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Showing papers in "Journal of Applied Ecology in 2007"


Journal ArticleDOI
TL;DR: In this paper, a large-scale study of 25 agricultural landscapes in seven European countries, the authors investigated relationships between species richness in several taxa, and the links between biodiversity and landscape structure and management.
Abstract: Summary 1. In many European agricultural landscapes, species richness is declining considerably. Studies performed at a very large spatial scale are helpful in understanding the reasons for this decline and as a basis for guiding policy. In a unique, large-scale study of 25 agricultural landscapes in seven European countries, we investigated relationships between species richness in several taxa, and the links between biodiversity and landscape structure and management. 2. We estimated the total species richness of vascular plants, birds and five arthropod groups in each 16-km 2 landscape, and recorded various measures of both landscape structure and intensity of agricultural land use. We studied correlations between taxonomic groups and the effects of landscape and land-use parameters on the number of species in different taxonomic groups. Our statistical approach also accounted for regional variation in species richness unrelated to landscape or land-use factors. 3. The results reveal strong geographical trends in species richness in all taxonomic groups. No single species group emerged as a good predictor of all other species groups. Species richness of all groups increased with the area of semi-natural habitats in the landscape. Species richness of birds and vascular plants was negatively associated with fertilizer use. 4. Synthesis and applications. We conclude that indicator taxa are unlikely to provide an effective means of predicting biodiversity at a large spatial scale, especially where there is large biogeographical variation in species richness. However, a small list of landscape and land-use parameters can be used in agricultural landscapes to infer large-scale patterns of species richness. Our results suggest that to halt the loss of biodiversity in these landscapes, it is important to preserve and, if possible, increase the area of semi-natural habitat.

624 citations


Journal ArticleDOI
TL;DR: The general simulation approach presented in this paper for identifying the most parsimonious model, as defined by information theory, should help to improve the understanding of the reliability of model selection when using AIC, and help the development of better selection rules.
Abstract: Summary 1. The ability to identify key ecological processes is important when solving applied problems. Increasingly, ecologists are adopting Akaike's information criterion (AIC) as a metric to help them assess and select among multiple process-based ecological models. Surprisingly, however, it is still unclear how best to incorporate AIC into the selection process in order to address the trade-off between maximizing the probability of retaining the most parsimonious model while minimizing the number of models retained. 2. Ecological count data are often observed to be overdispersed with respect to best-fitting models. Overdispersion is problematic when performing an AIC analysis, as it can result in selection of overly complex models which can lead to poor ecological inference. This paper describes and illustrates two approaches that deal effectively with overdispersion. The first approach involves modelling the causes of overdispersion implicitly using compound probability distributions. The second approach ignores the causes of overdispersion and uses quasi-AIC (QAIC) as a metric for model parsimony. 3. Simulations and a novel method that identifies the most parsimonious model are used to demonstrate the utility of the two overdispersion approaches within the context of two ecological examples. The first example addresses binomial data obtained from a study of fish survival (as related to habitat structure) and the second example addresses Poisson data obtained from a study of flower visitation by nectarivores. 4. Applying either overdispersion approach reduces the chance of selecting overly complex models, and both approaches result in very similar ecological inference. In addition, inference can be made more reliable by incorporating model nesting into the selection process (i.e. identifying which models are special cases of others), as it reduces the number of models selected without significantly reducing the probability of retaining the most parsimonious models. 5. Synthesis and applications. When data are overdispersed, inference can be improved by either modelling the causes of overdispersion or applying QAIC as a metric for model parsimony. Inference can also be improved by adopting a model filtering procedure based on how models are nested. The general simulation approach presented in this paper for identifying the most parsimonious model, as defined by information theory, should help to improve our understanding of the reliability of model selection when using AIC, and help the development of better selection rules.

572 citations


Journal ArticleDOI
TL;DR: The total landscape species richness of all groups was most strongly affected by increased proximity of semi-natural habitat patches and the effect of increased habitat diversity appeared to be of secondary importance to total species richness but caused a shift in the relative contribution of α and β diversity towards the latter.
Abstract: 1. Agricultural intensification poses a serious threat to biodiversity as a consequence of increased land-use intensity, decreased landscape heterogeneity and reduced habitat diversity. Although there is interest in the preservation of total species richness of an agricultural landscape (γ diversity), the effects of intensification have been assessed primarily by species richness at a local scale (α diversity). This ignores species richness between local communities (β diversity), which is an important component of total species richness. 2. In this study, measures of land-use intensity, landscape structure and habitat diversity were related to γ, α and β diversity of wild bees (Apoidea), carabid beetles (Carabidae), hoverflies (Syrphidae), true bugs (Heteroptera) and spiders (Araneae) within 16 local communities in 24 temperate European agricultural landscapes. 3. The total landscape species richness of all groups was most strongly affected by increased proximity of semi-natural habitat patches. Bees also decreased in landscapes with a high intensity of farmland management, demonstrating additive effects of both factors. 4. Separating total species diversity into components, the decrease in total species richness could be attributed primarily to a decrease in species diversity between local communities. Species richness of the local communities of all investigated groups decreased with increasing land-use intensity and, in the case of spiders, decreasing proximity of the semi-natural habitat patches. 5. The effect of increased habitat diversity appeared to be of secondary importance to total species richness but caused a shift in the relative contribution of α and β diversity towards the latter.

539 citations


Journal ArticleDOI
TL;DR: In this paper, the authors evaluated data from more than 70 restoration projects conducted mainly in shallow, eutrophic lakes in Denmark and the Netherlands and found that the strongest effects seemed to be obtained 4-6 years after the start of fish removal.
Abstract: 1. Eutrophication constitutes a serious threat to many European lakes and many approaches have been used during the past 20–30 years to improve lake water quality. Results from the various lake restoration initiatives are diverse and the long-term effects are not well described. 2. In this study we evaluated data from more than 70 restoration projects conducted mainly in shallow, eutrophic lakes in Denmark and the Netherlands. Special focus was given to the removal of zooplanktivorous and benthivorous fish, by far the most common internal lake measure. 3. In more than half of the biomanipulation projects, Secchi depth increased and chlorophyll a decreased to less than 50% within the first few years. In some of the shallow lakes, total phosphorus and total nitrogen levels decreased considerably, indicating an increased retention or loss by denitrification. The strongest effects seemed to be obtained 4–6 years after the start of fish removal. 4. The long-term effect of restoration initiatives can only be described for a few lakes, but data from biomanipulated lakes indicate a return to a turbid state within 10 years or less in most cases. One of reasons for the lack of long-term effects may be internal phosphorus loading from a mobile pool accumulated in the sediment. 5. Synthesis and applications. Lake restoration, and in particular fish removal in shallow eutrophic lakes, has been widely used in Denmark and the Netherlands, where it has had marked effects on lake water quality in many lakes. Long-term effects ( > 8–10 years) are less obvious and a return to turbid conditions is often seen unless fish removal is repeated. Insufficient external loading reduction, internal phosphorus loading and absence of stable submerged macrophyte communities to stabilize the clear-water state are the most probable causes for this relapse to earlier conditions Eutrophication constitutes a serious threat to many European lakes and many approaches have been used during the past 20-30 years to improve lake water quality. Results from the various lake restoration initiatives are diverse and the long-term effects are not well described. In this study we evaluated data from more than 70 restoration projects conducted mainly in shallow, eutrophic lakes in Denmark and the Netherlands. Special focus was given to the removal of zooplanktivorous and benthivorous fish, by far the most common internal lake measure. In more than half of the biomanipulation projects, Secchi depth increased and chlorophyll a decreased to less than 50% within the first few years. In some of the shallow lakes, total phosphorus and total nitrogen levels decreased considerably, indicating an increased retention or loss by denitrification. The strongest effects seemed to be obtained 4-6 years after the start of fish removal. The long-term effect of restoration initiatives can only be described for a few lakes, but data from biomanipulated lakes indicate a return to a turbid state within 10 years or less in most cases. One of reasons for the lack of long-term effects may be internal phosphorus loading from a mobile pool accumulated in the sediment. Synthesis and applications. Lake restoration, and in particular fish removal in shallow eutrophic lakes, has been widely used in Denmark and the Netherlands, where it has had marked effects on lake water quality in many lakes. Long-term effects (> 8-10 years) are less obvious and a return to turbid conditions is often seen unless fish removal is repeated. Insufficient external loading reduction, internal phosphorus loading and absence of stable submerged macrophyte communities to stabilize the clear-water state are the most probable causes for this relapse to earlier conditions.

