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Showing papers in "Ecological Monographs in 2017"


Journal ArticleDOI
TL;DR: In this paper, the influence of air temperature and rainfall regimes on the distribution, abundance, and species richness of mangrove forests was quantified via regional range-limit-specific analyses.
Abstract: Mangrove forests are highly productive tidal saline wetland ecosystems found along sheltered tropical and subtropical coasts. Ecologists have long assumed that climatic drivers (i.e., temperature and rainfall regimes) govern the global distribution, structure, and function of mangrove forests. However, data constraints have hindered the quantification of direct climate–mangrove linkages in many parts of the world. Recently, the quality and availability of global-scale climate and mangrove data have been improving. Here, we used these data to better understand the influence of air temperature and rainfall regimes upon the distribution, abundance, and species richness of mangrove forests. Although our analyses identify global-scale relationships and thresholds, we show that the influence of climatic drivers is best characterized via regional range-limit-specific analyses. We quantified climatic controls across targeted gradients in temperature and/or rainfall within 14 mangrove distributional range limits. Climatic thresholds for mangrove presence, abundance, and species richness differed among the 14 studied range limits. We identified minimum temperature-based thresholds for range limits in eastern North America, eastern Australia, New Zealand, eastern Asia, eastern South America, and southeast Africa. We identified rainfall-based thresholds for range limits in western North America, western Gulf of Mexico, western South America, western Australia, Middle East, northwest Africa, east central Africa, and west-central Africa. Our results show that in certain range limits (e.g., eastern North America, western Gulf of Mexico, eastern Asia), winter air temperature extremes play an especially important role. We conclude that rainfall and temperature regimes are both important in western North America, western Gulf of Mexico, and western Australia. With climate change, alterations in temperature and rainfall regimes will affect the global distribution, abundance, and diversity of mangrove forests. In general, warmer winter temperatures are expected to allow mangroves to expand poleward at the expense of salt marshes. However, dispersal and habitat availability constraints may hinder expansion near certain range limits. Along arid and semiarid coasts, decreases or increases in rainfall are expected to lead to mangrove contraction or expansion, respectively. Collectively, our analyses quantify climate–mangrove linkages and improve our understanding of the expected global- and regional-scale effects of climate change upon mangrove forests.

212 citations


Journal ArticleDOI
TL;DR: A synthetic treatment of modern coexistence theory and contemporary niche theory, showing that varying resource supply ratios reflects an equalizing process, and varying impact niche overlap reflects a stabilizing process; and varying requirement niche overlap may be both stabilizing and equalizing, but has no qualitative effect on coexistence.
Abstract: Modern coexistence theory and contemporary niche theory represent parallel frameworks for understanding the niche's role in species coexistence. Despite increasing prominence and shared goals, their compatibility and complementarity have received little attention. This paucity of overlap not only presents an obstacle to newcomers to the field, but it also precludes further conceptual advances at their interface. Here, we present a synthetic treatment of the two frameworks. We review their main concepts and explore their theoretical and empirical relationship, focusing on how the resource supply ratio, impact niche, and requirement niche of contemporary niche theory translate into the stabilizing and equalizing processes of modern coexistence theory. We show, for a general consumer–resource model, that varying resource supply ratios reflects an equalizing process; varying impact niche overlap reflects a stabilizing process; and varying requirement niche overlap may be both stabilizing and equalizing, but has no qualitative effect on coexistence. These generalizations provide mechanistic insight into modern coexistence theory, while also clarifying the role of contemporary niche theory's impacts and requirements in mediating coexistence. From an empirical perspective, we recommend a hierarchical approach, in which quantification of the strength of stabilizing mechanisms is used to guide more focused investigation into the underlying niche factors determining species coexistence. Future research that considers alternative assumptions, including different forms of species interaction, spatiotemporal heterogeneity, and priority effects, would facilitate a more complete synthesis of the two frameworks.

196 citations


Journal ArticleDOI
TL;DR: This work develops a structural approach for studying the set of parameter values compatible with n-species coexistence given the geometric constraints imposed by the matrix of competition coefficients and derives novel mathematical metrics analogous to stabilizing niche differences and fitness differences that measure the range of conditions compatible with multispecies coexistence.
Abstract: Although observations of species-rich communities have long served as a primary motivation for research on the coexistence of competitors, the majority of our empirical and theoretical understanding comes from two-species systems. How much of the coexistence observed in species-rich communities results from indirect effects among competitors that only emerge in diverse systems remains poorly understood. Resolving this issue requires simple, scalable, and intuitive metrics for quantifying the conditions for coexistence in multispecies systems, and how these conditions differ from those expected based solely on pairwise interactions. To achieve these aims, we develop a structural approach for studying the set of parameter values compatible with n-species coexistence given the geometric constraints imposed by the matrix of competition coefficients. We derive novel mathematical metrics analogous to stabilizing niche differences and fitness differences that measure the range of conditions compatible with multispecies coexistence, incorporating the effects of indirect interactions emerging in diverse systems. We show how our measures can be used to quantify the extent to which the conditions for coexistence in multispecies systems differ from those that allow pairwise coexistence, and apply the method to a field system of annual plants. We conclude by presenting new challenges and empirical opportunities emerging from our structural metrics of multispecies coexistence.

194 citations


Journal ArticleDOI
TL;DR: A generalized joint attribute model (GJAM) is developed, a probabilistic framework that readily applies to data that are combinations of presence-absence, ordinal, continuous, discrete, composition, zero-inflated, and censored, and it shows that the environment can be inverse predicted from the joint distribution of species.
Abstract: Probabilistic forecasts of species distribution and abundance require models that accommodate the range of ecological data, including a joint distribution of multiple species based on combinations of continuous and discrete observations, mostly zeros. We develop a generalized joint attribute model (GJAM), a probabilistic framework that readily applies to data that are combinations of presence-absence, ordinal, continuous, discrete, composition, zero-inflated, and censored. It does so as a joint distribution over all species providing inference on sensitivity to input variables, correlations between species on the data scale, prediction, sensitivity analysis, definition of community structure, and missing data imputation. GJAM applications illustrate flexibility to the range of species-abundance data. Applications to forest inventories demonstrate species relationships responding as a community to environmental variables. It shows that the environment can be inverse predicted from the joint distribution of species. Application to microbiome data demonstrates how inverse prediction in the GJAM framework accelerates variable selection, by isolating effects of each input variable's influence across all species.

