typical of biologically functionless traits and is particularly notable in phylogenetically young cave species. It is the most evident indicator of loss of selection, which normally enforces uniformity to guarantee optimal functionality. Phenotypic and genotypic variability in Astyanax cave fish eyes does not derive from genetic introgression by the surface form, but from regressive mutations not being eliminated by selection. This matches well with the principles of Kimura’s neutral theory of molecular evolution.

Journal ArticleDOI
TL;DR: This new phylogenomic backbone represents a useful framework for future endeavours in tiger beetle systematics and serves as a starting point for the development of less costly target capture toolkits to expand the taxonomic breadth of the future tiger beetle tree of life.
Abstract: Phylogenomics is progressing rapidly, allowing large strides forward into our understanding of the tree of life. In this study, we generated transcriptomes from ethanol-preserved specimens of 13 tiger beetle species (Coleoptera: Cicindelinae) and one Scaritinae outgroup. From these 14 transcriptomes and seven publicly available transcriptomes, we recovered an average of 2538 loci for phylogenetic analysis. We constructed an evolutionary tree of tiger beetles to examine deep-level relationships and examined the extent to which the composition of the dataset, missing data, gene tree inconsistency and codon position saturation impacted phylogenetic accuracy. Ethanol-preserved specimens yielded similar numbers of loci to specimens originally preserved in costly reagents, showcasing more flexibility in transcriptomics than anticipated. The number of loci and gene tree inconsistency had less impact on downstream results than third codon position saturation and missing data. Our results recovered tiger beetles as sister to Carabidae with strong support, confirming their taxonomic status as an independent family within Adephaga. Within tiger beetles, phylogenetic relationships were robust across all nodes. This new phylogenomic backbone represents a useful framework for future endeavours in tiger beetle systematics and serves as a starting point for the development of less costly target capture toolkits to expand the taxonomic breadth of the future tiger beetle tree of life.

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TL;DR: A revision of each transition zone will determine whether they are artificial areas, areas within their own right or potentially geographically overlapping temporally disjunct regions.
Abstract: Transition zones are problematic in biogeographical classification as they represent artificial biotic areas. A review of transition zones into existing biogeographical classifications shows conflicting area taxonomies. While many authors consider transition zones as overlap zones or areas of biotic mixing, only a few have considered excluding them from biogeographical classification all together. One way of incorporating transition zones into a natural classification is by treating them as artefacts of geographically overlapping temporally disjunct biotic areas. In doing so, geographically overlapping biotic areas may occupy the same space but have different boundaries and histories. Temporally disjunct areas do form natural hierarchical classifications, as seen in the paleobiogeographical literature. A revision of each transition zone will determine whether they are artificial areas, areas within their own right or potentially geographically overlapping temporally disjunct regions.

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TL;DR: Compared the levels of partial and overall predation among four prey types, predation of warning coloured and defended (aposematic) prey was lower than the predation for cryptic and undefended prey; however, it was the same aspredation of cryptic and defended prey.
Abstract: Aposematic organisms are often unprofitable to predators (e.g. because of defensive chemicals) which they advertise with a conspicuous signal (e.g. bright and conspicuous colour signals). Aposematism is thought to reduce predation of prey because the colour signal increases the ability of predators to learn, recognize and remember the prey’s defensive properties. The efficacy of aposematism has been extensively documented in laboratory studies, although its benefits seem to be harder to demonstrate in the field. In this study, we compared the levels of partial and overall predation among four prey types (undefended and cryptic, undefended and warning coloured, defended and cryptic, and aposematic prey). Overall, predation of warning coloured and defended (aposematic) prey was lower than the predation for cryptic and undefended prey; however, it was the same as predation of cryptic and defended prey. Moreover, aposematic prey had higher levels of partial predation (where prey was not wholly consumed by the predator) and lower attack intensities. This suggests that prey were being taste sampled, but also might be better able to survive attacks. Therefore, the benefits of aposematism may lie not only in reducing outright predation, but also in altering a predator’s post-attack behaviour, thus leading to greater escape opportunities and post-attack survival of prey. These results reinforce the importance of examining predation in more detail rather than simply examining attack rates.

