Showing papers in "Ecology Letters in 2004"

The metacommunity concept: a framework for multi-scale community ecology

Abstract: The metacommunity concept is an important way to think about linkages between different spatial scales in ecology. Here we review current understanding about this concept. We first investigate issues related to its definition as a set of local communities that are linked by dispersal of multiple potentially interacting species. We then identify four paradigms for metacommunities: the patch-dynamic view, the species-sorting view, the mass effects view and the neutral view, that each emphasizes different processes of potential importance in metacommunities. These have somewhat distinct intellectual histories and we discuss elements related to their potential future synthesis. We then use this framework to discuss why the concept is useful in modifying existing ecological thinking and illustrate this with a number of both theoretical and empirical examples. As ecologists strive to understand increasingly complex mechanisms and strive to work across multiple scales of spatio-temporal organization, concepts like the metacommunity can provide important insights that frequently contrast with those that would be obtained with more conventional approaches based on local communities alone.

Conceptual issues in local adaptation

Abstract: Studies of local adaptation provide important insights into the power of natural selection relative to gene flow and other evolutionary forces. They are a paradigm for testing evolutionary hypotheses about traits favoured by particular environmental factors. This paper is an attempt to summarize the conceptual framework for local adaptation studies. We first review theoretical work relevant for local adaptation. Then we discuss reciprocal transplant and common garden experiments designed to detect local adaptation in the pattern of deme · habitat interaction for fitness. Finally, we review research questions and approaches to studying the processes of local adaptation ‐ divergent natural selection, dispersal and gene flow, and other processes affecting adaptive differentiation of local demes. We advocate multifaceted approaches to the study of local adaptation, and stress the need for experiments explicitly addressing hypotheses about the role of particular ecological and genetic factors that promote or hinder local adaptation. Experimental evolution of replicated populations in controlled spatially heterogeneous environments allow direct tests of such hypotheses, and thus would be a valuable way to complement research on natural populations.

A new statistical approach for assessing similarity of species composition with incidence and abundance data

Abstract: The classic Jaccard and Sorensen indices of compositional similarity (and other indices that depend upon the same variables) are notoriously sensitive to sample size, especially for assemblages with numerous rare species. Further, because these indices are based solely on presence–absence data, accurate estimators for them are unattainable. We provide a probabilistic derivation for the classic, incidence-based forms of these indices and extend this approach to formulate new Jaccard-type or Sorensen-type indices based on species abundance data. We then propose estimators for these indices that include the effect of unseen shared species, based on either (replicated) incidence- or abundancebased sample data. In sampling simulations, these new estimators prove to be considerably less biased than classic indices when a substantial proportion of species are missing from samples. Based on species-rich empirical datasets, we show how incorporating the effect of unseen shared species not only increases accuracy but also can change the interpretation of results.

Confronting a biome crisis: global disparities of habitat loss and protection

Abstract: Human impacts on the natural environment have reached such proportions that in addition to an extinction crisis, we now also face a broader biome crisis. Here we identify the world’s terrestrial biomes and, at a finer spatial scale, ecoregions in which biodiversity and ecological function are at greatest risk because of extensive habitat conversion and limited habitat protection. Habitat conversion exceeds habitat protection by a ratio of 8 : 1 in temperate grasslands and Mediterranean biomes, and 10 : 1 in more than 140 ecoregions. These regions include some of the most biologically distinctive, species rich ecosystems on Earth, as well as the last home of many threatened and endangered species. Confronting the biome crisis requires a concerted and comprehensive response aimed at protecting not only species, but the variety of landscapes, ecological interactions, and evolutionary pressures that sustain biodiversity, generate ecosystem services, and evolve new species in the future.

