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Showing papers in "Journal of Physical Chemistry A in 2012"


Journal ArticleDOI
TL;DR: A Master Equation Solver for Multi-Energy Well Reactions (MESMER), a user-friendly, object-oriented, open-source code designed to facilitate kinetic simulations over multi-well molecular energy topologies where energy transfer with an external bath impacts phenomenological kinetics.
Abstract: The most commonly used theoretical models for describing chemical kinetics are accurate in two limits. When relaxation is fast with respect to reaction time scales, thermal transition state theory (TST) is the theoretical tool of choice. In the limit of slow relaxation, an energy resolved description like RRKM theory is more appropriate. For intermediate relaxation regimes, where much of the chemistry in nature occurs, theoretical approaches are somewhat less well established. However, in recent years master equation approaches have been successfully used to analyze and predict nonequilibrium chemical kinetics across a range of intermediate relaxation regimes spanning atmospheric, combustion, and (very recently) solution phase organic chemistry. In this article, we describe a Master Equation Solver for Multi-Energy Well Reactions (MESMER), a user-friendly, object-oriented, open-source code designed to facilitate kinetic simulations over multi-well molecular energy topologies where energy transfer with an external bath impacts phenomenological kinetics. MESMER offers users a range of user options specified via keywords and also includes some unique statistical mechanics approaches like contracted basis set methods and nonadiabatic RRKM theory for modeling spin-hopping. It is our hope that the design principles implemented in MESMER will facilitate its development and usage by workers across a range of fields concerned with chemical kinetics. As accurate thermodynamics data become more widely available, electronic structure theory is increasingly reliable, and as our fundamental understanding of energy transfer improves, we envision that tools like MESMER will eventually enable routine and reliable prediction of nonequilibrium kinetics in arbitrary systems.

457 citations


Journal ArticleDOI
TL;DR: Methods to measure the phase, or phases, and disorder at a Ni(OH)(2) sample surface and to correlate desired chemical properties to their structural origins are established and unifies the large body of literature on the topic.
Abstract: The present work utilizes Raman and infrared (IR) spectroscopy, supported by X-ray diffraction (XRD) and X-ray photoelectron spectroscopy (XPS) to re-examine the fine structural details of Ni(OH)(2), which is a key material in many energy-related applications. This work also unifies the large body of literature on the topic. Samples were prepared by the galvanostatic basification of nickel salts and by aging the deposits in hot KOH solutions. A simplified model is presented consisting of two fundamental phases (α and β) of Ni(OH)(2) and a range of possible structural disorder arising from factors such as impurities, hydration, and crystal defects. For the first time, all of the lattice modes of β-Ni(OH)(2) have been identified and assigned using factor group analysis. Ni(OH)(2) films can be rapidly identified in pure and mixed samples using Raman or IR spectroscopy by measuring their strong O-H stretching modes, which act as fingerprints. Thus, this work establishes methods to measure the phase, or phases, and disorder at a Ni(OH)(2) sample surface and to correlate desired chemical properties to their structural origins.

266 citations


Journal ArticleDOI
TL;DR: Molecular structures for 29 coumarin laser dyes are statistically analyzed and it is revealed that the closer the relevant substituents align with the direction of the intramolecular charge transfer (ICT), the larger the spectral shifts and the higher the molar extinction coefficients of coumarins.
Abstract: Coumarin derivatives are used in a wide range of applications, such as dye-sensitized solar cells (DSCs) and dye lasers, and have therefore attracted considerable research interest. In order to understand the molecular origins of their optoelectronic properties, molecular structures for 29 coumarin laser dyes are statistically analyzed. To this end, data for 25 compounds were taken from the Cambridge Structural Database and compared with data for four new crystal structures of coumarin laser dyes [Coumarin 487 (C(19)H(23)NO(2)), Coumarin 498 (C(16)H(17)NO(4)S), Coumarin 510 (C(20)H(18)N(2)O(2)), and Coumarin 525 (C(22)H(18)N(2)O(3))], which are reported herein. The competing contributions of different resonance states to the bond lengths of the 4- and 7-substituted coumarin laser dyes are computed based on the harmonic oscillator stabilization energy model. Consequently, a positive correlation between the contribution of the para-quinoidal resonance state and the UV-vis peak absorption wavelength of these coumarins is revealed. Furthermore, the perturbations of optoelectronic properties, owing to chemical substituents in these coumarin laser dyes, are analyzed: it is found that their UV-vis peak absorption and lasing wavelengths experience a red shift, as the electron-donating strength of the 7-position substituent increases and/or the electron-withdrawing strength of the 3- or 4-position substituent rises; this conclusion is corroborated by quantum-chemical calculations. It is also revealed that the closer the relevant substituents align with the direction of the intramolecular charge transfer (ICT), the larger the spectral shifts and the higher the molar extinction coefficients of coumarin laser dyes. These findings are important for understanding the ICT mechanism in coumarins. Meanwhile, all structure-property correlations revealed herein will enable knowledge-based molecular design of coumarins for dye lasers and DSC applications.

