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Showing papers in "Marine Biology in 2007"


Journal ArticleDOI
TL;DR: It is argued that pontoons and pilings represent beachheads (i.e. entry points for invasion) for many nonindigenous epibiota and so enhance the spread and establishment of NIS in estuaries and so be a serious threat to native biodiversity.
Abstract: We identified different distributions of marine nonindigenous species (NIS) and native species on some artificial structures versus natural reefs and using experimental manipulations, revealed some possible causal mechanisms. In well-established subtidal assemblages, numbers of NIS were 1.5–2.5 times greater on pontoons or pilings than on rocky reefs, despite the local species pool of natives being up to 2.5 times greater than that of NIS. Conversely, on reefs and seawalls, numbers of native species were up to three times greater than numbers of NIS. Differential recruitment to different positions and types of surfaces appeared to influence distribution patterns. NIS recruited well to most surfaces, particularly concrete surfaces near the surface of the water, whilst natives occurred infrequently on wooden surfaces. The position of rocky reefs and seawalls close to the shore and to the seabed appeared to make them favourable for the recruitment of natives, but this positioning alone does not hinder the recruitment of NIS. We argue that pontoons and pilings represent beachheads (i.e. entry points for invasion) for many nonindigenous epibiota and so enhance the spread and establishment of NIS in estuaries. Habitat creation in estuaries may, therefore, be a serious threat to native biodiversity.

434 citations


Journal ArticleDOI
TL;DR: The relationship between visual estimates of topography and species richness is strongest with fish 10–30 cm total length (TL), abundance of fish within this size category also correlating positively with topographic visual assessments.
Abstract: Visual assessments of topographic habitat structure and benthos on coral reefs were appraised using quantitative data collected from 16 replicate surveys within each of 21 sites on Seychelles reefs. Results from visual assessments of reef benthos were similar to those obtained using techniques frequently used to assess benthic complexity and composition. Visual estimates of habitat topography were correlated with rugosity, reef height and holes of 10–70 cm diameter, whilst visual estimates of benthic composition were very similar to those obtained from line intercept transects. Visual estimates of topography correlated strongly with species richness of fish communities and explained 42% of the variation in these data. The relationship between visual estimates of topography and species richness is strongest with fish 10–30 cm total length (TL), abundance of fish within this size category also correlating positively with topographic visual assessments. Visual techniques are prone to observer bias, however with regular training they can be used to quickly provide a reliable and effective means of assessing habitat complexity and benthos on coral reefs.

349 citations


Journal ArticleDOI
TL;DR: Satellite telemetry studies of 20 adult and sub-adult white sharks in the eastern North Pacific during 1999–2005 revealed long distance seasonal migrations from the coast of California to an offshore focal area 2,500 km west of the Baja Peninsula, as well as the Hawaii Islands.
Abstract: Satellite telemetry studies of 20 adult and sub- adult white sharks (360-530 cm estimated total length (TL)) in the eastern North Pacific during 1999-2005 re- vealed long distance seasonal migrations from the coast of California to an offshore focal area 2,500 km west of the Baja Peninsula, as well as the Hawaii Islands. Three tags were recovered allowing detailed behavioral analyses, including one shark's migration cycle from the coast to the offshore focal area and back. While near pinniped rook- eries in autumn and winter, sharks avoided the surface and used water to 50 m depth, consistent with a silhouette- based hunting strategy. Offshore migrations were initiated during November-March and followed periods of decreasing pinniped abundance. Migrations were highly directed, taking 23 ± 5 days to reach the offshore focal area along similar paths among sharks and years, defining a migration corridor. Sharks exhibited a broad depth distri- bution (0-644 m) in the offshore focal area, and remained there for up to 167 days during spring and summer, though primary productivity and fishery data suggest that forage resources are scarcer there than in other regions of the eastern North Pacific. Archival data from one shark re- vealed intensive oscillatory movements while in the off- shore focal area, a behavior that may be related to foraging or mating. Sharks traveling to Hawaii remained near the islands up to 122 days, potentially feeding on pelagic fishes and marine mammals that concentrate around the islands.