508 citations


Journal ArticleDOI
TL;DR: It is shown that certain modelling techniques are particularly robust to a moderate level of locational error and that useful predictions of species distributions can be made even when occurrence data include some error.
Abstract: Summary 1. Species distribution modelling is used increasingly in both applied and theoretical research to predict how species are distributed and to understand attributes of species’ environmental requirements. In species distribution modelling, various statistical methods are used that combine species occurrence data with environmental spatial data layers to predict the suitability of any site for that species. While the number of data sharing initiatives involving species’ occurrences in the scientific community has increased dramatically over the past few years, various data quality and methodological concerns related to using these data for species distribution modelling have not been addressed adequately. 2. We evaluated how uncertainty in georeferences and associated locational error in occurrences influence species distribution modelling using two treatments: (1) a control treatment where models were calibrated with original, accurate data and (2) an error treatment where data were first degraded spatially to simulate locational error. To incorporate error into the coordinates, we moved each coordinate with a random number drawn from the normal distribution with a mean of zero and a standard deviation of 5 km. We evaluated the influence of error on the performance of 10 commonly used distributional modelling techniques applied to 40 species in four distinct geographical regions. 3. Locational error in occurrences reduced model performance in three of these regions; relatively accurate predictions of species distributions were possible for most species, even with degraded occurrences. Two species distribution modelling techniques, boosted regression trees and maximum entropy, were the best performing models in the face of locational errors. The results obtained with boosted regression trees were only slightly degraded by errors in location, and the results obtained with the maximum entropy approach were not affected by such errors. 4. Synthesis and applications . To use the vast array of occurrence data that exists currently for research and management relating to the geographical ranges of species, modellers need to know the influence of locational error on model quality and whether some modelling techniques are particularly robust to error. We show that certain modelling techniques are particularly robust to a moderate level of locational error and that useful predictions of species distributions can be made even when occurrence data include some error. Journal of Applied Ecology (2007)

444 citations


Journal ArticleDOI
TL;DR: The extent of crop visitation by wild bees observed in this study is among the highest recorded, and the findings suggest that agri-environment schemes and similar programmes that work through local habitat restoration should target farms in intensively agricultural landscapes to gain maximum conservation benefits.
Abstract: Summary 1 Concern about a global decline in wild pollinators has increased interest in how pollinators are affected by human land use, and how this, in turn, affects crop pollination. 2 We measured wild bee visitation to four summer vegetable crops, and investigated associations between flower visitation rates and land-use intensity at local and landscape scales. We studied 29 farms in New Jersey and Pennsylvania, USA. Over 2 years we recorded >7400 bee visits to crop flowers and identified 54 species of wild bees visiting crops. 3 Wild bees were the dominant flower visitors at three of the four crops studied; domesticated honeybees, Apis mellifera L., provided the remainder of visits. 4 Ordination of the two best studied crops showed that the wild bee species visiting tomato, Solanum lycopersicum L., were distinct from those visiting watermelon, Citrullus lanatus (Thunb.) Matsum. & Nakai. 5 Crop visitation by wild bees was not associated with organic farming, nor with natural habitat cover at either local or landscape scale. 6 Synthesis and applications. The extent of crop visitation by wild bees observed in this study is among the highest recorded. In contrast to previous studies of crop visitation by wild bees, we did not find negative effects of conventional farming or natural habitat loss. In our study system, organic and conventional farms differ little in field size, crop diversity and weedy flower diversity, unlike some systems where organic farms have smaller fields with greater crop and weed diversity. Such variables may be more important than organic vs. conventional farming practices. Second, small patches of natural habitat are dispersed throughout our entire study system, and this habitat heterogeneity may support high bee abundance even in landscapes with a low proportion of natural habitat overall. Our findings suggest that agri-environment schemes and similar programmes that work through local habitat restoration should target farms in intensively agricultural (homogeneous) landscapes to gain maximum conservation benefits.

418 citations


Journal ArticleDOI
TL;DR: The approach provides a unifying framework to understand the contradictory results of previous studies of wolf-human relationships and a template for future studies to evaluate effects of increas ing human activity on wildlife.
Abstract: Summary 1. Resource selection functions (RSF) have contributed to the conservation of species negatively affected by human activities. Despite these applications, two assumptions frequent many studies: the assumption of independence among groups in social species, and that selection is proportional to resource availability. This latter case is known as a functional response in resource selection, and may be especially important in human-wildlife relationships where there is a fitness cost of proximity to humans. 2. Recent advances in generalized linear mixed models offer new ways to account for resource selection in social species and functional responses by accommodating correlations within hierarchical groups with random intercepts, and functional responses with random coefficients. 3. We illustrate the application of mixed-effects RSF models using a case study of resource selection by individual wolves Canis lupus living in packs as a function of human activity. 4. In areas of low human activity, wolf resource selection was independent of proximity to humans. As human activity increased, wolves displayed a functional response selecting areas closer to human activity. With increasing human activity, however, wolves displayed spatio-temporal avoidance of human activity during daylight. This could lead to behaviourally induced trophic cascades mediated by wolf avoidance of human activity, and fits within the framework of attractive sink habitats. 5. Accounting for the hierarchical social structure of wolves clearly showed that the response of wolves to human disturbance was strongly correlated, but different, within packs, and that the correlation was strongest during winter and weakest during summer. 6. Syntheses and applications. Failure to consider the social structure of wolves and the functional response to human activity would result in mistaken conclusions about wolf-human relationships. Our approach provides a unifying framework to understand the contradictory results of previous studies of wolf-human relationships and a template for future studies to evaluate effects of increas ing human activity on wildlife.