178 citations


Journal ArticleDOI
TL;DR: A number of guidelines are provided for researchers to follow and it is stressed that they need to address methodological shortcomings before concluding that ecological differences are unrelated to phylogenetic distances.
Abstract: The merger of phylogenies with ecology has given rise to the field of “community phylogenetics” predicated on the assumption that ecological differences among species can be estimated from phylogenetic relationships (the phylogenetic distance/ecological difference, PDED, hypothesis). A number of studies have failed to find strong support for this assumption, thus challenging the utility of phylogenetic approaches. This gap might highlight the fact that the PDED relationship is not useful for community assembly, but it is difficult to know because the lack of a relationship might also be due to a number of biological or methodological reasons, including inappropriate phylogenies, skewed distributions of phylogenetic distances, the lack of consideration of models of trait evolution, or the absence of sufficient niche space in experimental and observational venues. Each of these limitations, separately or combined, may confound recent experimental or observational results that examine relationships between phylogenetic distance and ecological differences. Notably, common evolutionary models can support alternative conclusions about the relationship between evolutionary distances and ecological differences than typically assumed and can change interpretations of community-based phylogenetic analyses. Here we review a number of issues that may lead to confounded effects in community phylogenetic analyses. In light of these potential pitfalls, we provide a number of guidelines for researchers to follow and stress that they need to address methodological shortcomings before concluding that ecological differences are unrelated to phylogenetic distances. This article is protected by copyright. All rights reserved.

143 citations


Journal ArticleDOI
TL;DR: In this article, a comprehensive data set of microbial metabolic quotient (MMQ) was compiled to investigate the global patterns and controls of MMQ in top 30 cm soils, and the results showed that MMQ was negatively correlated with microbial N:P ratio, supporting growth rate theory.
Abstract: The microbial metabolic quotient (MMQ), microbial respiration per unit of biomass, is a fundamental factor controlling heterotrophic respiration, the largest carbon flux in soils. The magnitude and controls of MMQ at regional scale remain uncertain. We compiled a comprehensive data set of MMQ to investigate the global patterns and controls of MMQ in top 30 cm soils. Published MMQ values, generally measured in laboratory microcosms, were adjusted on ambient soil temperature using long-term (30 yr) average site soil temperature and a Q10 = 2. The area-weighted global average of MMQ_Soil is estimated as 1.8 (1.5–2.2) (95% confidence interval) μmol C·h−1·mmol−1 microbial biomass carbon (MBC) with substantial variations across biomes and between cropland and natural ecosystems. Variation was most closely associated with biological factors, followed by edaphic and meteorological parameters. MMQ_Soil was greatest in sandy clay and sandy clay loam and showed a pH maximum of 6.7 ± 0.1 (mean ± se). At large scale, MMQ_Soil varied with latitude and mean annual temperature (MAT), and was negatively correlated with microbial N:P ratio, supporting growth rate theory. These trends led to large differences in MMQ_Soil between natural ecosystems and cropland. When MMQ was adjusted to 11°C (MMQ_Ref), the global MAT in the top 30 cm of soils, the area-weighted global averages of MMQ_Ref was 1.5 (1.3–1.8) μmol C·mmol MBC−1·h−1. The values, trends, and controls of MMQ_Soil add to our understanding of soil microbial influences on soil carbon cycling and could be used to represent microbial activity in global carbon models.

96 citations


Journal ArticleDOI
TL;DR: In this paper, the authors developed a conceptual model of carbon dynamics within a river corridor, which includes the active channel and the riparian zone, and showed that the morphology and processes of a river channel regulate the ability to store, transform, and transport organic carbon.
Abstract: Research in stream metabolism, gas exchange, and sediment dynamics indicates that rivers are an active component of the global carbon cycle and that river form and process can influence partitioning of terrestrially derived carbon among the atmosphere, geosphere, and ocean. Here we develop a conceptual model of carbon dynamics (inputs, outputs, and storage of organic carbon) within a river corridor, which includes the active channel and the riparian zone. The exchange of carbon from the channel to the riparian zone represents potential for storage of transported carbon not included in the “active pipe” model of organic carbon (OC) dynamics in freshwater systems. The active pipe model recognizes that river processes influence carbon dynamics, but focuses on CO2 emissions from the channel and eventual delivery to the ocean. We also review how human activities directly and indirectly alter carbon dynamics within river corridors. We propose that dams create the most significant alteration of carbon dynamics within a channel, but that alteration of riparian zones, including the reduction of lateral connectivity between the channel and riparian zone, constitutes the most substantial change of carbon dynamics in river corridors. We argue that the morphology and processes of a river corridor regulate the ability to store, transform, and transport OC, and that people are pervasive modifiers of river morphology and processes. The net effect of most human activities, with the notable exception of reservoir construction, appears to be that of reducing the ability of river corridors to store OC within biota and sediment, which effectively converts river corridors to OC sources rather than OC sinks. We conclude by summarizing knowledge gaps in OC dynamics and the implications of our findings for managing OC dynamics within river corridors.

81 citations


Journal ArticleDOI
TL;DR: In the world's largest remaining temperate grassland, this article found that experimentally increased precipitation enhanced net primary production, soil-available nitrogen and foliar nitrogen concentrations during the first six years, but it ceased to do so in the following four years, unless nitrogen was simultaneously added with water.
Abstract: Given that plant growth is often water-limited in grasslands, it has been proposed that projected increases in precipitation could increase plant productivity and carbon sequestration. However, the existing evidence for this hypothesis comes primarily from observational studies along natural precipitation gradients or from short-term manipulative experiments. It remains unclear whether long-term increased precipitation persistently stimulates grassland productivity. In the world's largest remaining temperate grassland, we found that experimentally increased precipitation enhanced net primary production, soil-available nitrogen and foliar nitrogen concentrations during the first six years, but it ceased to do so in the following four years, unless nitrogen was simultaneously added with water. The 15N enrichment of plant and soil nitrogen pools in later years indicates increased nitrogen losses, which exacerbated nitrogen limitation and ended the stimulation of productivity by increased precipitation. Changes in species abundance might have contributed little to the changes in water treatment effects. Our study demonstrates that the long-term response of grassland ecosystems to increased precipitation will be mediated by nitrogen availability. Our results also point to a shift from co-limitation by water and nitrogen early to perhaps limitation by nitrogen only later in this temperate grassland, highlighting significant variations in the type of resource limitation induced by climate change.