A meta‐analysis of biotic resistance to exotic plant invasions

Abstract: Biotic resistance describes the ability of resident species in a community to reduce the success of exotic invasions. Although resistance is a well-accepted phenomenon, less clear are the processes that contribute most to it, and whether those processes are strong enough to completely repel invaders. Current perceptions of strong, competition-driven biotic resistance stem from classic ecological theory, Elton’s formulation of ecological resistance, and the general acceptance of the enemies-release hypothesis. We conducted a meta-analysis of the plant invasions literature to quantify the contribution of resident competitors, diversity, herbivores and soil fungal communities to biotic resistance. Results indicated large negative effects of all factors except fungal communities on invader establishment and performance. Contrary to predictions derived from the natural enemies hypothesis, resident herbivores reduced invasion success as effectively as resident competitors. Although biotic resistance significantly reduced the establishment of individual invaders, we found little evidence that species interactions completely repelled invasions. We conclude that ecological interactions rarely enable communities to resist invasion, but instead constrain the abundance of invasive species once they have successfully established.

The role of spatial scale and the perception of large‐scale species‐richness patterns

Abstract: Despite two centuries of exploration, our understanding of factors determining the distribution of life on Earth is in many ways still in its infancy. Much of the disagreement about governing processes of variation in species richness may be the result of differences in our perception of species-richness patterns. Until recently, most studies of large-scale species-richness patterns assumed implicitly that patterns and mechanisms were scale invariant. Illustrated with examples and a quantitative analysis of published data on altitudinal gradients of species richness (n = 204), this review discusses how scale effects (extent and grain size) can influence our perception of patterns and processes. For example, a hump-shaped altitudinal species-richness pattern is the most typical (c. 50%), with a monotonic decreasing pattern (c. 25%) also frequently reported, but the relative distribution of patterns changes readily with spatial grain and extent. If we are to attribute relative impact to various factors influencing species richness and distribution and to decide at which point along a spatial and temporal continuum they act, we should not ask only how results vary as a function of scale but also search for consistent patterns in these scale effects. The review concludes with suggestions of potential routes for future analytical exploration of species-richness patterns.

Is invasion success explained by the enemy release hypothesis

Abstract: A recent trend in invasion ecology relates the success of non-indigenous species (NIS) to reduced control by enemies such as pathogens, parasites and predators (i.e. the enemy release hypothesis, ERH). Despite the demonstrated importance of enemies to host population dynamics, studies of the ERH are split – biogeographical analyses primarily show a reduction in the diversity of enemies in the introduced range compared with the native range, while community studies imply that NIS are no less affected by enemies than native species in the invaded community. A broad review of the invasion literature implies at least eight non-exclusive explanations for this enigma. In addition, we argue that the ERH has often been accepted uncritically wherever (i) NIS often appear larger, more fecund, or somehow ‘better’ than either congeners in the introduced region, or conspecifics in the native range; and (ii) known enemies are conspicuously absent from the introduced range. However, all NIS, regardless of their abundance or impact, will lose natural enemies at a biogeographical scale. Given the complexity of processes that underlie biological invasions, we argue against a simple relationship between enemy ‘release’ and the vigour, abundance or impact of NIS.

The behavioural ecology of personality: consistent individual differences from an adaptive perspective

Abstract: Individual humans, and members of diverse other species, show consistent differences in aggressiveness, shyness, sociability and activity. Such intraspecific differences in behaviour have been widely assumed to be non-adaptive variation surrounding (possibly) adaptive population-average behaviour. Nevertheless, in keeping with recent calls to apply Darwinian reasoning to ever-finer scales of biological variation, we sketch the fundamentals of an adaptive theory of consistent individual differences in behaviour. Our thesis is based on the notion that such ‘personality differences’ can be selected for if fitness payoffs are dependent on both the frequencies with which competing strategies are played and an individual's behavioural history. To this end, we review existing models that illustrate this and propose a game theoretic approach to analyzing personality differences that is both dynamic and state-dependent. Our motivation is to provide insights into the evolution and maintenance of an apparently common animal trait: personality, which has far reaching ecological and evolutionary implications.

A comprehensive framework for global patterns in biodiversity

Abstract: The present study proposes to reconcile the different spatial and temporal scales of regional species production and local constraint on species richness. Although interactions between populations rapidly achieve equilibrium and limit membership in ecological communities locally, these interactions occur over heterogeneous environments within large regions, where the populations of species are stably regulated through competition and habitat selection. Consequently, exclusion of species from a region depends on long-term regional-scale environmental change or evolutionary change among interacting populations, bringing species production and extinction onto the same scale and establishing a link between local and regional processes.