232 citations


Journal ArticleDOI
TL;DR: The results confirm that n-propyl is the smallestAlkyl radical to exhibit the low-temperature combustion properties of larger alkyl radicals, but n-butyl is perhaps a truer combustion archetype.
Abstract: The kinetics of the reaction of molecular oxygen with hydroperoxyalkyl radicals have been studied theoretically. These reactions, often referred to as second O2 addition, or O2 + QOOH reactions, are believed to be responsible for low-temperature chain branching in hydrocarbon oxidation. The O2 + propyl system was chosen as a model system. High-level ab initio calculations of the C3H7O2 and C3H7O4 potential energy surfaces are coupled with RRKM master equation methods to compute the temperature and pressure dependence of the rate coefficients. Variable reaction coordinate transition-state theory is used to characterize the barrierless transition states for the O2 + QOOH addition reactions as well as subsequent C3H6O3 dissociation reactions. A simple kinetic mechanism is developed to illustrate the conditions under which the second O2 addition increases the number of radicals. The sequential reactions O2 + QOOH → OOQOOH → OH + keto-hydroperoxide → OH + OH + oxy-radical and the corresponding formally direct ...

216 citations


Journal ArticleDOI
TL;DR: The chiroptical properties of a series of carbo[n]helicenes were investigated by the state-of-the-art approximate coupled cluster and density functional theory calculations, and the theoretical predictions enabled to rectify the erroneous experimental CD spectra of [5]- and [6] helicenes reported earlier, by using the enantiopure samples resolved by chiral HPLC.
Abstract: The chiroptical properties of a series of carbo[n]helicenes (n = 4–10) were investigated by the state-of-the-art approximate coupled cluster and density functional theory calculations. The theoretical calculation at the RI-CC2/TZVPP//DFT-D2-B97-D/TZVP level nicely reproduced the experimental CD spectra in both excitation energy and rotational strength without any shift or scaling. These calculations afforded the electric and the magnetic transition dipole moment vectors in [n]helicenes, allowing us to discuss the observed rotational strengths as a function of the number of benzene rings. Although the observed CD intensity was not immediately correlated to any of the calculated parameters, the anisotropy (g) factor of the 1Bb band and the specific rotation were found inversely proportional to n and nicely correlated with the helical pitch, but discontinuous at n = 6, where the aromatic rings start to overlap. In contrast, the g factor at the 1Ba band was rather insensitive to n. It was also revealed that t...

214 citations


Journal ArticleDOI
TL;DR: The study illustrates the synergy between overlap and stability and highlights the success of a combined, Coulomb-attenuated Tamm-Dancoff approach.
Abstract: Low orbital overlap and triplet instability problems in time-dependent density functional theory (TDDFT) are investigated for a new benchmark set, encompassing challenging singlet and triplet excitation energies of local, charge-transfer, and Rydberg character. The low orbital overlap problem is largely overcome for both singlet and triplet states by the use of a Coulomb-attenuated functional. For all the categories of functional considered, however, errors associated with triplet instability problems plague high overlap excitations, as exemplified by the excited states of acenes and polyacetylene oligomers. Application of the Tamm–Dancoff approximation reduces these errors for both singlet and triplet states, while leaving low-overlap excitations unaffected. The study illustrates the synergy between overlap and stability and highlights the success of a combined, Coulomb-attenuated Tamm–Dancoff approach.

202 citations


Journal ArticleDOI
TL;DR: A concerted reaction mechanism is discovered that is more favorable than previously proposed mechanisms and is in better alignment with experimental findings, which opens the door to accurate process modeling and educated catalyst design, which are vital steps toward producing more cost-efficient renewable energy.
Abstract: For over 90 years, researchers have postulated mechanisms for the cleavage of cellulose’s glycosidic bonds and resulting formation of levoglucosan without reaching consensus. These reactions are ke...

189 citations


Journal ArticleDOI
TL;DR: High-accuracy ab initio thermochemistry is presented for 219 small molecules relevant in combustion chemistry, including many radical, biradical, and triplet species, and the present values are the most accurate and comprehensive numbers available.
Abstract: High-accuracy ab initio thermochemistry is presented for 219 small molecules relevant in combustion chemistry, including many radical, biradical, and triplet species. These values are critical for accurate kinetic modeling. The RQCISD(T)/cc-PV∞QZ//B3LYP/6-311++G(d,p) method was used to compute the electronic energies. A bond additivity correction for this method has been developed to remove systematic errors in the enthalpy calculations, using the Active Thermochemical Tables as reference values. On the basis of comparison with the benchmark data, the 3σ uncertainty in the standard-state heat of formation is 0.9 kcal/mol, or within chemical accuracy. An uncertainty analysis is presented for the entropy and heat capacity. In many cases, the present values are the most accurate and comprehensive numbers available. The present work is compared to several published databases. In some cases, there are large discrepancies and errors in published databases; the present work helps to resolve these problems.