238 citations


Journal ArticleDOI
TL;DR: It is demonstrated that the movement patterns, diving behavior, and thermal biology of Atlantic bluefin tuna change significantly at different stages of the breeding migration and can be used to define spawning location and timing.
Abstract: Electronic tags were used to examine the biology of Atlantic bluefin tuna (Thunnus thynnus L.) on their breeding grounds in the Gulf of Mexico (GOM). The hypothesis that movement patterns, div- ing behavior, and thermal biology change during dif- ferent stages of the breeding migration was tested. Mature Atlantic bluefin tuna tagged in the western Atlantic and the GOM, were on their breeding grounds from February to June for an average of 39 ± 11 days. The bluefin tuna experienced significantly warmer mean sea surface temperatures (SSTs) within the GOM (26.4 ± 1.6� C) than outside the GOM (20.2 ± 1.9� C). As the bluefin tuna entered and exited the GOM, the fish dove to daily maximum depths of 568 ± 50 and 580 ± 144 m, respectively, and exhibited directed movement paths to and from the localized breeding areas. During the putative breeding phase, the bluefin tuna had significantly shallower daily max- imum depths (203 ± 76 m), and exhibited shallow oscillatory dives during the night. The movement paths of the bluefin tuna during the breeding phase were significantly more residential and sinuous. The heat transfer coefficients (K) were calculated for a bluefin tuna in the GOM using the recorded ambient and body temperatures. The K for this fish increased rapidly at the high ambient temperatures encountered in the GOM, and was significantly higher at night in the breeding phase when the fish was exhibiting shallow oscillatory dives. This suggests that the fish were behaviorally and physiologically thermoregulating in the Gulf of Mexico. This study demonstrates that the movement patterns, diving behavior, and thermal biology of Atlantic bluefin tuna change significantly at different stages of the breeding migration and can be used to define spawning location and timing.

207 citations


Journal ArticleDOI
TL;DR: The velvet swimming crab Necora puber appears less sensitive to low pH than many other species examined acutely, however, local acidification as a result of ocean CO2 dispersal or leakage from geological sequestration is likely to compromise even this species.
Abstract: We investigated the effect of different levels of hypercapnia-induced acidification (pH = 796, 731, 674 and 605) on the extracellular acid base balance of a shallow-water crustacean, the velvet swimming crab Necora puber over a period of 16 days Any extracellular acidosis incurred was completely compensated by an increase in bicarbonate Bicarbonate was partly, but not wholly, supplied by dissolution of the exoskeleton This compensation was sustained for 16 days under all experimental treatments with two exceptions First there was some evidence of extracellular acidosis in crabs after 16 days at pH = 674 Second at the lowest environmental pH (605) there was a marked uncompensated acidosis after 24 h Necora puber appears less sensitive to low pH than many other species examined acutely However, local acidification as a result of ocean CO2 dispersal or leakage from geological sequestration is likely to compromise even this species