379 citations


Journal ArticleDOI
TL;DR: In this paper, the authors quantify how canopy cover and terrain affected GPS collar performance within a mountainous region of northern Idaho, USA, and evaluate different data-screening options for GPS location data from stationary test collars and free-ranging black bears Ursus americanus.
Abstract: Summary 1 Global positioning system (GPS) technology enables researchers to evaluate wildlife movements, space use and resource selection in detail for extended periods of time. Two types of errors, missed location fixes and location error, are inherent to GPS telemetry and can bias location data sets. Habitat characteristics can influence both types of errors, but no studies have reported how continuous ranges of canopy cover and terrain simultaneously affect location error at different positional dilution of precision (PDOP) and signal quality levels. This information can assist in developing a protocol for removing large location errors from GPS data sets. 2 The objectives of this study were to quantify how canopy cover and terrain affected GPS collar performance within a mountainous region of northern Idaho, USA, and evaluate different data-screening options for GPS location data sets from stationary test collars and free-ranging black bears Ursus americanus. 3 The fix rate for test collars was very high in all habitats (mean 99·5%, SE 0·14, range 97·9–100%) and was not related to canopy cover or terrain obstruction. However, habitat variables strongly influenced location error, PDOP values and proportion of three-dimensional (3-D) fixes. The 95% circular error probable (CEP) equalled 106·8 m for locations at all test sites, and varied substantially with canopy cover, terrain obstruction and signal quality categories, ranging from 14·3 m to 557·0 m. Location errors for two-dimensional (2-D) fixes were more variable at higher PDOP values and were significantly larger compared with 3-D fixes. 4 Data screening increased the accuracy of test collar location data sets by removing large location errors that were associated with high PDOP values. Data-screening options that focused on screening 2-D locations were most effective in reducing location error and retaining the greatest number of locations. For black bear data sets, the four data screening options resulted in data reduction ranging from 8% to 35%. 5 Synthesis and applications. We have demonstrated how location data can be analysed and screened based on 2-D and 3-D fixes in relation to PDOP values to eliminate locations with potentially large location errors. This information can be applied to GPS location data for individual animals to increase data accuracy for analyses.

316 citations


Journal ArticleDOI
TL;DR: In this paper, the authors collected spatially independent dung beetle samples from primary, secondary and Eucalyptus plantation forests in north-east Brazilian Amazonia across a large quasi-experimental landscape that minimized confounding edge and fragmentation effects.
Abstract: 1. Secondary and plantation forests are becoming increasingly widespread in the tropics. A recent meta-analysis on the impacts of land-use change on tropical forest dung beetles concluded that regenerating forests can be effective in helping to offset species loss following deforestation. However, our understanding of the extent to which these results can be generalized to new locations remains very poor. 2. We attempted to overcome many of the design limitations that characterize previous studies by collecting spatially independent dung beetle samples from primary, secondary and Eucalyptus plantation forests in north-east Brazilian Amazonia across a large quasi-experimental landscape that minimized confounding edge and fragmentation effects. 3. We recorded 9203 dung beetles, comprising 85 species. Species richness was significantly higher in primary forest and the majority of species were more abundant there than elsewhere, whereas secondary and plantation sites harboured an impoverished subset of primary forest species. 4. Our data illustrate the low value of tropical secondary and plantation forests for dung beetles in our study area, and our conclusions are more pessimistic than those of earlier studies. 5. Because of differences in the order of species rank-abundance and rank-biomass patterns, re-coding community data from abundance to biomass significantly altered the analytical weight of individual species in determining community patterns. Larger bodied beetles were more prone to local extinctions and abundance declines and this effect was consistent both within and between genera. 6. Synthesis and applications. Our study demonstrates that secondary and plantation forests in a large neotropical landscape host exceptionally impoverished dung beetle communities. Furthermore, the depletion of beetle abundance combined with a reduction in average body mass in converted forests is likely to have detrimental consequences for the maintenance of dung beetle-mediated ecosystem services in these habitats. Differences in biogeographical and landscape context, and the influence of common limitations in sampling design, may explain why many other studies have painted a more optimistic picture of the conservation value of anthropogenic habitats. In the absence of further evidence we caution strongly against the claim that forest regeneration schemes on degraded land can effectively offset the loss of species following deforestation, and urge that conservation strategies prioritize the protection of remaining areas of primary forest.

313 citations


Journal ArticleDOI
TL;DR: For example, Nelson et al. as mentioned in this paper employed a least-cost connectivity model to estimate habitatspecific migration rates of bighorn sheep using high-resolution genetic data to infer variation in animal movements.
Abstract: Summary 1 Better tools are needed to predict population connectivity in complex landscapes ‘Least-cost modelling’ is one commonly employed approach in which dispersal costs are assigned to distinct habitat types and the least-costly dispersal paths among habitat patches are calculated using a geographical information system (GIS) Because adequate data on dispersal are usually lacking, dispersal costs are often assigned solely from expert opinion Spatially explicit, high-resolution genetic data may be used to infer variation in animal movements We employ such an approach to estimate habitatspecific migration rates and to develop least-cost connectivity models for desert bighorn sheep Ovis canadensis nelsoni 2 Bighorn sheep dispersal is thought to be affected by distance and topography We incorporated both factors into least-cost GIS models with different parameter values and estimated effective geographical distances among 26 populations We assessed which model was correlated most strongly with gene flow estimates among those populations, while controlling for the effect of anthropogenic barriers We used the bestfitting model to (i) determine whether migration rates are higher over sloped terrain than flat terrain; (ii) predict probable movement corridors; (iii) predict which populations are connected by migration; and (iv) investigate how anthropogenic barriers and translocated populations have affected landscape connectivity 3 Migration models were correlated most strongly with migration when areas of at least 10% slope had 1/10th the cost of areas of lower slope; thus, gene flow occurred over longer distances when ‘escape terrain’ was available Optimal parameter values were consistent across two measures of gene flow and three methods for defining population polygons 4 Anthropogenic barriers disrupted numerous corridors predicted to be high-use dispersal routes, indicating priority areas for mitigation However, population translocations have restored high-use dispersal routes in several other areas Known intermountain movements of bighorn sheep were largely consistent with predicted corridors 5 Synthesis and applications Population genetic data provided sufficient resolution to infer how landscape features influenced the behaviour of dispersing desert bighorn sheep Anthropogenic barriers that block high-use dispersal corridors should be mitigated, but population translocations may help maintain connectivity We conclude that developing least-cost models from similar empirical data could significantly improve the utility of these tools

300 citations


Journal ArticleDOI
TL;DR: This work compared plant-pollinator interactions on four pairs of restored and ancient heathlands 11 and 14 years following initiation of restoration management to demonstrate how a key ecological service can serve as a yardstick for judging restoration success.
Abstract: 1. Attempts to restore damaged ecosystems usually emphasize structural aspects of biodiversity, such as species richness and abundance. An alternative is to emphasize functional aspects, such as patterns of interaction between species. Pollination is a ubiquitous interaction between plants and animals. Patterns in plant-pollinator interactions can be analysed with a food web or complex-systems approach and comparing pollination webs between restored and reference sites can be used to test whether ecological restoration has taken place. 2. Using an ecological network approach, we compared plant-pollinator interactions on four pairs of restored and ancient heathlands 11 and 14 years following initiation of restoration management. We used the network data to test whether visitation by pollinators had been restored and we calculated pollinator importance indices for each insect species on the eight sites. Finally, we compared the robustness of the restored and ancient networks to species loss. 3. Plant and pollinator communities were established successfully on the restored sites. There was little evidence of movement of pollinators from ancient sites onto adjacent restored sites, although paired sites correlated in pollinator species richness in both years. There was little insect species overlap within each heathland between 2001 and 2004. 4. A few widespread insect species dominated the communities and were the main pollinators. The most important pollinators were typically honeybees (Apis mellifera), species of bumblebee (Bombus spp.) and one hoverfly species (Episyrphus balteatus). The interaction networks were significantly less complex on restored heathlands, in terms of connectance values, although in 2004 the low values might reflect the negative relationship between connectance and species richness. Finally, there was a trend of restored networks being more susceptible to perturbation than ancient networks, although this needs to be interpreted with caution. 5. Synthesis and applications. Ecological networks provide a powerful tool for assessing the outcome of restoration programmes. Our results indicate that heathland restoration does not have to occur immediately adjacent to ancient heathland for functional pollinator communities to be established. Moreover, in terms of restoring pollinator interactions, heathland managers need only be concerned with the most common insect species. Our focus on pollination demonstrates how a key ecological service can serve as a yardstick for judging restoration success.