176 citations


Journal ArticleDOI
TL;DR: Simulations reveal that under most conditions relevant to combustion/ignition problems, the high-pressure rate rules can be used directly to describe the reactions of RO(2) and QOOH and indicate that equilibrium is established between the alkyl,RO(2), and γ- and δ-QOOH radicals.
Abstract: The unimolecular reactions of hydroperoxy alkyl radicals (QOOH) play a central role in the low-temperature oxidation of hydrocarbons as they compete with the addition of a second O2 molecule, which is known to provide chain-branching. In this work we present high-pressure rate estimation rules for the most important unimolecular reactions of the β-, γ-, and δ-QOOH radicals: isomerization to RO2, cyclic ether formation, and selected β-scission reactions. These rate rules are derived from high-pressure rate constants for a series of reactions of a given reaction class. The individual rate expressions are determined from CBS-QB3 electronic structure calculations combined with canonical transition state theory calculations. Next we use the rate rules, along with previously published rate estimation rules for the reactions of alkyl peroxy radicals (RO2), to investigate the potential impact of falloff effects in combustion/ignition kinetic modeling. Pressure effects are examined for the reaction of n-butyl radi...

168 citations


Journal ArticleDOI
TL;DR: Different types of noncovalent interactions such as halogen bond, hydrogen bond, and dihalogen bond are analyzed and it was found that the mechanism of the formation of complexes linked through various interactions is generally the same as that known for the hydrogen bond formation.
Abstract: Different types of noncovalent interactions such as, for example, halogen bond, hydrogen bond, and dihalogen bond are analyzed. The analysis is based on ab initio calculations which were performed on complexes of the F3CCl molecule. This choice is connected with the features of the Cl atom which may act as the Lewis acid and also as the Lewis base center. Such a dual role is a consequence of the existence of negative and positive regions of the electrostatic potential of the Cl center. Hence, the F3CCl molecule forms complexes linked by various interactions. The formation of the complexes leads to the electron charge redistribution which is reflected in the quantum theory of atoms in molecules (QTAIM) characteristics. Numerous correlations and tendencies were found here between QTAIM, geometrical and energetic parameters. It was found that the mechanism of the formation of complexes linked through various interactions is generally the same as that known for the hydrogen bond formation. The dependencies an...

166 citations


Journal ArticleDOI
TL;DR: A series of 15 donor-π-acceptor type vinyl coupled triazene derivatives with different acceptors with good NLO and optoelectronic properties are designed, and 10 out of 15 designed candidates are found to have excellent N LO and optoeselectronic properties.
Abstract: Triazenes are a unique class of polyazo compounds containing three consecutive nitrogen atoms in an acyclic arrangement and are promising NLO candidates. In the present work, a series of 15 donor-π-acceptor type vinyl coupled triazene derivatives (VCTDs) with different acceptors (−NO2, −CN, and −COOH) have been designed, and their structure, nonlinear response, and optoelectronic properties have been studied using density functional theory and time-dependent density functional theory methods. B3LYP/6-311g(d,p) optimized geometries of the designed candidates show delocalization from the acceptor to donor through a π-bridge. Molecular orbital composition analysis reveals that HOMO is stabilized by the π-bridge, whereas acceptors play a major role in the stabilization of LUMO. Among the three acceptors, nitro derivatives are found to be efficient NLO candidates, and tri- and di-substituted cyano and carboxylic acid derivatives also show reasonably good NLO response. The effect of solvation on these propertie...

Journal ArticleDOI
TL;DR: Simulations using a global chemical transport model suggest that most of the methacrolein hydroxy peroxy radicals formed in the atmosphere undergo isomerization and decomposition.
Abstract: Peroxy radicals formed by addition of OH and O2 to the olefinic carbon atoms in methacrolein react with NO to form methacrolein hydroxy nitrate and hydroxyacetone. We observe that the ratio of these two compounds, however, unexpectedly decreases as the lifetime of the peroxy radical increases. We propose that this results from an isomerization involving the 1,4-H-shift of the aldehydic hydrogen atom to the peroxy group. The inferred rate (0.5 ± 0.3 s–1 at T = 296 K) is consistent with estimates obtained from the potential energy surface determined by high level quantum calculations. The product, a hydroxy hydroperoxy carbonyl radical, decomposes rapidly, producing hydroxyacetone and re-forming OH. Simulations using a global chemical transport model suggest that most of the methacrolein hydroxy peroxy radicals formed in the atmosphere undergo isomerization and decomposition.