194 citations


Journal ArticleDOI
TL;DR: Habitat utilization of yellowfin, presented as monthly composite horizontal and vertical distributions, indicates confined geographical distributions, apparently resulting from an affinity to an area of high prey availability.
Abstract: Sixty-eight yellowfin tuna, Thunnus albacares, (60-135 cm fork length) were caught and released with implanted archival tags offshore off Baja California, Mexico, during October 2002 and October 2003. Thirty-six fish (53%) were recaptured and the data were downloaded from all 36 recovered tags. Time at liberty ranged from 9 to 1,161 days, and the data were analyzed for the 20 fish that were at liberty for 154 or more days. The accuracy in the position estimates, derived from light-level longitude data and sea-surface temperatures (SSTs) based latitude, is about 0.41° in longitude and 0.82° in latitude, in this region. The movement paths, derived from position estimates, for the 20 yellowfin indicated that 19 (95%) remained within 1,445 km of their release locations. The estimated mean velocity along movement paths was 77 km/day. The southern and northern seasonal movement paths observed for yellowfin off Baja California are influenced by the seasonal movements of the 18°C SST isotherm. Cyclical movements to and from suitable spawning habitat (≥24°C SST) was observed only for mature fish. For the 12 fish that demonstrated site fidelity, the mean 95 and 50% utilization distributions were 258,730 km2 and 41,260 km2, respectively. Evaluations of the timed depth records resulted in discrimination of four distinct behaviors. When exhibiting type-1 diving behavior (78.1% of all days at liberty) the fish remained at depths less than 50 m at night and did not dive to depths greater than about 100 m during the day. Type-2 diving behavior (21.2% of all days at liberty) was characterized by ten or more dives in excess of 150 m during the day. Type-2 diving behavior is apparently a foraging strategy for fish targeting prey organisms of the deep-scattering layer during the day, following nighttime foraging within the mixed layer on the same prey. Yellowfin tuna exhibited occasional deep-diving behavior, and some dives exceeded 1,000 m, where ambient temperatures were less than 5°C. Surface-oriented behavior, defined as the time fish remained at depths less than 10 m for more than 10 min, were evaluated. The mean number and duration of surface-oriented events per day for all fish was 14.3 and 28.5 min, respectively. Habitat utilization of yellowfin, presented as monthly composite horizontal and vertical distributions, indicates confined geographical distributions, apparently resulting from an affinity to an area of high prey availability. The vertical distributions indicate greater daytime depths in relation to a seasonally deeper mixed layer and a greater proportion of daytime at shallower depths in relation to a seasonally shallower mixed layer.

178 citations


Journal ArticleDOI
TL;DR: The most reliable features for repeat identification in multiple years were the pigment patterns on the gill flaps, pelvic fins, and caudal fins.
Abstract: A systematic, reliable method for identifying white sharks, Carcharodon carcharias Linnaeus, from underwater photographs was developed and applied to examine site fidelity at Guadalupe Island, Mexico (29˚N, 118˚W). The most reliable features for repeat identification in multiple years were the pigment patterns on the gill flaps, pelvic fins, and caudal fins. Pigment patterns in all three regions were asymmetrical on the right and left sides making it necessary to photograph both sides to catalog each individual. However, once cataloged, an individual could be re-identified using a partial body image. Using this method, 73 individuals were identified between 2001 and 2005. Site fidelity was indicated through repeated annual sightings of individuals with 78% of the identified sharks observed over at least 2 years. Males were found to arrive at Guadalupe Island as early as July and females in September. Peak abundances at the site occurred August–December. The sex ratio was not significantly different from unity in 2002, 2004, and 2005. This monitoring technique has shown Guadalupe Island to be an important white shark aggregation site in the eastern Pacific.

166 citations


Journal ArticleDOI
TL;DR: Sequence analysis of the microbial communities showed a diversity of metabolic capabilities among the microbes of the lowδ15N group, which are lacking in the high δ15 N group, further supporting metabolic differences between the two groups.
Abstract: Many sponge species contain large and diverse communities of microorganisms. Some of these microbes are suggested to be in a mutualistic interaction with their host sponges, but there is little evidence to support these hypotheses. Stable nitrogen isotope ratios of sponges in the Key Largo, Florida (USA) area grouped sponges into species with relatively low δ15N ratios and species with relatively high δ15N ratios. Using samples collected in June 2002 from Three Sisters Reef and Conch Reef in the Key Largo, Florida area, transmission electron microscopy (TEM) and denaturing gradient gel electrophoresis were performed on tissues of the sponges Ircinia felix and Aplysina cauliformis, which are in the low δ15N group, and on tissue of the sponge Niphates erecta, which is in the high δ15N group. Results showed that I. felix and A. cauliformis have large and diverse microbial communities, while N. erecta has a low biomass of one bacterial strain. As the low δ15N ratios indicated a microbial input of nitrogen, these results suggested that I. felix and A. cauliformis were receiving nitrogen from their associated microbial community, while N. erecta was obtaining nitrogen solely from external sources. Sequence analysis of the microbial communities showed a diversity of metabolic capabilities among the microbes of the low δ15N group, which are lacking in the high δ15N group, further supporting metabolic differences between the two groups. This research provides support for hypotheses of mutualisms between sponges and their associated microbial communities.