75 citations


Journal ArticleDOI
TL;DR: It is concluded that future changes in forest dynamics can cause amplifying climate feedbacks from temperate forest ecosystems and radiative forcing was most strongly driven by carbon exchange.
Abstract: Currently, the temperate forest biome cools the earth's climate and dampens anthropogenic climate change. However, climate change will substantially alter forest dynamics in the future, affecting the climate regulation function of forests. Increasing natural disturbances can reduce carbon uptake and evaporative cooling, but at the same time increase the albedo of a landscape. Simultaneous changes in vegetation composition can mitigate disturbance impacts, but also influence climate regulation directly (e.g., via albedo changes). As a result of a number of interactive drivers (changes in climate, vegetation, and disturbance) and their simultaneous effects on climate-relevant processes (carbon exchange, albedo, latent heat flux) the future climate regulation function of forests remains highly uncertain. Here we address these complex interactions to assess the effect of future forest dynamics on the climate system. Our specific objectives were (1) to investigate the long-term interactions between changing vegetation composition and disturbance regimes under climate change, (2) to quantify the response of climate regulation to changes in forest dynamics, and (3) to identify the main drivers of the future influence of forests on the climate system. We investigated these issues using the individual-based forest landscape and disturbance model (iLand). Simulations were run over 200 yr for Kalkalpen National Park (Austria), assuming different future climate projections, and incorporating dynamically responding wind and bark beetle disturbances. To consistently assess the net effect on climate the simulated responses of carbon exchange, albedo, and latent heat flux were expressed as contributions to radiative forcing. We found that climate change increased disturbances (+27.7% over 200 yr) and specifically bark beetle activity during the 21st century. However, negative feedbacks from a simultaneously changing tree species composition (+28.0% broadleaved species) decreased disturbance activity in the long run (-10.1%), mainly by reducing the host trees available for bark beetles. Climate change and the resulting future forest dynamics significantly reduced the climate regulation function of the landscape, increasing radiative forcing by up to +10.2% on average over 200 yr. Overall, radiative forcing was most strongly driven by carbon exchange. We conclude that future changes in forest dynamics can cause amplifying climate feedbacks from temperate forest ecosystems.

73 citations


Journal ArticleDOI
TL;DR: This study showed that the occurrence and direction of latitudinal clines in plant traits were commonly dependent on where the study was conducted (north or south), indicating strong phenotypic plasticity in these genetic-based clines.
Abstract: The juxtaposition of plant-species invasions with latitudinal gradients in herbivore pressure is an important yet mostly unexplored issue in invasion biology. Latitudinal clines in defense and palatability to herbivores are expected to exist in native plant species but the evolution of these clines may lag behind for invasive plant species resulting in non-parallel latitudinal clines that may impact invasion success. Our study focused on a native and European invasive lineages of the common reed Phragmites australis in North America. Using native and invasive genotypes of P. australis collected across a 17° latitudinal range, we performed experiments in replicate northern and southern common gardens to investigate whether these two lineages exhibited different genetically based latitudinal clines in defenses, nutritional condition and palatability to their herbivores, the aphid Hyalopterus pruni and the fall armyworm Spodoptera frugiperda. We also tested whether invasive genotypes are more phenotypically plastic than native genotypes and whether plasticity varies with latitude. Although invasive genotypes did not exhibit higher defense levels (leaf toughness, phenolics, % carbon), they were considerably less palatable to their herbivores than native genotypes. Genetic-based latitudinal clines were evident for both native and invasive P. australis and for all defenses, nutrients and at least one palatability trait for each herbivore. In 36% of the cases where clines were evident, they were non-parallel between the two lineages. These data suggest that clines in the invasive genotypes of P. australis evolved within the past ~100 years. Moreover, our study showed that the occurrence and direction of latitudinal clines in plant traits were commonly dependent on where the study was conducted (north or south), indicating strong phenotypic plasticity in these genetic-based clines. Finally, traits for invasive genotypes of P. australis were 2.5 times more plastic than traits for native genotypes. Interestingly, plasticity for native but not invasive genotypes was strongly dependent on latitude of origin. Such spatial heterogeneity within and between the native and invasive lineages of P. australis with respect to their interactions with herbivores can generate substantial spatial variability in biotic resistance that can have important implications for the establishment and spread of invasive genotypes and species. This article is protected by copyright. All rights reserved.

70 citations


Journal ArticleDOI
TL;DR: In this paper, the authors cross-date 745 fire scars in 378 samples of remnant Scots pines and delineate 254 individual forest fires during the past 700 years in a 74-km2 section of Trillemarka-Rollagsfjell Nature Reserve in south-central Norway.
Abstract: Knowing the historical variation in fire regimes is instrumental in managing forests today and in predicting what may happen in the future. By cross-dating 745 fire scars in 378 samples of remnant Scots pines, we delineated 254 individual forest fires during the past 700 years in a 74-km2 section of Trillemarka-Rollagsfjell Nature Reserve in south-central Norway. Fire sizes, numbers, burn rates, and frequencies were compared with historical climate proxies, vegetation maps, and written sources. The results revealed patterns consistent with a predominantly climate-driven fire regime up to 1625, followed by periods of strong anthropogenic influence that increased fire frequency during 1600–1700s and diminished fires during 1800–1900s. This was documented by an abrupt increase in number of small fires from the early 1600s that markedly shortened fire intervals from a median of 73 to 37 yr. This shift in fire frequency coincided with a sudden appearance of early-season fires from 1625 and onward. Whereas late-season burn rate increased with summer temperature, no such relationship was found for early-season fires. These results were corroborated by written sources that describe anthropogenic forest fires and slash-and-burn cultivation expanding with the increasing population from the late 1500s and subsequently diminishing due to increasing timber values during 1700–1800s. Whereas human activity strongly influenced the fire regime at multidecadal to centennial scales, it was the interannual variability in climate that triggered large fire events, especially during the pre-1625 period. Prior to 1625, the percentage of years with fire tripled from 7% during cold summers (10–12°C) to 21% during warm summers (14–16°C). Burn rate increased even more, from 0.01% to 1.3% for the same temperature intervals. Ecologically, the post-1625 period is remarkable in such a way that human activity, first by greatly increasing fire frequency and subsequently almost eradicating fires, possibly influenced the fire regime to such an extent that it may be unprecedented for millennia.

Journal ArticleDOI
TL;DR: In this paper, the authors argue that identifying and controlling regime shifts in response to presses and pulses will require a greater focus on the duration, not just the intensity, of changes in driver variables.
Abstract: Regime shifts are difficult-to-reverse transitions that occur when an ecosystem reorganizes around a new set of self-reinforcing feedbacks. Regime shifts are predicted to occur when the intensity of some exogenous driver variable, such as temperature, annual harvest rate, or nutrient addition rate, gradually approaches and crosses a threshold value, initiating a transition to an alternative state. However, many driver variables now change rapidly as presses or pulses, not gradually, requiring new conceptual frameworks for understanding and predicting regime shifts. We argue that identifying and controlling regime shifts in response to presses and pulses will require a greater focus on the duration, not just the intensity, of changes in driver variables. In ecosystems with slower dynamics, transitions to an alternative state can take years to decades and as a result, a driver press with an intensity capable of resulting in a regime shift over long time spans may fail to cause a regime shift when applied for shorter durations. We illustrate these ideas using simulations of local-scale alternative stable state models and preliminary evidence from long-term grazing and eutrophication experiments. The simulations also suggest that small changes in the duration of driver presses or pulses can determine whether an ecosystem recovers to its original state. These insights may extend to larger scales. In spatially extended simulations that included patchiness, spatial heterogeneity, and spatial connectivity, all patches recovered to their original state after shorter presses. However, once press duration exceeded a threshold, growing proportions of the landscape shifted to an alternative state as press duration increased. We observed similar patchy transitions in a catchment-scale experiment that reinstated frequent fires approximately halfway through a regime shift from grassland to shrubland, initiated by fire suppression. In both the local- and larger-scale models, the threshold duration needed to elicit regime shifts decreased as press intensity increased or when factors counteracting regime shifts weakened. These multiple lines of evidence suggest that conceptualizing regime shifts as an interactive function of the intensity and duration of driver changes will increase understanding of the varying effects of driver presses, pulses, and cycles on ecosystem dynamics.