Journal ArticleDOI
TL;DR: The studies reveal that the substantial barrier for transition from the closed (cyclic) form of the radical anion to the linear form, denoted o-EC(-, results in a relatively long lifetime of the c-EC(-) allowing this compound to react with other singly reduced alkyl carbonates.
Abstract: We have conducted quantum chemistry calculations and gas- and solution-phase reactive molecular dynamics simulation studies of reactions involving the ethylene carbonate (EC) radical anion EC(-) using the reactive force field ReaxFF. Our studies reveal that the substantial barrier for transition from the closed (cyclic) form, denoted c-EC(-), of the radical anion to the linear (open) form, denoted o-EC(-), results in a relatively long lifetime of the c-EC(-) allowing this compound to react with other singly reduced alkyl carbonates. Using ReaxFF, we systematically investigate the fate of both c-EC(-) and o-EC(-) in the gas phase and EC solution. In the gas phase and EC solutions with a relatively low concentration of Li(+)/x-EC(-) (where x = o or c), radical termination reactions between radical pairs to form either dilithium butylene dicarbonate (CH(2)CH(2)OCO(2)Li)(2) (by reacting two Li(+)/o-EC(-)) or ester-carbonate compound (by reacting Li(+)/o-EC(-) with Li(+)/c-EC(-)) are observed. At higher concentrations of Li(+)/x-EC(-) in solution, we observe the formation of diradicals which subsequently lead to formation of longer alkyl carbonates oligomers through reaction with other radicals or, in some cases, formation of (CH(2)OCO(2)Li)(2) through elimination of C(2)H(4). We conclude that the local ionic concentration is important in determining the fate of x-EC(-) and that the reaction of c-EC(-) with o-EC(-) may compete with the formation of various alkyl carbonates from o-EC(-)/o-EC(-) reactions.

Journal ArticleDOI
TL;DR: A detailed understanding of the factors influencing the autoxidative stability of ether- and N,N-dialkylamide-based solvents provides several strategies for designing molecules with enhanced air/O(2) stability, comparable or superior to that of structurally related hydrocarbons.
Abstract: Finding suitable solvents remains one of the most elusive challenges in rechargeable, nonaqueous Li–air battery technology. Although ether and amides are identified as stable classes of aprotic solvents against nucleophilic attack by superoxide, many of them are prone to autoxidation under oxygen atmosphere. In this work, we use density functional theory calculations coupled with an implicit solvent model to investigate the autoxidative stability of ether- and N,N-dialkylamide-based solvents. The change in the activation free energy for the C–H bond cleavage by O2 is consistent with the extent of peroxide production for each class of solvent. Conversely, the thermodynamic stability alone is not sufficient to account for the observed variation in solvent reactivity toward O2. A detailed understanding of the factors influencing the autoxidative stability provides several strategies for designing molecules with enhanced air/O2 stability, comparable or superior to that of structurally related hydrocarbons. Th...

Journal ArticleDOI
TL;DR: Electron paramagnetic resonance spin trapping using the commonly used spin trap, 5,5-dimethyl-1-pyrroline N-oxide (DMPO), has been employed in the detection of sulfur dioxide and SO, and thermodynamic data supports evidence for the radical addition pathway over the nucleophilic addition mechanism.
Abstract: Radical forms of sulfur dioxide (SO(2)), sulfite (SO(3)(2-)), sulfate (SO(4)(2-)), and their conjugate acids are known to be generated in vivo through various chemical and biochemical pathways. Oxides of sulfur are environmentally pervasive compounds and are associated with a number of health problems. There is growing evidence that their toxicity may be mediated by their radical forms. Electron paramagnetic resonance (EPR) spin trapping using the commonly used spin trap, 5,5-dimethyl-1-pyrroline N-oxide (DMPO), has been employed in the detection of SO(3)(•-) and SO(4)(•-). The thermochemistries of SO(2)(•-), SO(3)(•-), SO(4)(•-), and their respective conjugate acids addition to DMPO were predicted using density functional theory (DFT) at the PCM/B3LYP/6-31+G**//B3LYP/6-31G* level. No spin adduct was observed for SO(2)(•-) by EPR, but an S-centered adduct was observed for SO(3)(•-)and an O-centered adduct for SO(4)(•-). Determination of adducts as S- or O-centered was made via comparison based on qualitative trends of experimental hfcc's with theoretical values. The thermodynamics of the nonradical addition of SO(3)(2-) and HSO(3)(-) to DMPO followed by conversion to the corresponding radical adduct via the Forrester-Hepburn mechanism was also calculated. Adduct acidities and decomposition pathways were investigated as well, including an EPR experiment using H(2)(17)O to determine the site of hydrolysis of O-centered adducts. The mode of radical addition to DMPO is predicted to be governed by several factors, including spin population density, and geometries stabilized by hydrogen bonds. The thermodynamic data supports evidence for the radical addition pathway over the nucleophilic addition mechanism.