Journal ArticleDOI
TL;DR: The National Bumblebee Nest Survey (NBPS) as discussed by the authors was a structured survey carried out by 719 volunteers in the UK during early summer 2004, where the surveyors used a defined protocol to record the presence or absence of bumblebee nests in prescribed areas of gardens, short grassland, long grassland and woodland, and along woodland edge, hedgerows and fence lines.
Abstract: Summary 1. Bumblebees provide an important pollination service to both crops and wild plants. Many species have declined in the UK, particularly in arable regions. While bumblebee forage requirements have been widely studied, there has been less consideration of whether availability of nesting sites is limiting. It is important to know which habitats contain the most bumblebee nests per unit area in order to guide conservation and management options; particularly in the light of current emphasis on environmental stewardship schemes for farmed landscapes. However, it is extremely difficult to map the distribution of bumblebee nests. 2. We describe the findings of the National Bumblebee Nest Survey, a structured survey carried out by 719 volunteers in the UK during early summer 2004. The surveyors used a defined protocol to record the presence or absence of bumblebee nests in prescribed areas of gardens, short grassland, long grassland and woodland, and along woodland edge, hedgerows and fence lines. The records allowed us to estimate the density of bumblebee nests in each of these habitats for the first time. 3. Nest densities were high in gardens (36 nests ha ‐1 ), and linear countryside habitats (fence lines, hedgerows, woodland edge: 20‐37 nests ha ‐1 ), and lower in non-linear countryside habitats (woodland and grassland: 11‐15 nests ha ‐1 ). 4. Findings on nest location characteristics corroborate those of an earlier survey carried out in the UK (Fussell & Corbet 1992). 5. Synthesis and applications . Gardens provide an important nesting habitat for bumblebees in the UK. In the countryside, the area occupied by linear features is small compared with that of non-linear features. However, as linear features contain high densities of nests, management options affecting such features may have a disproportionately large effect on bumblebee nesting opportunities. Current farm stewardship schemes in the UK are therefore likely to facilitate bumblebee nesting, because they provide clear guidance and support for ‘sympathetic’ hedgerow and field margin management.

Journal ArticleDOI
TL;DR: In the first study of the effects of tropical forest fragmentation on entire understorey bee assemblages, bee community resilience to land-use change is found, as deforested sites and small forest fragments can have a diverse component of bees.
Abstract: Summary 1. Despite ongoing concerns and controversy over a putative ‘global pollination crisis’ there is little information on the response of bees, the most important group of pollinators, to land-use change. In particular, there are no published studies of the effects of tropical forest fragmentation on entire bee communities. 2. We examined bee community responses to forest fragment size, shape, isolation and landscape context (forest variables) by sampling foraging bees at ground level using aerial netting within, and in pastures adjacent to, 22 forest fragments ranging in area from c. 0·25 ha to 230 ha, in southern Costa Rica. We sampled each site 13 times in total, in both wet and dry seasons. 3. Although there were no effects of forest variables on bee diversity and abundance, we did find strong changes in bee community composition. In particular, tree-nesting meliponines (social stingless bees) were associated with larger fragments, smaller edge:area ratios and greater proportions of forest surrounding sample points, while introduced Apis showed opposite patterns. 4. Community composition was also strikingly different between forests and pastures, despite their spatial proximity. In forests, even in the smallest patches, meliponines comprised a much larger proportion of the apifauna, and orchid bees (euglossines) were common. In pastures, Apis was much more abundant and no euglossine bees were found. 5. These results agree broadly with other studies that have found contrasting responses to habitat fragmentation from different bee groups. Conserving meliponine bees, important for pollination of coffee and other crops, and euglossine bees, critical in long-distance pollen transport, will require forest. 6. Synthesis and applications . In the first study of the effects of tropical forest fragmentation on entire understorey bee assemblages, we found bee community resilience to land-use change, as deforested sites and small forest fragments can have a diverse component of bees. While bees as a whole show some degree of resilience to land-use change, there are taxon-specific responses and, in our study area, there is clear value to conserving native forest, particularly for the ecologically and economically important meliponine and euglossine bees.

Journal ArticleDOI
TL;DR: A set of indicators of ecological change for monitoring the interaction between a population and its habitat as a basis for adaptive management to attain explicit goals and to improve knowledge of the system is presented.
Abstract: 1. High-density populations of large herbivores are now widespread. Wildlife managers commonly attempt to control large herbivores through hunting to meet specific management objectives, considering population density as the minimal key source of information. Here, we review the problems of censusing populations of large herbivores and describe an alternative approach, employing indicators of ecological change. 2. Estimating density of large herbivores with high precision and accuracy is difficult, especially over large areas, and requires considerable investment of time, people and money. Management decisions are often made on an annual basis, informed by population changes over the previous year. However, estimating year-to-year changes in density is not a realistic goal for most large herbivores. Furthermore, population density per se provides no information on the relationship between the population and its habitat. 3. For successful management of large herbivores, we need to consider not only the fate of the population, but rather changes in both population and habitat features, as well as their interaction. Managers require information on trends in both the animal population and habitat quality in order to interpret changes in the interaction between these two compartments. 4. We propose that a set of indicators of animal performance, population abundance, habitat quality and/or herbivore habitat impact provides relevant information on the population– habitat system. Monitoring temporal changes in these indicators provides a new basis for setting hunting quotas to achieve specific management objectives. This sort of adaptive management is employed widely in France for managing roe deer Capreolus capreolus . 5. Synthesis and applications . The management of large herbivores would be improved by investing fewer resources in trying to estimate the absolute abundance of ungulates, and more resources in collecting additional data to inform understanding of the ecological status of the ungulate–habitat system being managed. This paper presents a set of indicators of ecological change for monitoring the interaction between a population and its habitat as a basis for adaptive management to attain explicit goals and to improve knowledge of the system. This approach could improve management for a variety of large herbivores, by harmonizing actions at wide spatial scales.

Journal ArticleDOI
TL;DR: This work examined whether habitat preferences of a declining shrub steppe songbird, the Brewer's sparrow Spizella breweri, were adaptive when multiple reproductive fitness components and spatial scales (landscape, territory and nest patch) were considered.
Abstract: Summary 1 Identifying the habitat features that influence habitat selection and enhance fitness is critical for effective management. Ecological theory predicts that habitat choices should be adaptive, such that fitness is enhanced in preferred habitats. However, studies often report mismatches between habitat preferences and fitness consequences across a wide variety of taxa based on a single spatial scale and/or a single fitness component. 2 We examined whether habitat preferences of a declining shrub steppe songbird, the Brewer's sparrow Spizella breweri, were adaptive when multiple reproductive fitness components and spatial scales (landscape, territory and nest patch) were considered. 3 We found that birds settled earlier and in higher densities, together suggesting preference, in landscapes with greater shrub cover and height. Yet nest success was not higher in these landscapes; nest success was primarily determined by nest predation rates. Thus landscape preferences did not match nest predation risk. Instead, nestling mass and the number of nesting attempts per pair increased in preferred landscapes, raising the possibility that landscapes were chosen on the basis of food availability rather than safe nest sites. 4 At smaller spatial scales (territory and nest patch), birds preferred different habitat features (i.e. density of potential nest shrubs) that reduced nest predation risk and allowed greater season-long reproductive success. 5 Synthesis and applications. Habitat preferences reflect the integration of multiple environmental factors across multiple spatial scales, and individuals may have more than one option for optimizing fitness via habitat selection strategies. Assessments of habitat quality for management prescriptions should ideally include analysis of diverse fitness consequences across multiple ecologically relevant spatial scales.