147 citations


Journal ArticleDOI
TL;DR: The finding of considerable genetic diversity within the Atlantic sector alone suggests that the recognized diversity of Antarctica’s benthic marine life may be underestimated, and will rise dramatically with phylogeographic analyses of putative widespread species.
Abstract: Despite considerable interest in physiology, evolution and life history of Antarctic marine inverte- brates, only a limited number of studies have examined the genetic variability and diversity patterns of these organisms. Moreover, understanding and characterizing patterns of Antarctic biodiversity has taken on a degree of urgency because of potential impacts of global warming. To expand an understanding of the evolutionary history of Antarctic marine invertebrates, the genetic diversity of the crinoid Promachocrinus kerguelensis Carpenter, 1888 was investigated, which is documented to have a circum- polar distribution extending to subantarctic islands. Spec- imens of P. kerguelensis were collected from the western side of the Antarctic Peninsula, and the subantarctic islands South Georgia, South Sandwich and Bouvetoya Island from 2001 to 2004. P. kerguelensis was previously subject to morphological review that conWrmed the taxo- nomic recognition of only one species. The wide distri- bution and reported high dispersal capability for P. kerguelensis predicts one large panmictic population. In contrast, nucleotide sequence data from mitochondrial cytochrome oxidase subunit I and cytochrome b genes, collected herein, reveal distinct genetic structure and cryptic speciation within P. kerguelensis. In the Antarctic Atlantic sector alone, there were at least Wve "species- level" clades. Some of these clades are geographically limited, and most exist in sympatry. The largest and most widespread of these clades was examined to help eluci- date connectivity along the subantarctic islands of the Scotia Arc and the Antarctic Peninsula. Within this clade, most genetic diversity was contained within populations, but signiWcant diVerences were present between regions (Antarctic Peninsula, South Sandwich Is., South Georgia, Bouvetoya Is.), suggesting a corresponding lack of gene Xow. Given that P. "kerguelensis" is a well-studied taxon, the Wnding of considerable genetic diversity within the Atlantic sector alone suggests that the recognized diver- sity of Antarctica's benthic marine life may be underesti- mated, and will rise dramatically with phylogeographic analyses of putative widespread species.

145 citations


Journal ArticleDOI
TL;DR: It is suggested that moderate environmental hypercapnia changes the metabolic profile in tissues of S. aurata and implications for slow processes like growth and reproduction potential as well as potential harm at population, species and ecosystem levels require further investigation.
Abstract: In the context of future scenarios of anthropogenic CO2 accumulation in marine surface waters, the present study addresses the effects of long-term hypercapnia on a Mediterranean fish, Sparus aurata. By equilibration with elevated CO2 levels seawater pH was lowered to a value of 7.3, close to the maximum pH drop expected in marine surface waters from atmospheric CO2 accumulation. Intra- and extracellular acid–base parameters as well as changes in enzyme profiles were studied in red and white muscles and the heart under both normocapnia and hypercapnia. The activities of pyruvate kinase (PK), lactate dehydrogenase (L-LDH), citrate synthase (CS), malate dehydrogenase and and 3-hydroxyacyl CoA dehydrogenase (HOAD) reflect the pathways and capacity of oxidative processes in metabolism. Long-term hypercapnia caused a transient reduction in blood plasma pH (pHe) as well as in intracellular pH (pHi). Compensation of the acidosis occurred through increased plasma and cellular bicarbonate levels. Changes in enzymatic activities, especially the increase in the activity of L-LDH, paralleled by a drop in CS activity in white and red muscles reflect a shift from aerobic to anaerobic pathways of substrate oxidation during long-term acclimation under hypercapnia. The present results suggest that moderate environmental hypercapnia changes the metabolic profile in tissues of S. aurata. Consequences for slow processes like growth and reproduction potential as well as potential harm at population, species and ecosystem levels require further investigation.