Journal ArticleDOI
Hongxia Bu1, Mingwen Zhao1, Hongyu Zhang1, Xiaopeng Wang1, Yan Xi1, Zhenhai Wang1 
TL;DR: First-principles calculations on the stable configurations and electronic structures of graphdiyne doped with boron-nitrogen (BN) units show that BN unit prefers to replace the sp-hybridized carbon atoms in the chain at a low doping rate, forming linear BN atomic chains between carbon hexagons.
Abstract: Graphdiyne, consisting of sp- and sp(2)-hybridized carbon atoms, is a new member of carbon allotropes which has a natural band gap ~1.0 eV. Here, we report our first-principles calculations on the stable configurations and electronic structures of graphdiyne doped with boron-nitrogen (BN) units. We show that BN unit prefers to replace the sp-hybridized carbon atoms in the chain at a low doping rate, forming linear BN atomic chains between carbon hexagons. At a high doping rate, BN units replace first the carbon atoms in the hexagons and then those in the chains. A comparison study indicates that these substitution reactions may be easier to occur than those on graphene which composes purely of sp(2)-hybridized carbon atoms. With the increase of BN component, the band gap increases first gradually and then abruptly, corresponding to the transition between the two substitution motifs. The direct-band gap feature is intact in these BN-doped graphdiyne regardless the doping rate. A simple tight-binding model is proposed to interpret the origin of the band gap opening behaviors. Such wide-range band gap modification in graphdiyne may find applications in nanoscaled electronic devices and solar cells.

Journal ArticleDOI
TL;DR: The recently developed correlation consistent Composite Approach for transition metals (ccCA-TM) was utilized to compute the thermochemical properties for a collection of 225 inorganic molecules containing first row (3d) transition metals, ranging from the monohydrides to larger organometallics such as Sc(C(5)H(5))(3) and clusters such as (CrO(3))( 3).
Abstract: The recently developed correlation consistent Composite Approach for transition metals (ccCA-TM) was utilized to compute the thermochemical properties for a collection of 225 inorganic molecules containing first row (3d) transition metals, ranging from the monohydrides to larger organometallics such as Sc(C5H5)3 and clusters such as (CrO3)3. Ostentatiously large deviations of ccCA-TM predictions stem mainly from aging and unreliable experimental data. For a subset of 70 molecules with reported experimental uncertainties less than or equal to 2.0 kcal mol–1, regardless of the presence of moderate multireference character in some molecules, ccCA-TM achieves transition metal chemical accuracy of ±3.0 kcal mol–1 as defined in our earlier work [J. Phys. Chem. A 2007, 111, 11269–11277] by giving a mean absolute deviation of 2.90 kcal mol–1 and a root-mean-square deviation of 3.91 kcal mol–1. As subsets are constructed with decreasing upper limits of reported experimental uncertainties (5.0, 4.0, 3.0, 2.0, and 1...

Journal ArticleDOI
TL;DR: Nonstatistical dynamics results in nonstatistical partitioning of the available energy to XCH(3) +Y(-) reaction products, and the relative translational energy and temperature dependencies of the S(N)2 rate constants are not accurately given by statistical theory.
Abstract: Extensive classical chemical dynamics simulations of gas-phase X(-) + CH(3)Y → XCH(3) + Y(-) S(N)2 nucleophilic substitution reactions are reviewed and discussed and compared with experimental measurements and predictions of theoretical models. The primary emphasis is on reactions for which X and Y are halogen atoms. Both reactions with the traditional potential energy surface (PES), which include pre- and postreaction potential energy minima and a central barrier, and reactions with nontraditional PESs are considered. These S(N)2 reactions exhibit important nonstatistical atomic-level dynamics. The X(-) + CH(3)Y → X(-)---CH(3)Y association rate constant is less than the capture model as a result of inefficient energy transfer from X(-)+ CH(3)Y relative translation to CH(3)Y rotation and vibration. There is weak coupling between the low-frequency intermolecular modes of the X(-)---CH(3)Y complex and higher frequency CH(3)Y intramolecular modes, resulting in non-RRKM kinetics for X(-)---CH(3)Y unimolecular decomposition. Recrossings of the [X--CH(3)--Y](-) central barrier is important. As a result of the above dynamics, the relative translational energy and temperature dependencies of the S(N)2 rate constants are not accurately given by statistical theory. The nonstatistical dynamics results in nonstatistical partitioning of the available energy to XCH(3) +Y(-) reaction products. Besides the indirect, complex forming atomic-level mechanism for the S(N)2 reaction, direct mechanisms promoted by X(-) + CH(3)Y relative translational or CH(3)Y vibrational excitation are possible, e.g., the roundabout mechanism.