Detritus, trophic dynamics and biodiversity

Abstract: Traditional approaches to the study of food webs emphasize the transfer of local primary productivity in the form of living plant organic matter across trophic levels. However, dead organic matter, or detritus, a common feature of most ecosystems plays a frequently overlooked role as a dynamic heterogeneous resource and habitat for many species. We develop an integrative framework for understanding the impact of detritus that emphasizes the ontogeny and heterogeneity of detritus and the various ways that explicit inclusion of detrital dynamics alters generalizations about the structure and functioning of food webs. Through its influences on food web composition and dynamics, detritus often increases system stability and persistence, having substantial effects on trophic structure and biodiversity. Inclusion of detrital heterogeneity in models of food web dynamics is an essential new direction for ecological research.

Predictions and tests of climate‐based hypotheses of broad‐scale variation in taxonomic richness

Abstract: Broad-scale variation in taxonomic richness is strongly correlated with climate. Many mechanisms have been hypothesized to explain these patterns; however, testable predictions that would distinguish among them have rarely been derived. Here, we examine several prominent hypotheses for climate–richness relationships, deriving and testing predictions based on their hypothesized mechanisms. The ‘energy–richness hypothesis’ (also called the ‘more individuals hypothesis’) postulates that more productive areas have more individuals and therefore more species. More productive areas do often have more species, but extant data are not consistent with the expected causal relationship from energy to numbers of individuals to numbers of species. We reject the energy–richness hypothesis in its standard form and consider some proposed modifications. The ‘physiological tolerance hypothesis’ postulates that richness varies according to the tolerances of individual species for different sets of climatic conditions. This hypothesis predicts that more combinations of physiological parameters can survive under warm and wet than cold or dry conditions. Data are qualitatively consistent with this prediction, but are inconsistent with the prediction that species should fill climatically suitable areas. Finally, the ‘speciation rate hypothesis’ postulates that speciation rates should vary with climate, due either to faster evolutionary rates or stronger biotic interactions increasing the opportunity for evolutionary diversification in some regions. The biotic interactions mechanism also has the potential to amplify shallower, underlying gradients in richness. Tests of speciation rate hypotheses are few (to date), and their results are mixed.

Hazardous duty pay and the foraging cost of predation

Abstract: We review the concepts and research associated with measuring fear and its consequences for foraging. When foraging, animals should and do demand hazardous duty pay. They assess a foraging cost of predation to compensate for the risk of predation or the risk of catastrophic injury. Similarly, in weighing foraging options, animals tradeoff food and safety. The foraging cost of predation can be modelled, and it can be quantitatively and qualitatively measured using risk titrations. Giving-up densities (GUDs) in depletable food patches and the distribution of foragers across safe and risky feeding opportunities are two frequent experimental tools for titrating food and safety. A growing body of literature shows that: (i) the cost of predation can be big and comprise the forager’s largest foraging cost, (ii) seemingly small changes in habitat or microhabitat characteristics can lead to large changes in the cost of predation, and (iii) a forager’s cost of predation rises with risk of mortality, the forager’s energy state and a decrease in its marginal value of energy. In titrating for the cost of predation, researchers have investigated spatial and temporal variation in risk, scale-dependent variation in risk, and the role of predation risk in a forager’s ecology. A risk titration from a feeding animal often provides a more accurate behavioural indicator of predation risk than direct observations of predator-inflicted mortality. Titrating for fear responses in foragers has some well-established applications and holds promise for novel methodologies, concepts and applications. Future directions for expanding conceptual and empirical tools include: what are the consequences of foraging costs arising from interference behaviours and other sources of catastrophic loss? Are there alternative routes by which organisms can respond to tradeoffs of food and safety? What does an animal’s landscape of fear look like as a spatially explicit map, and how do various environmental factors affect it? Behavioural titrations will help to illuminate these issues and more.