Journal ArticleDOI
TL;DR: The lack of among-individual correlations of otolith traits in properly formulated models and the biases that can be introduced by not including appropriate intrinsic covariates suggest that caution is needed when assuming multi-elemental signatures are reflective solely of shared environments.
Abstract: Biogeochemical tracers found in the hard parts of organisms are frequently used to answer key ecological questions by linking the organism with the environment. However, the biogeochemical relationship between the environment and the biogenic structure becomes less predictable in higher organisms as physiological processes become more complex. Here, we use the simultaneous combination of biogeochemical tracers and fish growth analyzed with a novel modeling framework to describe physiological and environmental controls on otolith chemistry in an upwelling zone. First, we develop increasingly complex univariate mixed models to describe and partition intrinsic (age effects) and extrinsic (environmental parameters) factors influencing fish growth and otolith element concentrations through time. Second, we use a multivariate mixed model to investigate the directionality and strength between element-to-element and growth relationships and test hypotheses regarding physiological and environmental controls on element assimilation in otoliths. We apply these models to continuous element (Na, Sr, Mg, Ba, Li) and growth increment profiles (monthly resolution over 17 years) derived from otoliths of reef ocean perch (Helicolenus percoides), a wild-caught, site-attached, fully marine fish. With a conceptual model, we hypothesize that otolith traits (elements and growth) driven by environmental conditions will correlate both within an otolith, reflecting the time dependency of growth and element assimilation, and among individuals that experience a similar set of external conditions. We found some elements (Sr:Ca and Na:Ca) are mainly controlled by physiological processes, while other elements (Ba:Ca and Li:Ca) are more environmentally influenced. Within an individual fish, the strength and direction of correlation varies among otolith traits, particularly those under environmental control. Correlations among physiologically regulated elements tend to be stronger than those primarily controlled by environmental drivers. Surprisingly, only Ba:Ca and growth are significantly correlated among individuals. Failure to appropriately account for intrinsic effects (e.g. age) led to inflated estimates of among individual correlations and a depression of within individual correlations. Together, the lack of among-individual correlations of otolith traits in properly formulated models and the biases that can be introduced by not including appropriate intrinsic covariates suggest that caution is needed when assuming multi-elemental signatures are reflective solely of shared environments. This article is protected by copyright. All rights reserved.

Journal ArticleDOI
TL;DR: In this paper, the authors compared theoretical and empirical methods for measuring skin resistance to water loss of a Plethodon salamander collected from nature and determined the ecological implications of incorporating skin and boundary layer resistance into a species range model that estimated potential activity time and energy balance throughout the geographic range of the study species.
Abstract: Species ranges are constrained by the physiological tolerances of organisms to climatic conditions. By incorporating physiological constraints, species distribution models can identify how biotic and abiotic factors constrain a species' geographic range. Rates of water loss influence species distributions, but characterizing water loss for an individual requires complex calculations. Skin resistance to water loss (ri) is considered to be the most informative metric of water loss rates because it controls for experimental biases. However, calculating ri requires biophysical equations to solve for the resistance of the air that surrounds an organism, termed the boundary layer resistance (rb). Here, we compared theoretical and empirical methods for measuring skin resistance to water loss of a Plethodon salamander collected from nature. For the empirical methods, we measured rb of agar replicas at five body sizes, two temperatures, three vapor pressure deficits, and six flow rates using a flow-through system. We also calculated rb using biophysical equations under the same experimental conditions. We then determined the ecological implications of incorporating skin and boundary layer resistance into a species range model that estimated potential activity time and energy balance throughout the geographic range of the study species. We found that empirical methods for calculating rb resulted in negative values of ri, whereas biophysical calculations produced meaningful values of ri. The species range model determined that ignoring realistic boundary layer and skin resistances reduced average estimates of energy balance by as much as 64% and potential activity time by 88% throughout the spatial extent of the model. We conclude that the use of agar replicas is an inadequate technique to characterize skin resistance to water loss, and incorporating boundary layer and skin resistances to water loss improves estimates of activity and energetics for mechanistic species distribution models. More importantly, our study suggests that incorporating the physical processes underlying rates of water loss could improve estimates of habitat suitability for many animals.

Journal ArticleDOI
TL;DR: An integrative approach combining measures in geographic and ecological niche space is developed and used to classify and explain migratory behavior of 71 annual roe deer movement trajectories in European study areas and underlines that partial migration is a form of behavioral plasticity.
Abstract: Partial migration, when only part of the population migrates seasonally while the other part remains resident on the shared range, is the most common form of migration in ungulates. Migration is often defined by spatial separation of seasonal ranges and consequently, classification of individuals as migrants or residents is usually only based on geographic criteria. However, the underlying mechanism for migration is hypothesized to be movement in response to spatiotemporal resource variability and thus, migrants are assumed to travel an “ecological distance” (ED) or shift their realized ecological niches. While ecological and geographic distanc- es should be related, their relationship may depend on landscape heterogeneity. Here, we tested the utility of ecological niche theory to both classify migratory individuals and to understand the underlying ecological factors for migratory behavior. We developed an integrative approach combining measures in geographic and ecological niche space and used this to classify and explain migratory behavior of 71 annual roe deer (Capreolus capreolus) movement trajectories in five European study areas. First, to assess the utility of the ED concept for classifying migra- tory behavior, we tested whether roe deer sought the same ecological conditions year- round or moved to different ecological conditions by measuring the annual ED travelled and the seasonal niche overlap using multivariate statistics. Comparing methods to classify migrants and resi- dents based on geographic and ecological niche space, we found that migratory roe deer switched between seasons both in geographic and in ecological dimensions. Second, we tested which seasonal ecological factors separated resident from migrant niches using discriminant analysis and which broad- scale determinants (e.g., spatiotemporal forage variation and population density) predicted migration probability using generalized linear models. Our results indicated that factors describing forage and topographic variability discriminated seasonal migrant from resident niches. Determinants for predicting migration probability included the temporal varia- tion (seasonality) and also the spatial variability of forage patches. Last, we also found sugges- tive evidence for a positive relationship between population density and migration probability. By applying the ecological niche concept to the study of partial migration in ungulates, our work underlines that partial migration is a form of behavioral plasticity.