Journal ArticleDOI
TL;DR: Concerted reactions are proposed to be keys to understanding thermal decomposition of glucose in the absence of ionic chemistry, including molecular catalysis by ROH molecules such as H(2)O, other glucose molecules, and most of the intermediates and products.
Abstract: Concerted reactions are proposed to be keys to understanding thermal decomposition of glucose in the absence of ionic chemistry, including molecular catalysis by ROH molecules such as H2O, other glucose molecules, and most of the intermediates and products. Concerted transition states, elementary-reaction pathways, and rate coefficients are computed for pyrolysis of β-d-glucose (β-d-glucopyranose), the monomer of cellulose, and for related molecules, giving an improved and elementary-reaction interpretation of the reaction network proposed by Sanders et al. (J. Anal. Appl. Pyrolysis, 2003, 66, 29–50). Reactions for ring-opening and formation, ring contraction, retro-aldol condensation, keto–enol tautomerization, and dehydration are included. The dehydration reactions are focused on bicyclic ring formations that lead to levoglucosan and 1,6-β-d-anhydrousglucofuranose. The bimolecular ROH-assisted reactions are found to have lower activation energy compared to the unimolecular reactions. The same dehydratio...

Journal ArticleDOI
TL;DR: It is found that although the 3s Rydberg state lies below the optically bright ππ* state, little population gets trapped on this state and is largely a spectator in the photodynamics, with little effect on the quenching mechanism or excited state lifetime.
Abstract: We use the ab initio multiple spawning method with potential energy surfaces and nonadiabatic coupling vectors computed from multistate multireference perturbation theory (MSPT2) to follow the dyna...

Journal ArticleDOI
TL;DR: Cl, S, and P atoms have previously been shown as capable of engaging in a noncovalent bond with the N atom on another molecule, and the effects of substituents B on the former atoms on the strength of this bond are examined, and it is found that the binding energy climbs in the order of B < NH(2) < CF(3) < OH < Cl < NO( 2) < F.
Abstract: Cl, S, and P atoms have previously been shown as capable of engaging in a noncovalent bond with the N atom on another molecule. The effects of substituents B on the former atoms on the strength of this bond are examined, and it is found that the binding energy climbs in the order B = CH3 < NH2 < CF3 < OH < Cl < NO2 < F. However, there is some variability in this pattern, particularly for the NO2 group. The A···N bonds (A = Cl, S, P) can be quite strong, amounting to as much as 10 kcal/mol. The binding energy arises from approximately equal contributions from its induction and electrostatic components, although the former becomes more dominant for the stronger bonds. The induction energy is due in large measure to the transfer of charge from the N lone pair to a B–A σ* antibonding orbital of the electron-acceptor molecule containing Cl, S, or P. These A···N bonds typically represent the lowest-energy structure on each potential energy surface, stronger than H-bonds such as NH···F, CH···N, or SH···N.

Journal ArticleDOI
TL;DR: An Atoms-in-Molecules (AIM) study has confirmed that specific C-F···F-C interactions are indeed present, and are not due simply to crystal packing.
Abstract: The solid state structures of three compounds that contain a perfluorinated chain, CF3(CF2)(5)CH2CH(CH3)CO2H, CF3(CF2)(5)(CH2)(4)(CF2)(5)CF3 and {CF3(CF2)(5)CH2CH2}(3)P=O have been compared and a number of C-F center dot center dot center dot F-C and C-F center dot center dot center dot H-C interactions that are closer than the sum of the van der Waals radii have been identified. These interactions have been probed by a comprehensive computational chemistry investigation and the stabilizing energy between dimeric fragments was found to be 0.26-29.64 kcal/mol, depending on the type of interaction. An Atoms-in-Molecules (AIM) study has confirmed that specific C-F center dot center dot center dot F-C interactions are indeed present, and are not due simply to crystal packing. The weakly stabilizing nature of these interactions has been utilized in the physisorption of a selected number of compounds containing long chain perfluorinated ponytails onto a perfluorinated self-assembled monolayer, which has been characterized by IRRAS (Infrared Reflection Absorption Spectroscopy).

Journal ArticleDOI
TL;DR: A calibration source is set up that can provide a stable and adjustable concentration of H(2)SO(4) and offers the possibility for future CIMS intercomparison measurements by providing defined and stable concentrations of sulfuric acid.
Abstract: The accurate measurement of the gaseous sulfuric acid concentration is crucial within many fields of atmospheric science. Instruments utilizing chemical ionization mass spectrometry (CIMS) measuring H(2)SO(4), therefore, require a careful calibration. We have set up a calibration source that can provide a stable and adjustable concentration of H(2)SO(4). The calibration system initiates the production of sulfuric acid through the oxidation of SO(2) by OH. The hydroxyl radical is produced by UV photolysis of water vapor. A numerical model calculates the H(2)SO(4) concentration provided at the outlet of the calibration source. From comparison of this concentration and the signals measured by CIMS, a calibration factor is derived. This factor is evaluated to be 1.1 × 10(10) cm(-3), which is in good agreement with values found in the literature for other CIMS instruments measuring H(2)SO(4). The calibration system is described in detail and the results are discussed. Because the setup is external to the CIMS instrument, it offers the possibility for future CIMS intercomparison measurements by providing defined and stable concentrations of sulfuric acid.