Trophic cascades : the primacy of trait-mediated indirect interactions

Abstract: Trophic cascades are textbook examples of predator indirect effects on ecological systems. Yet there is considerable debate about their nature, strength and overall importance. This debate stems in part from continued uncertainty about the ultimate mechanisms driving cascading effects. We present a synthesis of empirical evidence in support of one possible ultimate mechanism: the foraging-predation risk trade-offs undertaken by intermediary species. We show that simple trade-off behaviour can lead to both positive and negative indirect effects of predators on plant resources and hence can explain considerable contingency on the nature and strength of cascading effects among systems. Thus, predicting the sign and strength of indirect effect simply requires knowledge of habitat and resource use by prey with regard to predators presence, habitat use and hunting mode. The synthesis allows us to postulate a hypothesis for new conceptualization of trophic cascades which is to be viewed as an ultimate trade-off between intervening species. In this context, different predators apply different rules of engagement based on their hunting mode and habitat use. These different rules then determine whether behavioural effects persist or attenuate at the level of the food chain.

The spatial spread of invasions: new developments in theory and evidence

Abstract: We review and synthesize recent developments in the study of the spread of invasive species, emphasizing both empirical and theoretical approaches. Recent theoretical work has shown that invasive species spread is a much more complex process than the classical models suggested, as long range dispersal events can have a large influence on the rate of range expansion through time. Empirical work goes even further, emphasizing the role of spatial heterogeneity, temporal variability, other species, and evolution. As in some of the classic work on spread, the study of range expansion of invasive species provides unique opportunities to use differences between theory and data to determine the important underlying processes that control spread rates.

Neutral theory and community ecology

Abstract: I review the mathematical and biological aspects of Hubbell’s (2001) neutral theory of species abundance for ecological communities, and clarify its historical connections with closely related approaches in population genetics. A selective overview of the empirical evidence for and against this theory is provided, with a special emphasis on tropical plant communities. The neutral theory predicts many of the basic patterns of biodiversity, confirming its heuristic power. The strict assumption of equivalence that defines neutrality, equivalence among individuals, finds little empirical support in general. However, a weaker assumption holds for stable communities, the equivalence of average fitness among species. One reason for the surprising success of the neutral theory is that all the theories of species coexistence satisfying the fitness equivalence assumption, including many theories of niche differentiation, generate exactly the same patterns as the neutral theory. Hubbell’s neutral theory represents an important synthesis and a much needed demonstration of the pivotal role of intraspecific variability in ecology. Further improvements should lead to an explicit linking to niche-based processes. This research programme will depend crucially on forthcoming theoretical and empirical achievements.

Why environmental scientists are becoming Bayesians

Abstract: Advances in computational statistics provide a general framework for the high-dimensional models typically needed for ecological inference and prediction. Hierarchical Bayes (HB) represents a modelling structure with capacity to exploit diverse sources of information, to accommodate influences that are unknown (or unknowable), and to draw inference on large numbers of latent variables and parameters that describe complex relationships. Here I summarize the structure of HB and provide examples for common spatiotemporal problems. The flexible framework means that parameters, variables and latent variables can represent broader classes of model elements than are treated in traditional models. Inference and prediction depend on two types of stochasticity, including (1) uncertainty, which describes our knowledge of fixed quantities, it applies to all ‘unobservables’ (latent variables and parameters), and it declines asymptotically with sample size, and (2) variability, which applies to fluctuations that are not explained by deterministic processes and does not decline asymptotically with sample size. Examples demonstrate how different sources of stochasticity impact inference and prediction and how allowance for stochastic influences can guide research.

Trade‐offs in community ecology: linking spatial scales and species coexistence

Abstract: Trade-offs in species performances of different ecological functions is one of the most common explanations for coexistence in communities. Despite the potential for species coexistence occurring at local or regional spatial scales, trade-offs are typically approached at a single scale. In recent years, ecologists have increasingly provided evidence for the importance of community processes at both local and regional spatial scales. This review summarizes the theoretical predictions for the traits associated with trade-offs under different conditions and at different spatial scales. We provide a spatial framework for understanding trade-offs, coexistence and the supportive empirical evidence. Predictions are presented that link the patterns of diversity observed to the patterns of trade-offs that lead to coexistence at different spatial scales. Recent evidence for the evolution of trade-offs under different conditions is provided which explores both laboratory microcosm studies and phylogenetic tests. Examining trade-offs within a spatial framework can provide a strong approach to understanding community structure and dynamics, while explaining patterns of species diversity.