Journal ArticleDOI
TL;DR: In this article, the authors investigated how dry-season surface-water availability constrained the distribution of an entire elephant population, using aerial and waterhole census data from Hwange National Park, Zimbabwe.
Abstract: 1. Concerns over the ecological impacts of high African elephant Loxodonta africana densities suggest that it may be necessary to control their numbers locally, although the best management approach is still widely debated. Artificial water supply is believed to be a major cause of local overabundance, and could be used as a potential tool to regulate elephant distribution and impact across landscapes, but its effect on elephants at the population scale has never been studied. 2. We assessed how dry-season surface-water availability constrained the distribution of an entire elephant population, using aerial and waterhole census data from Hwange National Park, Zimbabwe. The study was initiated in 1986, when the population was released from culling. We studied how artificial waterholes, holding water throughout the dry season, and vegetation production, estimated from a normalized difference vegetation index (NDVI), influenced the long-term distribution of elephant densities. We also investigated how the elephant distribution responded to changes in population density and annual rainfall, a driver of surface-water availability. 3. Long-term dry-season elephant densities across the park tended to increase with vegetation production, and increased asymptotically with the density of artificial waterholes. 4. Since the culling stopped, dry-season elephant densities have increased in most areas of the park, except in areas of low vegetation production and low water availability. Interannual fluctuations in elephant distribution are linked to rainfall variability through its effect on surface-water availability. During dry years elephants concentrated in areas where artificial pumping maintained surface-water availability during the dry season. 5. During dry years elephant numbers at waterholes increased because of reduced surface-water availability, and elephants were distributed more evenly across waterholes, although active waterholes were unevenly distributed across the park. 6. Synthesis and applications . Surface-water availability drives the distribution and abundance of elephants within Hwange National Park, and therefore appears to be at the heart of the trade-off between elephant conservation and the extent of their impact on ecosystems. Artificial manipulation of surface water is one of the tools available for the management of elephant populations and should not be overlooked when considering options for controlling elephant numbers in places where they are considered to be overabundant.

Journal ArticleDOI
TL;DR: In this paper, the authors provided the first direct test of the productivity-diversity relationship for the world's largest contiguous terrestrial biome, the Eurasian Steppe, and found that a positive linear, rather than hump-shaped, form was ubiquitous across all organizational levels and spatial scales examined.
Abstract: Summary 1 Understanding the productivity–diversity relationship (PDR) is a key issue in biodiversity–ecosystem functioning research, and has important implications for ecosystem management. Most studies have supported the predominance of a hump-shaped form of PDR in which species richness peaks at an intermediate level of productivity. However, this view has been challenged recently on several grounds. 2 Based on data from 854 field sites across the Inner Mongolia region of the Eurasian Steppe, we tested the form of PDR at different organizational levels (association type, vegetation type and biome) and multiple spatial scales (local, landscape and regional). 3 Our results showed that a positive linear, rather than hump-shaped, form was ubiquitous across all organizational levels and spatial scales examined. On the regional scale, this monotonic PDR pattern corresponded closely with the gradient in mean annual precipitation (MAP) and soil nitrogen. Increasing species dissimilarity with productivity could also contribute to the positive linear form of PDR. 4 Our results also indicated that grazing decreased both primary productivity and species richness but, intriguingly, not the form of PDR. 5 Synthesis and applications. This study provides the first direct test of the productivity–diversity relationship for the world's largest contiguous terrestrial biome – the Eurasian Steppe. The predominance of a positive linear relationship in this region defies the commonly held view that a unimodal form of PDR dominates terrestrial ecosystems, supported mainly by studies in Africa, Europe and North America. It suggests that precipitation has a greater control on the productivity–diversity relationship in the Eurasian Steppe than grasslands elsewhere. Also, the positive linear relationship is surprisingly robust to grazing. Our results provide new insight into the productivity–diversity relationship and have several implications for restoring degraded lands and understanding ecological consequences of climate change in the Eurasian Steppe.

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TL;DR: A computer-aided photo-identification technique that relies on natural marks to identify individuals of Carcharias taurus, a shark species that is critically endangered off the eastern Australian coast and considered globally vulnerable is presented.
Abstract: Summary 1 The ability to identify individual animals is a critical aid in wildlife and conservation studies requiring information on behaviour, distribution, habitat use, population and life-history parameters. We present a computer-aided photo-identification technique that relies on natural marks to identify individuals of Carcharias taurus, a shark species that is critically endangered off the eastern Australian coast and considered globally vulnerable. The technique could potentially be applied to a range of species of similar form and bearing natural marks. 2 The use of natural marks for photo-identification is a non-invasive technique for identifying individual animals. As photo-identification databases grow larger, and their implementation spans several years, the historically used visual-matching processes lose accuracy and speed. A computerized pattern-matching system that requires initial user interaction to select the key features aids researchers by considerably reducing the time needed for identification of individuals. 3 Our method uses a two-dimensional affine transformation to compare two individuals in a commonly defined reference space. The methodology was developed using a database of 221 individually identifiable sharks that were photographically marked and rephotographed over 9 years, demonstrating both the efficacy of the technique and that the natural pigment marks of C. taurus are a reliable means of tracking individuals over several years. 4 Synthesis and applications. The identification of individual animals that are naturally marked with spots or similar patterns is achieved with an interactive pattern-matching system that uses an affine transformation to compare selected points in a single-user computer-aided interface. Our technique has been used successfully on C. taurus and we believe the methodology can be applied to other species of a similar form that have natural marks or patterns. The identification of individuals allows accurate tracking of their movements and distribution, and contributes to better population estimates for improved wildlife management and conservation planning.

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TL;DR: In this article, the authors conducted short and long-distance translocations and trapping studies of white-footed mice ( Peromyscus leucopus ) and eastern chipmunks ( Tamias striatus ) near two-lane paved roads, which differed widely in traffic amount, from 47 to 15 433 vehicles per day.
Abstract: Summary 1. Roads can act as barriers to animal movement, which may reduce population persistence by reducing recolonization of empty habitats and limiting immigration. Appropriate mitigation of this barrier effect (e.g. seasonal road closures, location and design of wildlife over- or underpasses) depends upon whether the animals avoid the road itself or the traffic on the road. Empirical studies of road avoidance to date do not generally differentiate between these. 2. We conducted short- and long-distance translocations and trapping studies of white-footed mice ( Peromyscus leucopus ) and eastern chipmunks ( Tamias striatus ) near two-lane paved roads, which differed widely in traffic amount, from 47 to 15 433 vehicles per day. 3. In the trapping study (13 sites) only five animals moved across a road, in comparison to 36 animals that moved the same distance without an intervening road ( P < 0·0001). In the short-distance translocations (15 sites), 51% of the small mammals that were translocated across roads returned, in comparison to a return rate of 77% of animals that were translocated a similar distance with no intervening road ( P = 0·009). 4. In the long-distance translocation study (24 sites) we found that each intervening road reduced the probability of successful return by about 50%. 5. We found no significant effects of traffic amount on return rates in either the short-distance or the long-distance translocations studies. 6. Small mammal densities were not lower near roads and we found no evidence for a decrease in density near roads with increasing traffic amount. 7. Synthesis and applications. Our results suggest that small mammals avoid the road itself, and not emissions such as noise from the traffic on the roads. Our results imply that the barrier effect of roads on these species cannot be mitigated by measures aimed at reducing traffic amount; other measures such as wildlife passages would be needed.