Journal ArticleDOI
TL;DR: This work integrates current theory on variance effects with co-limitation theory into a single unified conceptual framework that has general applicability and can provide powerful insights on how the global change-induced shifts in multiple environmental factors affect the physiological performance of organisms.
Abstract: Understanding how variance in environmental factors affects physiological performance , population growth, and persistence is central in ecology. Despite recent interest in the effects of variance in single biological drivers, such as temperature, we have lacked a comprehensive framework for predicting how the variances and covariances between multiple environmental factors will affect physiological rates. Here, we integrate current theory on variance effects with co-limitation theory into a single unified conceptual framework that has general applicability. We show how the framework can be applied (1) to generate mathematically tractable predictions of the physiological effects of multiple fluctuating co-limiting factors , (2) to understand how each co-limiting factor contributes to these effects, and (3) to detect mechanisms such as acclimation or physiological stress when they are at play. We show that the statistical covariance of co-limiting factors, which has not been considered before, can be a strong driver of physiological performance in various ecological contexts. Our framework can provide powerful insights on how the global change-induced shifts in multiple environmental factors affect the physiological performance of organisms.

Journal ArticleDOI
TL;DR: TROLL as mentioned in this paper is an individual-based and spatially-explicit forest growth simulator that integrates recent advances in plant physiology, and the model was parameterized for an Amazonian tropical rainforest.
Abstract: Forest dynamic models predict the current and future states of ecosystems and are a nexus between physiological processes and empirical data, forest plot inventories and remote-sensing information. The problem of biodiversity representation in these models has long been an impediment to a detailed understanding of ecosystem processes. This challenge is amplified in species-rich and high-carbon tropical forests. Here we describe an individual-based and spatially-explicit forest growth simulator, TROLL, that integrates recent advances in plant physiology. Processes (carbon assimilation, allocation, reproduction and mortality) are linked to species-specific functional traits, and the model was parameterized for an Amazonian tropical rainforest. We simulated a forest regeneration experiment from bare soil, and we validated it against observations at our sites. Simulated forest regeneration compared well with observations for stem densities, gross primary productivity, aboveground biomass, and floristic composition. After 500 years of regrowth, the simulated forest displayed structural characteristics similar to observations (e.g. leaf area index and trunk diameter distribution). We then assessed the model's sensitivity to a number of key model parameters: light extinction coefficient and carbon quantum yield, and to a lesser extent mortality rate, and carbon allocation, all influenced ecosystem features. To illustrate the potential of the approach, we tested whether variation in species richness and composition influenced ecosystem properties. Overall, species richness had a positive effect on ecosystem processes, but this effect was controlled by the identity of species rather by richness per se. Also, functional trait community means had a stronger effect than functional diversity on ecosystem processes. TROLL should be applicable to many tropical forests sites, and data requirement is tailored to ongoing trait collection efforts. Such a model should foster the dialogue between ecology and the vegetation modeling community, help improve the predictive power of models, and eventually better inform policy choices. This article is protected by copyright. All rights reserved.

Journal ArticleDOI
TL;DR: This study highlights the importance of including diverse life history stages in surveys of community structure, and has implications for the possible impacts of climate change on the distribution of fern diversity.
Abstract: Ferns are the only major lineage of vascular plants that have nutritionally independent sporophyte (diploid) and gametophyte (haploid) life stages. However, the implications of this unique life cycle for fern community ecology have rarely been considered. To compare patterns of community structure between fern sporophytes and gametophytes, we conducted a survey of the ferns of the islands of Moorea and Tahiti (French Polynesia). We first constructed a DNA barcode library (plastid rbcL and trnH–psbA) for the two island floras including 145 fern species. We then used these DNA barcodes to identify more than 1300 field-collected gametophytes from 25 plots spanning an elevational gradient from 200 to 2000 m. We found that species richness of fern sporophytes conforms to the well-known unimodal (i.e., mid-elevation peak) pattern, reaching a maximum at ca. 1000 – 1200 m. Moreover, we found that fern sporophyte communities become increasingly phylogenetically clustered at high elevations. In contrast, species richness of fern gametophytes was consistent across sites, and gametophytes showed no correlation of phylogenetic community structure with elevation. Turnover of sporophyte and gametophyte communities was closely linked with elevation at shallow phylogenetic levels, but not at deeper nodes in the tree. Finally, we found several species for which gametophytes had broader ranges than sporophytes, including a vittarioid fern with abundant gametophytes but extremely rare sporophytes. Our study highlights the importance of including diverse life history stages in surveys of community structure, and has implications for the possible impacts of climate change on the distribution of fern diversity. This article is protected by copyright. All rights reserved.

Journal ArticleDOI
TL;DR: In this article, the authors propose a fourth possibility where alternating patches are governed by the interplay of two important biotic processes: bioturbation by soil fauna that locally ameliorates soil conditions, promoting tall plant communities, alternating with biocompaction by large herbivores that locally impairs soil conditions and promotes lawn communities.
Abstract: Grazing ecosystems ranging from the Arctic tundra to tropical savannas are often characterized by small-scale mosaics of herbivore-preferred and herbivore-avoided patches, promoting plant biodiversity and resilience. The three leading explanations for bistable patchiness in grazed ecosystems are (1) herbivore-driven nutrient cycling, (2) plant-growth–water-infiltration feedback under aridity, and (3) irreversible local herbivore-induced abiotic stress (topsoil erosion, salinity). However, these insufficiently explain the high temporal patch dynamics and wide-ranging distribution of grazing mosaics across productive habitats. Here we propose a fourth possibility where alternating patches are governed by the interplay of two important biotic processes: bioturbation by soil fauna that locally ameliorates soil conditions, promoting tall plant communities, alternating with biocompaction by large herbivores that locally impairs soil conditions, and promotes lawn communities. We review mechanisms that explain rapid conversions between bioturbation- and biocompaction-dominated patches, and provide a global map where this mechanism is possible. With a simple model we illustrate that this fourth mechanism expands the range of conditions under which grazing mosaics can persist. We conclude that the response of grazing systems to global change, as degradation or catastrophic droughts, will be contingent on the correct identification of the dominant process that drives their vegetation structural heterogeneity.