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TL;DR: The roles of natural and sexual selection together on colour evolution in 15 sympatric wood-warbler species are evaluated, while considering the influence of variation in the light environment and visual background and testing how multiple selection pressures are shaping colour diversity among species.
Abstract: Natural and sexual selection drive colour evolution in animals. However, these different selective forces are often studied independently or without considering environmental variation. We evaluated the roles of natural and sexual selection together on colour evolution in 15 sympatric wood-warbler species, while considering the influence of variation in the light environment and visual background. We tested the influence of each selective pressure on male and female coloration and contrast against the background using avian visual models in phylogenetically controlled analyses. We found natural and sexual selection simultaneously driving cryptic and conspicuous plumage in males by acting on different body regions. For example, we found that ground-nesting species had males with conspicuous under-body plumage and cryptic upper-body plumage, showing how natural and sexual selection can drive colour evolution concordantly. We also found interesting relationships with female plumage, such as nest predation positively covarying with female contrast against the background, suggesting a cost to female conspicuousness. Our findings here showcase the complexity of selection on coloration and illustrate the importance of: (1) accounting for environmental variation when assessing how natural and sexual selection drive colour evolution; and (2) testing how multiple selection pressures are shaping colour diversity among species.

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TL;DR: The results showed that mitochondrial DNA is useful for distinguishing between these alternative demographic scenarios with reasonable confidence, but in extreme cases (e.g. recent divergence or large population size) there is no power to discriminate between scenarios.
Abstract: A headwater or river capture is a phenomenon commonly invoked to explain the absence of reciprocal monophyly of genetic lineages among isolated hydrographic basins in freshwater fish. Under the assumption of river capture, a secondary contact between populations previously isolated in different basins explains the observed genetic pattern. However, the absence of reciprocal monophyly could also arise under population isolation through the retention of ancestral of polymorphisms. Here, we applied an approximate Bayesian computation (ABC) framework for estimating the relative probability of scenarios with and without secondary contact. We used Cnesterodon decemmaculatus as a study model because of the multiple possible cases of river capture and the demographic parameters estimated in a previous mitochondrial DNA study that are useful for simulating scenarios to test both hypotheses using the ABC framework. Our results showed that, in general, mitochondrial DNA is useful for distinguishing between these alternative demographic scenarios with reasonable confidence, but in extreme cases (e.g. recent divergence or large population size) there is no power to discriminate between scenarios. Testing hypotheses of drainage rearrangement under a statistically rigorous framework is fundamental for understanding the evolution of freshwater fish fauna as a complement to, or in the absence of, geological evidence.

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TL;DR: P patterns of lineage distribution and diversity suggest that extinction in Australia, and colonization and radiation on proto-Papuan islands, have both shaped the extant diversity and distribution of forest dragons since the mid-Miocene.
Abstract: New Guinea has been considered both as a refuge for mesic rainforest-associated lineages that contracted in response to the late Cenozoic aridification of Australia and as a centre of biotic diversification and radiation since the mid-Miocene or earlier. Here, we estimate the diversity and a phylogeny for the Australo-Papuan forest dragons (Sauria: Agamidae; ~20 species) in order to examine the following: (1) whether New Guinea and/or proto-Papuan Islands may have been a biogeographical refuge or a source for diversity in Australia; (2) whether mesic rainforest environments are ancestral to the entire radiation, as may be predicted by the New Guinea refuge hypothesis; and (3) more broadly, how agamid ecological diversity varies across the contrasting environments of Australia and New Guinea. Patterns of lineage distribution and diversity suggest that extinction in Australia, and colonization and radiation on proto-Papuan islands, have both shaped the extant diversity and distribution of forest dragons since the mid-Miocene. The ancestral biome for all Australo-Papuan agamids is ambiguous. Both rainforest and arid-adapted radiations probably started in the early Miocene. However, despite deep-lineage diversity in New Guinea rainforest habitats, overall species and ecological diversity is low when compared with more arid areas, with terrestrial taxa being strikingly absent.