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TL;DR: In this article, the effects of ski tourism on capercaillie habitat use and adrenocortical activity, measured non-invasively in droppings, were investigated.
Abstract: 1. Human outdoor recreational activities are increasing and have a significant impact on wildlife. There are few methods suitable for investigating the response of rare and endangered species to human recreational activities, although the impact can be assessed at various scales by measuring both physiological and behavioural responses to disturbance. 2. Capercaillie Tetrao urogallus are suffering strong population declines throughout central Europe. We examined the effects of ski tourism on capercaillie habitat use and adrenocortical activity, measured non-invasively in droppings. 3. During three winters, 2003–06, we radio-tracked 13 capercaillie. In the southern Black Forest in Germany, we sampled 396 droppings of these and additional individuals before and after the start of the ski season. We tested whether the intensity of human winter recreational activities affected home range location and habitat use, and we identified those factors influencing the concentration of corticosterone metabolites (CM) in droppings. 4. Capercaillie used habitats subject to ski tourism. Although the latter did not affect home range location, capercaillie preferred undisturbed forests within their home ranges and avoided areas with high recreation intensity in the ski season. Faecal CM levels of individuals in areas with low recreation intensity were significantly lower than those in areas with moderate or high recreation intensity during the entire study period. 5. We conclude that ski tourism affects both habitat use and endocrine status in capercaillie, with potential negative consequences on body condition and overall fitness. 6. Synthesis and applications. This study demonstrates the relevance of studying wildlife responses at various temporal and spatial scales, and the value of using multiple methods applied to the same individuals to monitor the impact of human recreational activities on a free-ranging species. In order to protect capercaillie populations, we recommend that managers keep forests inhabited by capercaillie free from tourism infrastructure and retain undisturbed forest patches within skiing areas.

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TL;DR: It is concluded that establishing ECA is an effective method of enhancing both pollinator species richness and abundance and pollination services to nearby intensely managed farmland.
Abstract: Summary 1. Agri-environment schemes attempt to counteract the loss of biodiversity and associated ecosystem services such as pollination and natural pest control in agroecosystems. However, only a few studies have evaluated whether these attempts are successful. 2. We studied the effects of managing meadows according to the prescriptions of ecological compensation areas (ECA), the most widely adopted agri-environment scheme in Switzerland, on both pollinator species richness and abundance, and the reproductive success of plants in nearby intensively managed meadows (IM). 3. We established arrays of four pots, each containing individuals of three insectpollinated, non-autogamous ‘phytometer’ species ( Raphanus sativus , Hypochaeris radicata and Campanula glomerata ), in ECA and adjacent IM at increasing distances from the ECA at 13 sites. 4. Species richness and abundance of hoverflies, solitary bees and large-sized pollinators (mainly social bees and butterflies) were significantly higher in ECA than in adjacent IM. Species richness and abundance of small-sized pollinators in IM declined significantly with increasing distance from ECA, whereas large-sized pollinators were not significantly affected by distance. Plant species richness and flower abundance were the major drivers of pollinator species richness and abundance; the area of an ECA had no significant influence. 5. Individual plants of R. sativus and C. glomerata produced more and heavier seeds in ECA than in IM. Furthermore, the number of seeds of these two phytometer species was positively correlated with species richness and abundance of bees. No such effects were observed for individual plants of H. radicata . The number of fruits and seeds per plant of R. sativus in IM decreased with increasing distance from ECA. 6. Synthesis and applications. We conclude that establishing ECA is an effective method of enhancing both pollinator species richness and abundance and pollination services to nearby intensely managed farmland. Our study emphasizes the importance of connectivity between ECA in maintaining diverse pollinator communities and thereby providing pollination services in agricultural landscapes.

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TL;DR: The results suggest that planning for conservation of biodiversity at landscape scales may be better than implementing grazing guidelines for individual grasslands, and that grazing intensity should vary within or between landscapes to preserve pollinator diversity.
Abstract: Summary 1 The loss of semi-natural grasslands in agro-ecosystems has increased the importance of adequate management of remaining grasslands Recommendations for intensive grazing have been debated because the effects of different management practices may differ between taxa and species The increased fragmentation of grasslands suggests that the influence of management practices should be studied in a landscape context 2 We studied four groups of flower visitors, many of which are pollinators, bees (Apoidea), but terflies (Lepidoptera), hoverflies (Syrphidae) and beetles (Cole?ptera), in semi-natural grasslands managed at three intensity levels in eight areas in central Sweden Local characteristics of the grasslands were recorded and landscape diversity was quantified Vegetation height was correlated with grazing intensity: intensive grazing with the shortest vegetation and abandoned grassland with the tallest 3 The insect groups responded differently to grazing intensity Species richness and abundance differed between management regimes for beetles and hoverflies but not for bees and butterflies 4 The effects of local habitat and landscape composition on species richness, abundance and composition differed between groups Bee diversity responded to both local and landscape factors Butterflies were mainly affected by local vegetation height and linear elements in the landscape More species of hoverflies were recorded in tall vegetation and in landscapes with high forest cover Beetles responded only to local environment characteristics 5 Synthesis and applications We demonstrate the importance of studying different insect groups simultaneously when evaluating habitat and landscape qualities for diversity The results suggest that planning for conservation of biodiversity at landscape scales may be better than implementing grazing guidelines for individual grasslands Grazing intensity should vary within or between landscapes to preserve pollinator diversity Conservation management to encourage flower visitors cannot be generalized to include all groups simultaneously

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TL;DR: If carefully prepared, remotely sensed variables are useful additional predictors for the spatial distribution of trees, and a significant correlation between climate and remote sensing variables is indicated.
Abstract: Summary 1. Compared to bioclimatic variables, remote sensing predictors are rarely used for predictive species modelling. When used, the predictors represent typically habitat classifications or filters rather than gradual spectral, surface or biophysical properties. Consequently, the full potential of remotely sensed predictors for modelling the spatial distribution of species remains unexplored. Here we analysed the partial contributions of remotely sensed and climatic predictor sets to explain and predict the distribution of 19 tree species in Utah. We also tested how these partial contributions were related to characteristics such as successional types or species traits. 2. We developed two spatial predictor sets of remotely sensed and topo-climatic variables to explain the distribution of tree species. We used variation partitioning techniques applied to generalized linear models to explore the combined and partial predictive powers of the two predictor sets. Non-parametric tests were used to explore the relationships between the partial model contributions of both predictor sets and species characteristics. 3. More than 60% of the variation explained by the models represented contributions by one of the two partial predictor sets alone, with topo-climatic variables outperforming the remotely sensed predictors. However, the partial models derived from only remotely sensed predictors still provided high model accuracies, indicating a significant correlation between climate and remote sensing variables. The overall accuracy of the models was high, but small sample sizes had a strong effect on cross-validated accuracies for rare species. 4. Models of early successional and broadleaf species benefited significantly more from adding remotely sensed predictors than did late seral and needleleaf species. The coresatellite species types differed significantly with respect to overall model accuracies. Models of satellite and urban species, both with low prevalence, benefited more from use of remotely sensed predictors than did the more frequent core species. 5. Synthesis and applications. If carefully prepared, remotely sensed variables are useful additional predictors for the spatial distribution of trees. Major improvements resulted for deciduous, early successional, satellite and rare species. The ability to improve model accuracy for species having markedly different life history strategies is a crucial step for assessing effects of global change.