Journal ArticleDOI
TL;DR: In this article, the physical changes to the river delta and estuary habitats during dam removal were linked to responses in biological communities, which increased the amount of supratidal and intertidal habitat, but also reduced the influx of seawater into the pre-removal estuary complex.
Abstract: Habitat diversity and heterogeneity play a fundamental role in structuring ecological communities. Dam emplacement and removal can fundamentally alter habitat characteristics, which in turn can affect associated biological communities. Beginning in the early 1900s, the Elwha and Glines Canyon dams in Washington, USA, withheld an estimated 30 million tonnes of sediment from river, coastal, and nearshore habitats. During the staged removal of these dams—the largest dam removal project in history—over 14 million tonnes of sediment were released from the former reservoirs. Our interdisciplinary study in coastal habitats—the first of its kind—shows how the physical changes to the river delta and estuary habitats during dam removal were linked to responses in biological communities. Sediment released during dam removal resulted in over a meter of sedimentation in the estuary and over 400 m of expansion of the river mouth delta landform. These changes increased the amount of supratidal and intertidal habitat, but also reduced the influx of seawater into the pre-removal estuary complex. The effects of these geomorphic and hydrologic changes cascaded to biological systems, reducing the abundance of macroinvertebrates and fish in the estuary and shifting community composition from brackish to freshwater-dominated species. Vegetation did not significantly change on the delta, but pioneer vegetation increased during dam removal, coinciding with the addition of newly available habitat. Understanding how coastal habitats respond to large-scale human stressors—and in some cases the removal of those stressors—is increasingly important as human uses and restoration activities increase in these habitats. This article is protected by copyright. All rights reserved.

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TL;DR: Analysis of settlement decisions and reproductive success of Eurasian pygmy owls in the presence of both breeding conspecifics and their competitor and intraguild predator, Tengmalm's owls, under fluctuating abundance of their primary prey suggests short term fitness costs when living close to competitors are higher than those induced by intraspecific competition.
Abstract: The spatial distribution of predators is affected by intra- and interspecific interactions within the predator guild. Studying these interactions under fluctuating food availability, while taking habitat characteristics into account, offers a quasi-experimental set up to determine the relative impact of con- and heterospecifics on reproductive success of predators. We analyzed the settlement decisions and reproductive success of Eurasian pygmy owls (Glaucidium passerinum) in the presence of both breeding conspecifics and their competitor and intraguild predator, Tengmalm's owls (Aegolius funereus), under fluctuating abundance of their primary prey (voles). We used detailed data, collected across 11 years in a large study area (1300 km²), on the spatial and temporal variation of habitat characteristics in all available nesting sites, local densities of both species, and vole abundance. We found that pygmy owls strongly avoided breeding close to conspecifics but did not avoid Tengmalm's owl nests. Nest box occupation of pygmy owls was positively correlated to the proportion of old spruce, mature and old pine forests and farmlands, and occupation probability was higher at high vole abundance and in areas occupied in previous years. Pygmy owl avoidance of conspecifics decreased when voles were abundant. At high conspecific density, pygmy owls showed lower hatching success and delayed hatching date, in agreement with the observed spatial avoidance. Finally, even though breeding pygmy owls did not spatially avoid Tengmalm's owls, the density of heterospecifics correlated with low hatching and fledging success in pygmy owls. This suggests short term fitness costs when living close to competitors, even when lethal effects of intraguild interactions are subtle. Our results suggest that joint costs of exploitative and interference competition by Tengmalm's owls, as well as intraguild predation, were lower than those induced by intraspecific competition only. This result might be due to the similar body size between the species considered, Tengmalm's owls being only twice as large as pygmy owls. Interactions among con- and heterospecifics can therefore modify the spatial settlement and reproductive success of individuals on a landscape scale, also within the predator guild. This article is protected by copyright. All rights reserved.

Journal ArticleDOI
TL;DR: Variations in surf zone hydrodynamics appear to play a fundamental role in regulating barnacle populations along the open coast, which, in turn, may have consequences for the entire intertidal community.
Abstract: Larvae in the coastal ocean are transported toward shore by a variety of mechanisms. Crossing the surf zone is the last step in a shoreward migration and surf zones may act as semipermeable barriers altering delivery of larvae to the shore. We related variation in the structure of intertidal barnacle populations to surf zone width (surf zone hydrodynamics proxy), wave height, alongshore wind stress (upwelling proxy), solar radiation, and latitude at 40 rocky intertidal sites from San Diego, California to the Olympic Peninsula, Washington. We measured daily settlement and weekly recruitment of barnacles at selected sites and related these measures to surf zone width. Chthamalus density varied inversely with that of Balanus, and the density of Balanus and new recruits was negatively related to solar radiation. Across the region, long-term mean wave height and an indicator of upwelling intensity and frequency did not explain variation in Balanus or new recruit densities. Balanus and new recruit densities, daily settlement, and weekly recruitment were up to three orders of magnitude higher at sites with wide (>50 m), more dissipative surf zones with bathymetric rip currents than at sites with narrow (<50 m) more reflective surf zones. Surf zone width explained 30–50% of the variability in Balanus and new recruit densities. We sampled a subset of sites <5 km apart where coastal hydrodynamics such as upwelling should be very similar. At paired sites with similar surf zone widths, Balanus densities were not different. If surf zone widths at paired sites were dissimilar, Balanus densities, daily settlement, and weekly recruitment were significantly higher at sites with the wider, more dissipative surf zone. The primary drivers of surf zone hydrodynamics are the wave climate and the slope of the shore and these persist over time; therefore site-specific stability in surf zone hydrodynamics should result in stable barnacle population characteristics. Variations in surf zone hydrodynamics appear to play a fundamental role in regulating barnacle populations along the open coast, which, in turn, may have consequences for the entire intertidal community.

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TL;DR: A high level of correlation between the studied phase of the outbreak cycle and annual variations in the survivorship over the postdiapause period is found, suggesting that post diapause survivorship was the chief determinant of the cycle.
Abstract: We conducted a 14-year intensive study of spruce budworm (Choristoneura fumiferana (Clem.)) survivorship at three study plots in largely balsam fir (Abies balsamea (L.) Mill.) stands in New Brunswick, Canada, to elucidate certain key mechanisms underlying spruce budworm outbreak cycles. The study covered a peak-to-declining phase (from 1981 and 1994) of the budworm outbreak cycle that had started in the early 1960s. Frequent sampling was carried out in each plot-year to construct a practically continuous survivorship curve, and the annual variation in population density was estimated. We found a high level of correlation between the studied phase of the outbreak cycle and annual variations in the survivorship over the postdiapause period, suggesting that postdiapause survivorship was the chief determinant of the cycle. We found the annual changes in population density in the present study to be closely similar in pattern to those from the provincial budworm surveys conducted in much larger areas. This implies that the mechanism underlying the population process found in the few study plots in largely balsam fir stands also applies to the process in much larger areas of diverse stand types. The main source of postdiapause mortality is found to be natural enemies. The impacts of parasitoids and disease are evaluated by rearing budworm samples in the laboratory. Hymenopteran and dipteran parasitoids are by far the major sources of mortality, and microsporidians are the most prevalent pathogen. Occurrences of other entomopathogenic fungi and viruses were insignificant throughout the study. Seasonal changes in laboratory survivorship are compared with the corresponding field survivorship to estimate the effect of predation. No major mortality factor is found to singly play a predominant role in determining the outbreak cycle. Conversely, some minor factors are shown to have played significant roles. Thus, the importance of recognizing the action of natural enemies as a complex is emphasized for understanding the budworm outbreak cycle. Finally, centered around the roles played by the chronological succession of natural enemies in the present study, the results of budworm research in New Brunswick since the mid-1940s are synthesized to outline basic mechanisms underlying the outbreak processes as a guide for further studies. This article is protected by copyright. All rights reserved.