144 citations


Journal ArticleDOI
TL;DR: Analyses of linkage disequilibrium and kinship, as well as estimation of the effective number of parents, suggested that 10–20 adults produced this juvenile cohort, supporting the hypothesis of sweepstakes reproductive success and suggesting that partial inbreeding may occur even in species with large populations and dispersing planktonic larvae.
Abstract: The great fecundity and very high larval mortality of most marine invertebrates and fish make possible substantial variance in the number of offspring contributed by adults to subsequent generations. The reproductive success of such organisms may thus resemble a sweepstakes lottery, in which a minority of progenitors succeeds in replacing an entire population, while the majority fails to procreate. One specific prediction of this hypothesis, that genetic diversity of newly settled cohorts should be less than that of the adult population, is tested in the present study. Microsatellite DNA markers were examined in naturally spawned juvenile European flat oysters Ostrea edulis (L.), collected over a 12-day period in 1993 from the western Mediterranean Sea, near Sete, France (43°32′N, 3°56′E) and grown out for a period of up to 10 months. Variation in these juveniles was compared to that in a pooled sample of adults collected in 1994 from two locations (Thau Lagoon and Port St. Louis) that had statistically homogeneous allelic frequencies. Though nearly twice as large as the pooled adult sample, the juvenile sample had only 60% of the adult allelic diversity. Analyses of linkage disequilibrium and kinship, as well as estimation of the effective number of parents, suggested that 10–20 adults produced this juvenile cohort. This observation supports the hypothesis of sweepstakes reproductive success and suggests that partial inbreeding may occur even in species with large populations and dispersing planktonic larvae.

Journal ArticleDOI
TL;DR: It is suggested that the early developmental stages in the cnidarian life cycle, the planula larvae, and the polyps, play the key role in the development of jellyfish outbursts.
Abstract: The settlement behaviour of planula larvae and their development to young polyps was investigated in laboratory experiments in five scyphozoan species [Aurelia aurita (L.), Cyanea capillata (L.), Cyanea lamarckii Peron and Leseur, Chrysaora hysoscella (L.), and Rhizostoma octopus (L.)]. The undersides of settling plates were strongly preferred for settlement. Shells, the only natural substrate type offered, were less attractive than artificial substrates (concrete, machined wood, polyethylene, and glass). The advantages of colonization of substrate undersides for survival and reproduction of polyps are discussed. It is supposed that the increase of artificial substrates in our seas, due to marine litter pollution and submarine building activities, enlarge the areas of distribution of scyphozoan polyps, in coastal as well as in off-shore regions. Subsequent increases in ephyra production by polyps are probably one reason for the increase in mass occurrences of jellyfish recognized worldwide during the last few decades. It is suggested that the early developmental stages in the cnidarian life cycle, the planula larvae, and the polyps, play the key role in the development of jellyfish outbursts.

Journal ArticleDOI
TL;DR: It is hypothesized that tuna (at an individual or collective level) consider local conditions around any given FAD to be representative of the environment on a larger scale and when those conditions become unfavorable the tuna move to a completely different area.
Abstract: The influence of multiple anchored fish aggregating devices (FADs) on the spatial behavior of yellowfin (Thunnus albacares) and bigeye tuna (T. obesus) was investigated by equipping all thirteen FADs surrounding the island of Oahu (HI, USA) with automated sonic receivers (“listening stations”) and intra-peritoneally implanting individually coded acoustic transmitters in 45 yellowfin and 12 bigeye tuna. Thus, the FAD network became a multi-element passive observatory of the residence and movement characteristics of tuna within the array. Yellowfin tuna were detected within the FAD array for up to 150 days, while bigeye tuna were only observed up to a maximum of 10 days after tagging. Only eight yellowfin tuna (out of 45) and one bigeye tuna (out of 12) visited FADs other than their FAD of release. Those nine fish tended to visit nearest neighboring FADs and, in general, spent more time at their FAD of release than at the others. Fish visiting the same FAD several times or visiting other FADs tended to stay longer in the FAD network. A majority of tagged fish exhibited some synchronicity when departing the FADs but not all tagged fish departed a FAD at the same time: small groups of tagged fish left together while others remained. We hypothesize that tuna (at an individual or collective level) consider local conditions around any given FAD to be representative of the environment on a larger scale (e.g., the entire island) and when those conditions become unfavorable the tuna move to a completely different area. Thus, while the anchored FADs surrounding the island of Oahu might concentrate fish and make them more vulnerable to fishing, at a meso-scale they might not entrain fish longer than if there were no (or very few) FADs in the area. At the existing FAD density, the ‘island effect’ is more likely to be responsible for the general presence of fish around the island than the FADs. We recommend further investigation of this hypothesis.