The area requirements of an ecosystem service: crop pollination by native bee communities in California

Abstract: Managing ecosystem services is critical to human survival, yet we do not know how large natural areas must be to support these services. We investigated how crop pollination services provided by native, unmanaged, bee communities varied on organic and conventional farms situated along a gradient of isolation from natural habitat. Pollination services from native bees were significantly, positively related to the proportion of upland natural habitat in the vicinity of farm sites, but not to any other factor studied, including farm type, insecticide usage, field size and honeybee abundance. The scale of this relationship matched bee foraging ranges. Stability and predictability of pollination services also increased with increasing natural habitat area. This strong relationship between natural habitat area and pollination services was robust over space and time, allowing prediction of the area needed to produce a given level of pollination services by wild bees within this landscape.

Carbon input to soil may decrease soil carbon content

Abstract: It is commonly predicted that the intensity of primary production and soil carbon (C) content are positively linked. Paradoxically, many long-term field observations show that although plant litter is incorporated to soil in large quantities, soil C content does not necessarily increase. These results suggest that a negative relationship between C input and soil C conservation exists. Here, we demonstrate in controlled conditions that the supply of fresh C may accelerate the decomposition of soil C and induce a negative C balance. We show that soil C losses increase when soil microbes are nutrient limited. Results highlight the need for a better understanding of microbial mechanisms involved in the complex relationship between C input and soil C sequestration. We conclude that energy available to soil microbes and microbial competition are important determinants of soil C decomposition.

Bayesian inference in ecology

Abstract: Bayesian inference is an important statistical tool that is increasingly being used by ecologists. In a Bayesian analysis, information available before a study is conducted is summarized in a quantitative model or hypothesis: the prior probability distribution. Bayes Theorem uses the prior probability distribution and the likelihood of the data to generate a posterior probability distribution. Posterior probability distributions are an epistemological alternative to P-values and provide a direct measure of the degree of belief that can be placed on models, hypotheses, or parameter estimates. Moreover, Bayesian information-theoretic methods provide robust measures of the probability of alternative models, and multiple models can be averaged into a single model that reflects uncertainty in model construction and selection. These methods are demonstrated through a simple worked example. Ecologists are using Bayesian inference in studies that range from predicting single-species population dynamics to understanding ecosystem processes. Not all ecologists, however, appreciate the philosophical underpinnings of Bayesian inference. In particular, Bayesians and frequentists differ in their definition of probability and in their treatment of model parameters as random variables or estimates of true values. These assumptions must be addressed explicitly before deciding whether or not to use Bayesian methods to analyse ecological data.

Limited filling of the potential range in European tree species

Abstract: The relative roles of environment and history in controlling large-scale species distributions are important not only theoretically, but also for forecasting range responses to climatic change. Here, we use atlas data to examine the extent to which 55 tree species fill their climatically determined potential ranges in Europe. Quantifying range filling (R/P) as realized/potential range size ratios using bioclimatic envelope modelling we find mean R/P = 38.3% (±30.3% SD). Many European tree species naturalize extensively outside their native ranges, providing support for interpreting the many low R/Ps as primarily reflecting dispersal limitation. R/P increases strongly with latitudinal range centroid and secondarily with hardiness and decreases weakly with longitudinal range centroid. Hence, European tree species ranges appear strongly controlled by geographical dispersal constraints on post-glacial expansion as well as climate. Consequently, we expect European tree species to show only limited tracking of near-future climate changes.