Journal ArticleDOI
TL;DR: These three-year findings with juvenile trees suggest that sugar maple range limits may instead be constrained by factors besides climate and competition, by those factors at another life stage, and/or by climate events such as heat waves, droughts, and cold snaps that occur at longer return intervals.
Abstract: Plant species distributions, broadly shaped by climate, may also be constrained by other species. The degree to which biotic factors affect range limits is unclear, however, and few experimental studies have investigated both biotic and abiotic factors across and beyond a species’ range. We examined seedling survival and net growth for three years in contrasting canopy type (closed canopy vs. gap) and neighbor density (clipped versus unclipped) environments for northern, central and southern populations of sugar maple (Acer saccharum) representing a climate-of-origin gradient, experimentally planted from Arkansas, USA to Ontario, Canada at ten forested sites along a 1,700 km transect spanning beyond the species’ range. We hypothesized that each population's highest survival and growth would occur in its region of origin, with poorer performance in areas cooler or warmer. Refuting this hypothesis, seedlings of all three populations had greater growth and survival in sites increasingly warmer than their point of origin, although they did show poorer growth and survival at increasingly colder sites. We also hypothesized that maple survival and net growth near and beyond range margins are constrained primarily by cold temperature limitation in the north, where we expected neighbors to facilitate survival, and by competition in the south, where we expected to enhance survival and growth by reducing neighbor density. Results partially supported the hypothesis concerning biotic interactions: in canopy gaps, understory neighbors enhanced maple growth at the coolest sites but did not suppress growth as expected at the warmest sites. As the northern population grew and survived reasonably well beyond the northern range limit, and as all populations performed best at warmer sites, including beyond the southern range limit, there was tepid, if any, support for the hypothesis that climate regulated the northern limit and absolutely no support for the hypothesis that competition regulated the southern limit. Together, these three-year findings with juvenile trees suggest that sugar maple range limits may instead be constrained by factors besides climate and competition, by those factors at another life stage, and/or by climate events such as heat waves, droughts, and cold snaps that occur at longer return intervals. This article is protected by copyright. All rights reserved.

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TL;DR: This paper used the ecohydrologic model RHESSys (regional hydro-ecologic simulation system) to evaluate how interannual climate variability may affect the magnitude of N mineralization, nitrification, N export, and plant recovery following fire.
Abstract: Climate change models predict that interannual rainfall variability will increase in California over the next several decades; these changes will likely influence how frequently California ecosystems burn and how they respond to fire. Fires uncouple N mobilization from uptake by destroying plant biomass and increasing nitrification. Following fire, autumn and winter rains can leach N into streams from slopes that have been denuded. The amount of N exported depends on how rapidly soil microbes metabolize it into mobile forms such as NO3− , and the rate that recovering plants take up available N. However, the long-term effects of a changing climate on postfire N dynamics remain unknown. We used the ecohydrologic model RHESSys (regional hydro-ecologic simulation system) to evaluate how interannual climate variability may affect the magnitude of N mineralization, nitrification, N export, and plant recovery following fire. N export was highest when fire was followed by drought; even though there was less water moving through the system, dry conditions prolonged the period during which N mobilization was decoupled from plant uptake. We also found that the effects of drought on N export were magnified in stands dominated by obligate seeders, which initially recovered more slowly than resprouters. These findings suggest that climate may regulate N balance most powerfully by influencing how quickly plants “turn on” and begin to immobilize N.

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TL;DR: Two new parametric approaches are proposed to detect and quantify periodic patterns of space use in animal tracking data, via periodicity in the expected position or circulation in the stochastic component of the path.
Abstract: Most species exhibit periodic behaviors in response to cycles in resources and risks in the environment (circadian, lunar, seasonal, and so on). The ability to respond to anthropogenic perturbations by modifying periodic behaviors remains little studied, as does the question of whether and how periodic behaviors translate into periodic patterns in animal space use, on which we focus. Extending existing continuous-time stochastic movement models, we propose two new parametric approaches to detect and quantify periodic patterns of space use in animal tracking data, via periodicity in the expected position or circulation in the stochastic component of the path. We use them to study the movements of maned wolves (Chrysocyon brachyurus) and coyotes (Canis latrans) along anthropization gradients. These case studies illustrate how periodic patterns can be of natural origin (cycles in the environment) or anthropogenic origin (periodicity in human activity or restrictions on available habitat), suggesting a role for periodic patterns of space use in species persistence in anthropized areas. The method builds upon and extends existing functionalities in the R-package ctmm, in which the necessary tools are made available.

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TL;DR: In this article, the authors used radio telemetry data to demonstrate that a large fraction of breeding adult and juvenile ‘Iiwi originating from an upper-elevation (1,920m) population at Hakalau Forest National Wildlife Refuge exhibit post-breeding movements well below the upper elevational limit for mosquitoes.
Abstract: Altitudinal movement by tropical birds to track seasonally variable resources can move them from protected areas to areas of increased vulnerability. In Hawaiʻi, historical reports suggest that many Hawaiian honeycreepers such as the ‘I‘iwi (Drepanis coccinea) once undertook seasonal migrations, but the existence of such movements today is unclear. Because Hawaiian honeycreepers are highly susceptible to avian malaria, currently minimal in high-elevation forests, understanding the degree to which honeycreepers visit lower elevation forests may be critical to predict the current impact of malaria on population dynamics and how susceptible bird populations may respond to climate change and mitigation scenarios. Using radio telemetry data, we demonstrate for the first time that a large fraction of breeding adult and juvenile ‘I‘iwi originating from an upper-elevation (1,920 m) population at Hakalau Forest National Wildlife Refuge exhibit post-breeding movements well below the upper elevational limit for mosquitoes. Bloom data suggest seasonal variation in floral resources is the primary driver of seasonal movement for ‘I‘iwi. To understand the demographic implications of such movement, we developed a spatial individual-based model calibrated using previously published and original data. ʻI‘iwi dynamics were simulated backward in time, to estimate population levels in the absence of avian malaria, and forward in time, to assess the impact of climate warming as well as two potential mitigation actions. Even in disease-free ‘refuge’ populations, we found that breeding densities failed to reach the estimated carrying capacity, suggesting the existence of a seasonal “migration load” as a result of travel to disease-prevalent areas. We predict that ‘I‘iwi may be on the verge of extinction in 2100, with the total number of pairs reaching only ~ 0.2–12.3% of the estimated pre-malaria density, based on an optimistic climate change scenario. The probability of extinction of ‘I‘iwi populations, as measured by population estimates for 2100, is strongly related to their estimated migration propensity. Long-term conservation strategies likely will require a multi-pronged response including a reduction of malaria threats, habitat restoration and continued landscape-level access to seasonally variable nectar resources.