Journal ArticleDOI
TL;DR: In this paper, the shape analysis of the common sole, Solea solea (Linnaeus, 1758), was carried out on otoliths of the fish in order to discriminate local populations in the North-Western Mediterranean Sea.
Abstract: Shape analyses were carried out on otoliths of the common sole, Solea solea (Linnaeus, 1758), in order to discriminate local populations in the North-Western Mediterranean Sea. Samples were collected in various environments like coastal lagoons, the outlet of the Rhone River as well as other marine sites. Morphological analyses highlighted a significant asymmetry between the left and right otoliths. This character could be acquired during or shortly after settlement on soft-bottoms when the individuals really become flatfishes. The otolith shape was described by seven harmonics from elliptic Fourier descriptors and by five indices of shape (coefficient of form, roundness, circularity, rectangularity, and ellipticity). The existence of several local populations of common sole in the NW Mediterranean was demonstrated. In particular, discriminant analyses highlighted significant differences in otolith shape according both to fish size and to the types of environment in which the fish live, i.e. coastal lagoons vs. marine sites, but also between sites belonging to the same type (lagoons, and marine sites). The differences in shape could be linked (1) to the particular environmental conditions of each site, and (2) to changes in metabolic and/or physiological conditions according to the stage of development of the fish which most likely influences the otolith growth.

Journal ArticleDOI
TL;DR: The latitudinal effect by differences in nitrogen dynamics existing at the base of the food web and propagating along the food chain up to top predators is explained and suggests that yellowfin and swordfish populations exhibit a relatively unexpected resident behaviour at the temporal scale of their muscle tissue turnover.
Abstract: Ecologists primarily use δ15N values to estimate the trophic level of organisms, while δ13C, and even recently δ15N, are utilized to delineate feeding habitats. However, many factors can influence the stable isotopic composition of consumers, e.g. age, starvation or isotopic signature of primary producers. Such sources of variability make the interpretation of stable isotope data rather complex. To examine these potential sources of variability, muscle tissues of yellowfin tuna (Thunnus albacares) and swordfish (Xiphias gladius) of various body lengths were sampled between 2001 and 2004 in the western Indian Ocean during different seasons and along a latitudinal gradient (23°S to 5°N). Body length and latitude effects on δ15N and δ13C were investigated using linear models. Both latitude and body length significantly affect the stable isotope values of the studied species but variations were much more pronounced for δ15N. We explain the latitudinal effect by differences in nitrogen dynamics existing at the base of the food web and propagating along the food chain up to top predators. This spatial pattern suggests that yellowfin and swordfish populations exhibit a relatively unexpected resident behaviour at the temporal scale of their muscle tissue turnover. The body length effect is significant for both species but this effect is more pronounced in swordfish as a consequence of their different feeding strategies, reflecting specific physiological abilities. Swordfish adults are able to reach very deep water and have access to a larger size range of prey than yellowfin tuna. In contrast, yellowfin juveniles and adults spend most of their time in the surface waters and large yellowfin tuna continue to prey on small organisms. Consequently, nitrogen isotopic signatures of swordfish tissues are higher than those of yellowfin tuna and provide evidence for different trophic levels between these species. Thus, in contrast to δ13C, δ15N analyses of tropical Indian Ocean marine predators allow the investigation of complex vertical and spatial segregation, both within and between species, even in the case of highly opportunistic feeding behaviours. The linear models developed in this study allow us to make predictions of δ15N values and to correct for any body length or latitude differences in future food web studies.