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TL;DR: In this paper, the authors evaluated up to what distance high-quality habitats (nature reserves and artificially created flower-rich patches) affect the diversity of forbs and pollinators in intensively farmed landscapes of the Netherlands.
Abstract: 1. Over the last decades, biodiversity in agricultural landscapes has declined drastically. Initiatives to enhance biodiversity, such as agri-environment schemes, often have little effect, especially in intensively farmed landscapes. The effectiveness of conservation management may be improved by scheme implementation near high-quality habitats that can act as a source of species. We evaluated up to what distance high-quality habitats (nature reserves and artificially created flower-rich patches) affect the diversity of forbs and pollinators in intensively farmed landscapes of the Netherlands.

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TL;DR: Nonlinear relationships between fir regeneration and deer densities imply that the level of culling required to reach herbivore densities compatible with natural regeneration of native forest is larger than expected if tree regeneration was proportional to deer density.
Abstract: Summary 1. The density of large herbivores is a major driver of forest ecosystem structure and function in conjunction with episodic disturbances, especially in forests with a regeneration strategy based on shade-tolerant seedlings capable of re-establishing canopy dominance (advance regeneration). Yet, uncertainty about the relationships between forest regeneration, herbivore density and other disturbances makes it difficult to set population goals. Using an innovative controlled browsing experiment, we investigated the relationships between the regeneration dynamics of balsam fir Abies balsamea , the density of white-tailed deer Odocoileus virginianus and timber harvesting. 2. We hypothesize that advance tree regeneration either: (i) recovers approximately linearly as deer density is reduced; (ii) recovers exponentially; or (iii) does not recover because factors other than browsing control advance regeneration. We tested these alternatives through manipulation of deer densities (0, 7·5, 15 deer km − 2 and in situ local densities) and forest cover (clearcut and uncut forest). 3. Balsam fir seedling mortality decreased exponentially with decreasing deer density in clearcut and approximately linearly in uncut forest. Independently of deer density, the recruitment of seedlings in clearcut dropped from 56 ± 5% to 7 ± 1% within 3 years. 4. Seedling growth increased exponentially with decreasing deer density in clearcut whereas no height growth was observed in uncut forest. 5. Overall, the abundance of fir saplings recovered exponentially in clearcut but remained low and independent of deer density in uncut forest. The abundance of spruce Picea spp. saplings was unrelated to deer density and increased with time. 6. Synthesis and applications . Forest disturbance from selective browsing at high deer densities over an extended period of time leads to recruitment failure following a canopy disturbance such as a clearcut. Indirect competitive advantage given to species resistant to browsing can shift forest composition. Nonlinear relationships between fir regeneration and deer densities imply that the level of culling required to reach herbivore densities compatible with natural regeneration of native forest is larger than expected if tree regeneration was proportional to deer density. In the boreal forest of Anticosti Island, local densities < 15 deer km − 2 achieved within 3 years following clearcut are compatible

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TL;DR: In this article, the authors used one agri-environmental scheme, organic farming, as a landscape-scale experiment to test whether its effect on butterflies depends on the spatial scale at which it is applied.
Abstract: 1. Agri-environmental schemes (AES) are commonly adopted in Europe to reduce the loss of farmland biodiversity. These schemes have, however, been criticized as not fulfilling this goal, partly because their effectiveness is thought to differ depending on external factors such as landscape heterogeneity, the focal organism and scale of application. 2. We used one AES, organic farming, as a landscape-scale experiment to test whether its effect on butterflies depends on the spatial scale at which it is applied. Our study system consisted of organically and conventionally managed fields within eight pairs of matched landscapes, differing in the proportion of land under organic management at the landscape scale. Butterflies and their nectar and host-plant resources were surveyed along the fields and adjacent field borders. 3. Butterfly species richness and abundance were significantly increased by organic farming at the local scale. However, local butterfly species richness was also positively affected by a large proportion of organic farming in the surrounding landscape, independent of the local farming practice. Local and landscape farming practices interacted such that the farming practice within fields had a larger effect on butterfly abundance if surrounded by conventionally rather than organically managed fields. These results could only partly be explained by variation in local availability of nectar and host-plant resources. 4. The total observed species richness (γ-diversity) was higher in organically managed landscapes, mainly because of higher within-field diversity (α-diversity), whereas the between-field diversity (β-diversity) tended to be similar in both landscape types. 5. Synthesis and applications. Butterflies were positively affected by organic farming at a local scale, but the amount of organic farming in the surrounding landscape had either an additive (species richness) or interactive (abundance) effect. Therefore, the spatial distribution of AES must be taken into account to maximize their potential to increase farmland biodiversity. We have shown that organic farming affected butterfly species richness on nearby conventionally managed land. This suggests a landscape effect of organic farming that may indicate a wider benefit of AES for biodiversity conservation. (Less)

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TL;DR: In this paper, the authors focus on the effects of anthropogenic stressors on freshwater ecosystems and on how to maintain and restore ecological quality, as defined by the European Water Framework Directive (WFD) or other standards.
Abstract: Summary 1 Freshwater ecosystems have long been affected by numerous types of human interventions that have a negative impact on their water quality and ecological state. Fortunately, in most western countries the input of sewage to freshwater systems has been reduced, but hydromorphological alterations, eutrophication-related turbidity and loss of biodiversity remain major problems in many parts of the world. Such impacts prevent the achievement of a high or good ecological state, as defined by the European Water Framework Directive (WFD) or other standards. 2 This paper synthesizes and links the findings presented in the seven papers of this special profile, focusing on the effects of anthropogenic stressors on freshwater ecosystems and on how to maintain and restore ecological quality. The papers cover a broad range of research areas and methods, but are all centred on the relationship between dispersal barriers, the connectivity of waterways and the restoration of rivers and lakes. 3 The construction of dams and reservoirs disturbs the natural functioning of many streams and rivers and shore-line development around lakes may reduce habitat complexity. New methods demonstrate how reservoirs may have a severe impact on the distribution and connectivity of fish populations, and new techniques illustrate the potential of using graph theory and connectivity models to illustrate the ecological implications. Hydromorphologically degraded rivers and streams can be restored by addition of wood debris, but ‘passive’ restoration via natural wood recruitment may be preferable. The most cost-effective way to restore streams may also include information campaigns to farmers on best management practices. Removal of zooplanktivorous fish often has marked positive effects on trophic structure in lakes, but there is a tendency to return to turbid conditions after 8–10 years or less unless fish removal is repeated. 4 Synthesis and applications. Development of new methods, as well as derivation of more general conclusions from reviewing the effects of previous restoration efforts, are crucial to achieve progress in applied freshwater research. The papers contained in this Special Profile contribute on both counts, as well as illustrating the importance of well-designed research projects and monitoring programmes to record the effects of the interventions. Such efforts are vital if we are to improve our knowledge of freshwater systems and to elaborate the best and most cost-effective recommendations. They may also help in achieving a good ecological state or potential in water bodies by 2015, as demanded by the European WFD.