Journal ArticleDOI
TL;DR: The electrical conduction mechanisms of semicrystalline thermoplastic parylene C (-H(2)C-C(6)H(3)Cl-CH-CH(2)-)(n) thin films were studied in large temperature and frequency regions and the Elliot's parameters are determined.
Abstract: The electrical conduction mechanisms of semicrystalline thermoplastic parylene C (-H(2)C-C(6)H(3)Cl-CH(2)-)(n) thin films were studied in large temperature and frequency regions. The alternative current (AC) electrical conduction in parylene C is governed by two processes which can be ascribed to a hopping transport mechanism: correlated barrier hopping (CBH) model at low [77-155 K] and high [473-533 K] temperature and the small polaron tunneling mechanism (SPTM) from 193 to 413 K within the framework of the universal law of dielectric response. The conduction mechanism is explained with the help of Elliot's theory, and the Elliot's parameters are determined. From frequency- and temperature-conductivity characteristics, the activation energy is found to be 1.27 eV for direct current (DC) conduction interpreted in terms of ionic conduction mechanism. The power law dependence of AC conductivity is interpreted in terms of electron hopping with a density N(E(F)) (~10(18) eV cm(-3)) over a 0.023-0.03 eV high barrier across a distance of 1.46-1.54 A.

Journal ArticleDOI
TL;DR: The observation of the Fermi doublet allows us to infer that CO(2) essentially preserves its linear geometry and that the nature and strength of the interactions with its environment should be comparable to those existing in organic liquids and other IL as well.
Abstract: The unusual solubility of carbon dioxide in 1-butyl-3-methylimidazolium acetate (Bmim Ac) has been studied by Raman spectroscopy and DFT calculations. It is shown that the solubility results from the existence of two distinct solvation regimes. In the first one (CO(2) mole fraction ≤ 0.35), the usual Fermi dyad is not observed, a fact never reported before for binary mixtures with organic liquids or ionic liquids (IL). Strong experimental evidence complemented by effective DFT modeling shows that this regime is dominated by a chemical reaction leading to the carboxylation of the imidazolium ring accompanied by acetic acid formation. The reactive scheme proposed involves two concerted mechanisms, which are a proton exchange process between the imidazolium cation and the acetate anion and the carboxylation process itself initiated from the formation of "transient" CO(2)-1-butyl-3-methylimidazole 2-ylidene carbene species. In that sense, CO(2) triggers the carboxylation reaction. Moreover, this dynamic picture circumvents consideration of a long-lived carbene formation in dense phase. The second regime is characterized by the detection of the CO(2) Fermi dyad showing that the carboxylation reaction has been strongly moderated. This finding has been interpreted as due to the interaction of the acetic acid molecules with the COO group of acetate anions involved in monodentate forms with the cation. The observation of the Fermi doublet allows us to infer that CO(2) essentially preserves its linear geometry and that the nature and strength of the interactions with its environment should be comparable to those existing in organic liquids and other IL as well. These results have been supported by DFT calculations showing that the CO(2) molecule interacts with energetically equivalent coexisting structures and that its geometry departs only slightly from the linearity. Finally, we find that the CO(2) solvation in Bmim Ac and 1-butyl-3-methylimidazolium trifluoroacetate (Bmim TFA) cannot be straightforwardly compared neither in the first regime due to the existence of a chemical reaction nor in the second regime because CO(2) interacts with a variety of environments not only consisting of ions pairs like in Bmim TFA but also with carboxylate and acetic acid molecule.

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TL;DR: This study demonstrates that it is possible to describe the nature of chemical bond by observables rather than by ad hoc quantities such as atomic populations or molecular orbitals.
Abstract: To assess the nature of chemical bonds in uranyl(VI) complexes with Lewis base ligands, such as F(-), Cl(-), OH(-), CO(3)(2-), and O(2)(2-), we have used quantum chemical observables, such as the bond distances, the internal symmetric/asymmetric uranyl stretch frequencies, and the electron density with its topology analyzed using the quantum theory of atoms-in-molecules. This analysis confirms that complex formation induces a weakening of the uranium-axial oxygen bond, reflected by the longer U-O(yl) bond distance and reduced uranyl-stretching frequencies. The strength of the ligand-induced effect increases in the order H(2)O < Cl(-) < F(-) < OH(-) < CO(3)(2-) < O(2)(2-). In-depth analysis reveals that the trend across the series does not always reflect an increasing covalent character of the uranyl-ligand bond. By using a point-charge model for the uranyl tetra-fluoride and tetra-chloride complexes, we show that a significant part of the uranyl bond destabilization arises from purely electrostatic interactions, the remaining part corresponding either to charge-transfer from the negatively charged ligands to the uranyl unit or a covalent interaction. The charge-transfer and the covalent interaction are qualitatively different due to the absence of a charge build up in the uranyl-halide bond region in the latter case. In all the charged complexes, the uranyl-ligand bond is best described as an ionic interaction. However, there are covalent contributions in the very stable peroxide complex and, to some extent, also in the carbonate complex. This study demonstrates that it is possible to describe the nature of chemical bond by observables rather than by ad hoc quantities such as atomic populations or molecular orbitals.