Journal ArticleDOI
TL;DR: The variation in composition and distribution of blubber lipids in odontocetes suggests that different species may have evolved slightly diverse arrays of secondary functions for this specialized adipose tissue as adaptations for specific ecological niches.
Abstract: To explore ecological, phylogenetic, and developmental factors affecting the structure of blubber in Odontocetes (toothed whales), lipid composition of this specialized adipose tissue was determined in 260 specimens (30 species representing all families except the river dolphins), most of which were collected between 1995 and 2005, from all over the world. In most odontocetes, blubber contained primarily triacylglycerols; the blubber of beaked and sperm whales was dominated by wax esters (WE), exhibiting ontogenetic patterns of deposition. WEs may represent an adaptation to deep diving for marine mammals that do not rely on blubber for stored energy. Fatty acid (FA) composition was stratified through blubber depth, with higher concentrations of dietary FA in the inner and endogenous FA in the outer layers of the blubber. Stratification can be considered a characteristic feature of odontocetes, and is likely the result of differential metabolism through the blubber. Small body size appears to constrain blubber lipid content to be high. Thermal habitat also represents an important selective pressure for blubber composition. Species inhabiting colder waters exhibited both higher lipid content and increased FA stratification in blubber, compared to species from warm/tropical habitats. The isolation of mobilization to inner blubber may permit metabolic enzymes to function without limitation by lower temperatures. The variation in composition and distribution of blubber lipids in odontocetes suggests that different species may have evolved slightly diverse arrays of secondary functions for this specialized tissue as adaptations for specific ecological niches.

Journal ArticleDOI
TL;DR: This study demonstrates that the removal of abundant targeted species from an ecosystem by fishing can indirectly impact non-fished species and alter the trophic structure of fish assemblages.
Abstract: Closure of areas to fishing is expected to result in an increase in the abundance of targeted species; however, changes to populations of species not targeted by fishermen will depend upon their role in the ecosystem and their relationship with targeted species. The effects of protection on targeted and non-targeted reef fish species at the Houtman Abrolhos Islands, Western Australia were studied using baited remote underwater stereo–video cameras. Video images were collected from shallow (8–12 m) and deep (22–26 m) reef sites inside a Marine Protected Area (MPA) at each of three island groups and from three replicate fished locations at each of these groups that span a temperate-tropical transition area. The MPAs were established in 1994 and vary in size from 13.72 km2 at the Pelsaert group in the south to 22.29 km2 at the Easter group to 27.44 km2 at the Wallabi group in the north. The relative abundances of 137 fish species from 42 families were recorded. Large differences in fish assemblage structure existed between MPA and fished locations, and also between shallow and deep regions. Targeted fish species Plectropomus leopardus, Lethrinus miniatus, Lethrinus nebulosus, Pagrus auratus and Glaucosoma hebraicum were more abundant inside MPAs than in areas open to fishing. Their abundance inside MPAs was between 1.13 and 8 times greater than their abundance at fished locations. For non-targeted fish species many were more abundant in areas open to fishing, e.g. Coris auricularis, Thalassoma lutescens, Thalassoma lunare, Dascyllus trimaculatus, however others were conversely more abundant inside MPAs, e.g. Gymnothorax spp, Kyphosus sydneyanus, Scarus microhinos, Chromis westaustralis, Chaetodon spp. This study demonstrates that the removal of abundant targeted species from an ecosystem by fishing can indirectly impact non-fished species and alter the trophic structure of fish assemblages.

Journal ArticleDOI
TL;DR: Two different effects of elevated temperature on the early stages of recruitment process of scleractinian corals are suggested; (1) the positive effect on larval settlement and (2) the negative effect on post-settlement survival under prolonged exposure.
Abstract: We examined the effects of elevated temperature under different exposure periods on larval settlement and post-settlement survival in scleractinian corals, Acropora solitaryensis and Favites chinensis. In the first experiment with the subtropical coral, A. solitaryensis, the numbers of larvae settling and those dead were examined daily for 5 days at 20, 23 (ambient), 26 and 29°C conditions. Larval settlement of A. solitaryensis was initially greater at higher temperature conditions, but the peak in number of settled larvae shifted from 29 to 26°C by day 5, due to ca. 90% post-settlement mortality at 29°C condition. In order to determine the effects under short-term exposure, larvae of F. chinensis were exposed to 27 (ambient), 31 or 34°C only for one hour in the second experiment. The number of larvae settling for 24 h after the exposure and their survivorship over subsequent week was monitored in the ambient temperature condition. Larvae of F. chinensis exhibited greater settlement at higher temperature treatments and constantly low post-settlement mortalities (< ca. 17%) in all temperature treatments, resulting in the highest number of settled larvae at 34°C treatment. These results suggested two different effects of elevated temperature on the early stages of recruitment process of scleractinian corals; (1) the positive effect on larval settlement and (2) the negative effect on post-settlement survival under prolonged exposure.