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TL;DR: In this article, the authors used a robust sampling design, accounting for both seasonality and vertical stratification, to examine fruit-feeding butterflies (Nymphalidae) in patches of secondary forest and Eucalyptus plantation 2-3 orders of magnitude larger than those previously sampled.
Abstract: 1. Secondary forests growing on cleared lands and tree plantations are becoming increasingly widespread land-uses in the tropics. Previous studies are divided on the conservation importance of these habitats for tropical forest butterflies. 2. We use a robust sampling design, accounting for both seasonality and vertical stratification, to examine fruit-feeding butterflies (Nymphalidae) in patches of secondary forest and Eucalyptus plantation 2-3 orders of magnitude larger than those previously sampled. 3. We recorded 10 587 butterflies and 128 species in 3200 trap-days. Species richness was highest in primary forest and lowest in plantations, while butterfly abundance showed the opposite response. All habitats were distinct in terms of community structure. 4. There was a significant interaction between habitat and season based on richness and abundance metrics, although not based on community structure. Secondary forest exhibited higher observed richness than primary forest in the peak of the dry-season, but not at other times of the year. This observation could explain the lack of consensus in previous studies, as those reporting higher richness in secondary forest only sampled during the dry-season. 5. In general, habitat quality appeared to be more important than the surrounding landscape in determining butterfly community structure. However, the community structure of the strong-flying Charaxinae was related to the amount of primary forest in surrounding landscape. There was very poor congruence between the response patterns of richness and abundance among different butterfly subfamilies. 6. Linear regressions between resource availability and butterfly abundance showed a strong influence of leaf phenology in both primary and secondary forest, but no influence of fruit phenology. 7. Synthesis and applications: A lack of seasonal replication and small sampling sizes may have led previous studies to over-emphasize the conservation importance of secondary forest and plantations for butterflies. We show that these habitats are significantly poorer than primary forest in terms of number of species, and hold distinct butterfly communities. Although quantifying the number of species restricted to primary forest remains difficult, these results cast doubt on the presumption that secondary habitats will provide refuge for many of the species being lost through deforestation. We therefore strongly urge measures that prioritize the conservation of remaining primary forests where they still exist.

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TL;DR: In this article, the effect of grassland management and landscape composition, and their potential interactions, on diversity patterns of vascular plants and Orthoptera in Alpine hay meadows, were investigated in three groups of management regimes defined by different amounts of fertilizer nitrogen applied and cutting frequency: extensive, low intensive and intensive meadows situated in different landscape contexts.
Abstract: Summary 1. Several recent studies have considered the relative effects of local vs. landscape factors on diversity of several animal taxa in grasslands. However, very few have considered vascular plant or Orthoptera species, both of which are important biotic components of grassland ecosystems. The general aim of this study was to determine the effect of grassland management and landscape composition, and their potential interactions, on diversity patterns of vascular plants and Orthoptera in Alpine hay meadows. 2. We considered three groups of management regimes defined by different amounts of fertilizer nitrogen applied and cutting frequency: (i) extensive, (ii) low intensive and (iii) intensive meadows situated in different landscape contexts. To evaluate the relative importance of meadow management and landscape composition on diversity patterns, we applied analysis of covariance and variation partitioning analyses. 3. Diversity patterns of both taxonomic groups were affected primarily by grassland management. The extensive management regime was most suitable for conserving high species richness of both taxonomic groups. The intensive meadows were characterized by plant communities dominated by a few ruderal and competitor species, and by Orthoptera communities composed of only a few abundant Caelifera species (e.g. Chorthippus parallelus ), while Ensifera species had very low individual densities. 4. Regarding the landscape determinants, plant diversity patterns were not significantly related to any landscape composition variables. In contrast, a high proportion of urban elements and grassland in the surrounding landscape (radius 500 m) affected Orthoptera species richness negatively. 5. Synthesis and applications . The implementation of well-targeted agri-environment schemes for compensation payments against intensification and abandonment of extensive hay meadows seems to be a promising tool to protect both taxonomic groups. In this context, we suggest that the existing Swiss ecological compensation area (ECA) hay meadow agri-environment scheme, which requires at least one cut every year and no fertilizer application, might also be suitable for the Italian Alps. Moreover, the significant influence of landscape composition on Orthoptera diversity suggests that the effectiveness of measures applied at a field scale may be improved by integration of protected area schemes, promoting extensive management at a farm scale.

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TL;DR: In this paper, the consequences of increased grazing were investigated using a spatial simulation of coral reef dynamics in shallow (depth 3 6 m) and mid-shelf forereefs (depth 7 15 m).
Abstract: Summary 1. Ontogenetic dispersal of animals has been observed among many ecosystems, but its full ecological significance is poorly understood. By modelling the consequences of ontogenetic reef fish dispersal between Caribbean mangroves and adjacent coral reefs, we quantify the broader implications of ecosystem connectivity for ecosystem function and resilience to climate-driven disturbance. 2. Mangrove-driven enrichment of parrotfish grazing on two coral reef habitats was calculated using empirical data. The consequences of increased grazing were then investigated using a spatial simulation of coral reef dynamics in shallow (depth 3‐6 m) and mid-shelf forereefs (depth 7‐15 m). 3. The largest increase in grazing occurred in shallow reefs, but was found to have negligible consequences for coral population dynamics. 4. In contrast, relatively weak increases in grazing on deeper reefs had profound consequences: reefs near mangroves were able to experience coral recovery under the most intense hurricane regimes of the Caribbean, whereas those lacking ecosystem connectivity had little capacity for recovery. 5. This surprising result occurs because reefs exhibit multiple stable equilibria and mangrove enrichment of grazing in mid-shelf reefs coincides with a zone of system instability. A small increase in grazing shifted the reef beyond a bifurcation point, thereby enhancing resilience massively. A relatively large increase in grazing in shallow reefs had minimal ecosystem consequence because the grazing levels concerned were more than double the levels needed to exceed the corresponding bifurcation point for this habitat. 6. Synthesis and applications . Caribbean mangroves are being deforested at a faster rate than rainforests, yet their protective role against hurricane damage extends not only shoreward to coastal environments but also seaward to increasing the resilience of offshore coral reefs. Specifically, ontogenetic mechanisms of ecosystem connectivity involving parrotfish may increase the probability that coral populations will recover from climate-induced changes in hurricane disturbance. Efforts to arrest mangrove deforestation and restore mangrove habitats are likely to increase the likelihood of recovery of corals on mid-depth (7‐15 m) reefs after disturbance. In general, the ecosystem-level consequences of ontogenetic migration do not correspond necessarily to the magnitude of locally observed effects (i.e. the pattern of grazer enrichment exhibited the opposite pattern to that of its consequences for system resilience). Therefore, caution must be exercised when interpreting the functional significance of changes in species abundance for ecosystem process (e.g. grazing pressure and its implications for coral growth and survival). Impacts of shifting abundance or process are perhaps best appreciated using mechanistic ecosystem models.