Tree–grass coexistence in savannas revisited – insights from an examination of assumptions and mechanisms invoked in existing models

Abstract: Several explanations for the persistence of tree–grass mixtures in savannas have been advanced thus far. In general, these either concentrate on competition-based mechanisms, where niche separation with respect to limiting resources such as water lead to tree–grass coexistence, or demographic mechanisms, where factors such as fire, herbivory and rainfall variability promote tree–grass persistence through their dissimilar effects on different life-history stages of trees. Tests of these models have been largely site-specific, and although different models find support in empirical data from some savanna sites, enough dissenting evidence exists from others to question their validity as general mechanisms of tree–grass coexistence. This lack of consensus on determinants of savanna structure and function arises because different models: (i) focus on different demographic stages of trees, (ii) focus on different limiting factors of tree establishment, and (iii) emphasize different subsets of the potential interactions between trees and grasses. Furthermore, models differ in terms of the most basic assumptions as to whether trees or grasses are the better competitors. We believe an integration of competition-based and demographic approaches is required if a comprehensive model that explains both coexistence and the relative productivity of the tree and grass components across the diverse savannas of the world is to emerge. As a first step towards this end, we outline a conceptual framework that integrates existing approaches and applies them explicitly to different life-history stage of trees.

Mechanisms of disease-induced extinction

Abstract: Parasites are important determinants of ecological dynamics. Despite the widespread perception that parasites (in the broad sense, including microbial pathogens) threaten species with extinction, the simplest deterministic models of parasite dynamics (i.e. of specialist parasites with density-dependent transmission) predict that parasites will always go extinct before their hosts. We review the primary theoretical mechanisms that allow disease-induced extinction and compare them with the empirical literature on parasitic threats to populations to assess the importance of different mechanisms in threatening natural populations. Small pre-epidemic population size and the presence of reservoirs are the most commonly cited factors for disease-induced extinction in empirical studies.

Arbuscular mycorrhizae and terrestrial ecosystem processes

Abstract: Arbuscular mycorrhizal fungi (AMF; phylum Glomeromycota) are ubiquitous in terrestrial ecosystems. Despite their acknowledged importance in ecology, most research on AMF has focused on effects on individual plant hosts, with more recent efforts aimed at the level of the plant community. Research at the ecosystem level is less prominent, but potentially very promising. Numerous human-induced disturbances (including global change and agro-ecosystem management) impinge on AMF functioning; hence study of this symbiosis from the ecosystem perspective seems timely and crucial. In this paper, I discuss four (interacting) routes via which AMF can influence ecosystem processes. These include indirect pathways (through changes in plant and soil microbial community composition), and direct pathways (effects on host physiology and resource capture, and direct mycelium effects). I use the case study of carbon cycling to illustrate the potentially pervasive influence of AMF on ecosystem processes. A limited amount of published research on AMF ecology is suited for direct integration into ecosystem studies (because of scale mismatch or ill-adaptation to the ‘pools and flux’ paradigm of ecosystem ecology); I finish with an assessment of the tools (experimental designs, response variables) available for studying mycorrhizae at the ecosystem scale.

Quantifying the effects of fisheries on threatened species: the impact of pelagic longlines on loggerhead and leatherback sea turtles

Abstract: The depletion of fish stocks from global fisheries has been a long-standing concern. More recently, incidental catch of non-target (termed bycatch) vertebrates also has been proposed as a serious conservation issue. Here we present a bycatch assessment for loggerhead and leatherback sea turtles that are incidentally caught by global pelagic longlines. We integrate catch data from over 40 nations and bycatch data from 13 international observer programmes. Despite infrequent rates of encounter, our analyses show that more than 200 000 loggerheads and 50 000 leatherbacks were likely taken as pelagic longline bycatch in 2000. Our analyses suggest that thousands of these turtles die each year from longline gear in the Pacific Ocean alone. Given 80‐95% declines for Pacific loggerhead and leatherback populations over the last 20 years, this bycatch level is not sustainable. Adopting a large-scale, synthetic approach is critical to accurately characterize the influence of global fisheries bycatch on globally distributed and imperilled pelagic vertebrates.

Experimental warming causes large and rapid species loss, dampened by simulated grazing, on the Tibetan Plateau

Abstract: We investigated the independent and combined effects of experimental warming and grazing on plant species diversity on the north-eastern Tibetan Plateau, a region highly vulnerable to ongoing climate and land use changes. Experimental warming caused a 26–36% decrease in species richness, a response that was generally dampened by experimental grazing. Higher species losses occurred at the drier sites where N was less available. Moreover, we observed an indirect effect of climate change on species richness as mediated by plant–plant interactions. Heat stress and warming-induced litter accumulation are potential explanations for the species responses to experimental warming. This is the first reported experimental evidence that climate warming could cause dramatic declines in plant species diversity in high elevation ecosystems over short time frames and supports model predictions of species losses with anthropogenic climate change.