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TL;DR: Stable isotopic evidence suggested that Dacrydium seedlings are more efficient in inorganic nitrogen acquisition than Lithocarpus seedlings, and the results suggested that PSFs contributed to the maintenance of the conifer dominance in the tropical montane forest.
Abstract: We investigated consequences of plant–soil feedbacks (PSFs) in a tropical montane forest on Mt. Kinabalu in Borneo by measurements of light and soil conditions, ecophysiological analyses of tree seedlings, a long-term adult and seedling census, and a simple simulation model. The study plot (2.74 ha) is in a mixed conifer–broadleaf forest with 24% relative basal area of conifers. First, we investigated light and soil conditions beneath two dominant species, a conifer Dacrydium gracilis (Podocarpaceae, arbuscular mycorrhizal tree) and a broadleaf Lithocaprus clementianus (Fagaceae, ectomycorrhizal tree). The relative light intensity was marginally higher beneath Dacrydium tree crown than beneath Lithocarpus tree crown. The concentrations of inorganic nitrogen and labile phosphorus, and the nitrogen mineralization rate, were lower beneath Dacrydium than beneath Lithocarpus, suggesting that soils beneath Dacrydium were more nutrient deficient. Microscopic observations confirmed that conifer seedlings (including Dacrydium) harbored arbuscular mycorrhizal fungi. In addition, a molecular analysis showed that root-associated mycorrhizal fungal communities were clearly different between conifer and broadleaf seedlings, and consequently, nutrient acquisition capacity of seedlings may be different between them. Indeed, stable isotopic evidence suggested that Dacrydium seedlings are more efficient in inorganic nitrogen acquisition than Lithocarpus seedlings. These results predicted that the conifer seedlings would out-compete broadleaf seedlings and have a greater advantage beneath the conifer canopy. To test the possible advantage of conifer seedlings in performance, we developed hierarchical Bayesian models and estimated growth and mortality rates using the seedling census data during 2006–2012. We found that conifer seedlings performed better than broadleaf seedlings beneath Dacrydium canopy. On the other hand, broadleaf seedlings performed better than conifer seedlings beneath Lithocarpus canopy. The consequences of the PSFs for the tree community composition were investigated by developing a simple simulation model, and were compared with the results of a model without PSFs. After a 10 000-year simulation, the relative abundance of conifers with PSFs converged to 22%, which was consistent with the actual abundance; the model without effects of PSFs predicted a relative abundance of only ~10%. The results suggested that PSFs contributed to the maintenance of the conifer dominance in the tropical montane forest.

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TL;DR: This research provides a well-considered definition of “concept,” a basis for defining a normative set of concepts expected to be known to all ecologists, and a measure of familiarity but, more importantly, a measures of usage by contemporary ecologists who were members of ESA.
Abstract: On the occasion of the Ecological Society of America's centennial, we sought to learn which ecological concepts members value in terms of their utility. This required defining “concept,” and selecting concepts from current ecology textbooks that might arguably belong to a normative set. All ESA members were invited to participate in an online survey in October 2014 in which they rated 70, randomly selected concepts (out of a total set of 131) in terms of utility. Alternative to rating, respondents could mark the concept as unfamiliar. Respondents were also able list concepts that were important to them that were not encountered in the survey. Fifteen percent (1324) of the ESA membership participated in the survey. Of these, 89% were addressed in North America, 62% were male, 77% held Ph.D. degrees, 67% were involved in academia through employment or as students, and about one-half of the total were divided between community and ecosystem ecology domains of interest. The 10 highest ranked concepts (in descending order) for utility were scales (small, local, regional, global, etc.), ecosystem, habitat, species, disturbance/perturbation, organism, population, community, competition, and species life history. The 10 lowest ranked concepts (in descending order) for utility were Lotka-Volterra predator–prey/competition models, Allee effect, nutrient spiraling, character displacement, doubling time, climax, Hardy-Weinberg equation, red queen hypothesis, chemoautotroph/chemoautotrophy, and mimicry. Respondents entered 2800 terms not encountered in the survey. After parsing for concepts missed due to the survey's random presentation process, for semantic redundancy and for terms deemed non-concepts, 119 candidate concepts emerged. Many of these deserve consideration for inclusion in a normative set and introduction in textbooks. This research provides a well-considered definition of “concept,” a basis for defining a normative set of concepts expected to be known to all ecologists, and a measure of familiarity but, more importantly, a measure of usage by contemporary ecologists who were members of ESA. These results help us to understand ourselves and our science, to better teach ecology, to guide the initiatives of the collective ecological community, and to further explore the extent and intellectual structure of the principal concepts by which ecologists pursue their work.

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TL;DR: In this paper, the authors examined landscape soil biogeochemistry of ~ 1100 sites in context of hydroperiod, spatial and temporal trends in water quality from the 1940′s through present, elevation, and vegetation communities.
Abstract: Typically, restoration goals target a point in history, i.e., pre-human influence state, however, ecosystems are dynamic and restoration goals must consider the potential evolution of the system, along with primary causes of landscape degradation and the resultant resilience. Using the Everglades as a case study, known disturbances were linked to biogeochemical and vegetation patterns to compare the divergence of the anthropogenically impacted landscape from that expected during natural peatland evolution. Specifically, landscape soil biogeochemistry of ~ 1100 sites was examined in context of hydroperiod, spatial and temporal trends in water quality from the 1940′s through present, elevation, and vegetation communities. This provided a link between carbon (C) accumulation and the influence of anthropogenic alterations. The network of canals created to manage water resulted in a greater ratio of surface water to rainfall contribution to the water budget, restored connectivity of groundwater to surface water, and facilitated overdrainage and mineral and nutrient enrichment of the ecosystem, causing multiple regime shifts and evidence of C loss. This study suggests that restoration can promote the accumulation of minerotrophic peats, but it is difficult to recreate the trajectory towards the ombrotrophic peatland, one of the end members and most C rich portions of the ecosystem, given changes in source waters and connectivity. In addition, a comparison with the literature and paleoecological data confirmed that while phosphorus (P) and C accumulation are positively related, even relatively small increases in P content reduced the proportional C content of peat soils. Overall, this study highlights the need to consider the potential natural trajectories of landscape development, the multiple coexisting resultant regimes, and the importance of soil biogeochemical properties when establishing and prioritizing restoration goals. Given the resilience and feedback loops of the anthropogenically impacted areas, active management of these areas may be necessary if we are to restore the vegetation community composition and biogeochemical characteristics to those of natural regimes, however, some legacy effects will constrain future restoration efforts. This article is protected by copyright. All rights reserved.