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TL;DR: Combining information from X-ray emission spectroscopy and scattering, the excitation fraction as well as the temperature and density changes of the solvent can be closely followed on the subnanosecond time scale of the HS lifetime, allowing the detection of an ultrafast change in bulk solvent density.
Abstract: We have studied the photoinduced low spin (LS) to high spin (HS) conversion of [Fe(bipy)(3)](2+) in aqueous solution. In a laser pump/X-ray probe synchrotron setup permitting simultaneous, time-resolved X-ray diffuse scattering (XDS) and X-ray spectroscopic measurements at a 3.26 MHz repetition rate, we observed the interplay between intramolecular dynamics and the intermolecular caging solvent response with better than 100 ps time resolution. On this time scale, the initial ultrafast spin transition and the associated intramolecular geometric structure changes are long completed, as is the solvent heating due to the initial energy dissipation from the excited HS molecule. Combining information from X-ray emission spectroscopy and scattering, the excitation fraction as well as the temperature and density changes of the solvent can be closely followed on the subnanosecond time scale of the HS lifetime, allowing the detection of an ultrafast change in bulk solvent density. An analysis approach directly utilizing the spectroscopic data in the XDS analysis effectively reduces the number of free parameters, and both combined permit extraction of information about the ultrafast structural dynamics of the caging solvent, in particular, a decrease in the number of water molecules in the first solvation shell is inferred, as predicted by recent theoretical work.

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TL;DR: Photophysical properties of diketopyrrolopyrrole derivatives substituted with oligothiophenes are investigated and comparison of absorption and fluorescence excitation spectra show the presence of both J- and H-type absorption bands in the solid phase.
Abstract: Photophysical properties of diketopyrrolopyrrole derivatives substituted with oligothiophenes are investigated. All compounds are found to be fluorescent both in solution and in the solid phase. At low temperature in the solid, fluorescence originates from excimer-like excited states. Comparison of absorption and fluorescence excitation spectra taken under matrix isolated conditions and on solid films show the presence of both J- and H-type absorption bands in the solid phase. Quantum-chemical calculations, including exciton–phonon coupling to account for deviations from the Born–Oppenheimer approximation, are performed to simulate the band shape of the lowest absorption band in the molecular solid. The joint presence of J- and H-bands is explained by the presence of two molecules in the unit cell. The Davydov splitting is substantial for molecules with linear alkyl substituents on the nitrogen atom (on the order of 0.2 eV) but can be reduced to almost zero by introducing branching at the β-carbon of the ...

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TL;DR: The free energies of formation of the heterodimer and heterotrimer clusters suggest that dicarboxylic acids can contribute to the aerosol nucleation process by binding to sulfuric acid and ammonia.
Abstract: Dicarboxylic acids are important products from photooxidation of volatile organic compounds and are believed to play an important role in the formation and growth of atmospheric secondary organic a...

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TL;DR: It is found in this work that the spin component scaling technique can effectively be used to dramatically improve the performance of MP2 and MP2 variants, with overall errors being reduced by factors of about 1.5-2.5.
Abstract: For many years, MP2 served as the principal method for the treatment of noncovalent interactions. Until recently, this was the only technique that could be used to produce reasonably accurate binding energies, with binding energy errors generally below 35%, at a reasonable computational cost. The past decade has seen the development of many new methods with improved performance for noncovalent interactions, several of which are based on MP2. Here, we assess the performance of MP2, LMP2, MP2-F12, and LMP2-F12, as well as spin component scaled variants (SCS) of these methods, in terms of their abilities to produce accurate interaction energies for binding motifs commonly found in organic and biomolecular systems. Reference data from the newly developed S66 database of interaction energies are used for this assessment, and a further set of 38 complexes is used as a test set for SCS methods developed herein. The strongly basis set-dependent nature of MP2 is confirmed in this study, with the SCS technique greatly reducing this behavior. It is found in this work that the spin component scaling technique can effectively be used to dramatically improve the performance of MP2 and MP2 variants, with overall errors being reduced by factors of about 1.5–2. SCS versions of all MP2 variants tested here are shown to give similarly accurate overall results.