Intraguild predation: a widespread interaction related to species biology

Abstract: Intraguild predation (IGP), defined as killing and eating among potential competitors, seems to be a ubiquitous interaction, differing from competition or predation. In the present study we assess the frequency of IGP among 763 potential intraguild prey and 599 potential intraguild predators. Our results indicate that IGP is common in nature, reaching frequencies between 58.4 and 86.7%. A null model suggests that IGP in different groups of predators and prey (i.e. carnivores, omnivores, herbivores, detritivores, or top and intermediate species) have different deviations from a chance expectation, indicating these attributes of species biology as main determinants of IGP persistence. We suggest that IGP satisfies two basic requirements to be considered as important to the trophic structuring of communities. First, its occurrence is not random, rather it is associated with well-defined attributes of species biology, and secondly, it is a widespread interaction.

Moving from pattern to process: Coexistence mechanisms under intermediate disturbance regimes

Abstract: Coexistence mechanisms that require environmental variation to operate contribute importantly to the maintenance of biodiversity. One famous hypothesis of diversity maintenance under disturbance is the intermediate disturbance hypothesis (IDH). The IDH proposes patterns of peaked diversity under intermediate disturbance regimes, based on a tension between competitively superior species and species which can rapidly colonize following disturbance. We review the literature, and describe recent research that suggests that more than one underlying mechanism can generate this unimodal diversity pattern in disturbed environments. Several exciting emerging research areas are identified, including interactions between disturbance types, operation of the IDH in multi-trophic systems, and changes in disturbance regimes. However, empirical work is still focussed on describing the IDH pattern, with little emphasis on identifying its mechanistic basis. We discuss how to extend methods for identifying different coexistence mechanisms, developed in the theoretical literature, to experimental research. In an attempt to operationalize these various ideas we outline a hypothetical IDH research programme. A solid understanding of the life history attributes of the component species and their responses to disturbance will facilitate identification of the coexistence mechanism(s) underlying the IDH pattern, and provide a framework by which empirical and theoretical results can be more fully integrated.

Shifting baselines and the decline of pelagic sharks in the Gulf of Mexico

Abstract: Historical abundances of many large marine vertebrates were tremendously greater than today. However, while pelagic sharks are known to have declined rapidly in the northwest Atlantic in recent years, there, as elsewhere, little is known about the former natural abundances of these species. Here, we compare initial (1950s) and recent (late1990s) standardized catch rates of pelagic sharks in the Gulf of Mexico, the area where methods of exploitation between these two periods were most comparable. We estimate that oceanic whitetip and silky sharks, formerly the most commonly caught shark species, have declined by over 99 and 90%, respectively. That the former prevalence of oceanic whitetip sharks in this ecosystem is unrecognized today is clear evidence of shifting baselines. Our analysis provides the missing baseline for pelagic sharks in the Gulf of Mexico that is needed for the rational management and restoration of these species.

Coral reef cascades and the indirect effects of predator removal by exploitation

Abstract: Fisheries exploitation provides the opportunity to examine the ecosystem-scale biodiversity consequences of predator removal. We document predatory reef fish densities, coral-eating starfish densities and coral reef structure along a 13-island gradient of subsistence exploitation in Fiji. Along the fishing intensity gradient, predator densities declined by 61% and starfish densities increased by three orders of magnitude. Reefbuilding corals and coralline algae declined by 35% and were replaced by non-reef building taxa (mainly filamentous algae), as a result of starfish predation. Starfish populations exhibited thresholds and Allee-type dynamics: population growth was negative under light fishing intensities and high predator densities, and positive on islands with higher fishing intensities and low predator densities. These results suggest the depletion of functionally important consumer species by exploitation can indirectly influence coral reef ecosystem structure and function at the scale of islands.