Journal ArticleDOI
TL;DR: Results from this study indicate that the impact of elevated temperature on BBD progression is complex with a combination of environmental factors including temperature and light playing key roles in progression and transmission of the disease.
Abstract: Rates of progression and transmission of black band disease (BBD) on the staghorn coral, Acropora muricata, were compared between months for seasonal in situ studies and between temperature treatments in experimental aquaria manipulations at Lizard Island on the Great Barrier Reef (GBR). In situ field experiments demonstrated that BBD progressed along branches approximately twice as fast (1.7–2.4 times) during the austral summer month of January (0.99 ± 0.04 cm/day) than in the cooler months of July (0.58 ± 0.04 cm/day) and May (0.41 ± 0.07 cm/day). Transmission of BBD between colonies was also accelerated in warmer months, with signs of infection becoming visible 1.2 days earlier in January compared to May. The greater seawater temperatures by ∼2 to 3°C and light intensities by up to 650 μE/m2/s in January, suggest that rates of progression and transmission of BBD are linked to one or both of these parameters. Manipulative experiments in summer provide corroborative evidence that elevated temperatures increase rates of BBD progression, with the disease progressing 1.3 times more rapidly in the 32°C elevated temperature treatment than in the 30°C ambient treatment (1.17 ± 0.06 cm/day versus 0.92 ± 0.07 cm/day; F2,6 = 7.66, P = 0.022). In contrast, although a trend for greatest BBD progression was measured in elevated temperature treatments of 29°C (0.46 ± 0.07 cm/day) and 31°C (0.52 ± 0.06 cm/day) in winter, these rates did not differ significantly (F3,7 = 1.72, P = 0.249) from those measured for the ambient 27°C treatment (0.37 ± 0.06 cm/day) or the field controls (0.41 ± 0.09 cm/day). The lower rates of BBD progression in the 31°C winter treatment (0.52 ± 0.06 cm/day) than in the 30°C (0.92 ± 0.07 cm/day) summer treatment, may have been a response to 28-fold decreased light irradiance in the former, suggesting that high irradiance in combination with elevated temperatures may promote progression of BBD. Results from this study indicate that the impact of elevated temperature on BBD progression is complex with a combination of environmental factors including temperature and light playing key roles in progression and transmission of the disease.

Journal ArticleDOI
TL;DR: This movement and previously documented trans-Atlantic movements suggest that tiger shark populations may mix across ocean basins and that tiger sharks are subject to anthropogenic effects at great distances from protected waters.
Abstract: Tiger sharks are important predators in the seagrass ecosystem of Shark Bay, Australia. Although sharks appear to return to a long-term study site within the Eastern Gulf periodically, the extent of their long-term movements is not known. Five sharks fitted with satellite transmitters showed variable movement patterns. Three sharks remained within the Shark Bay region and another made a 500 km round-trip excursion to oceanic waters northwest of the bay. These four sharks showed relatively low displacement rates relative to sharks tracked over shorter time periods, suggesting that sharks move through large home ranges that include Shark Bay. Although no reliable position fixes were obtained for the fifth shark, we were able to use the timing of satellite uplinks and the position of the satellite to determine that it had moved at least 8,000 km to the coastal waters of southeast Africa in 99 days—the longest recorded movement by a tiger shark. This movement and previously documented trans-Atlantic movements suggest that tiger shark populations may mix across ocean basins and that tiger sharks are subject to anthropogenic effects at great distances from protected waters. Finally, our method for using single satellite uplinks may be useful in estimating movements for wide-ranging species that rarely provide high quality location estimates.

Journal ArticleDOI
TL;DR: The persistence of high P. marinus infection levels in the new range after the initial expansion is probably due to several factors, including winter temperatures continued to increase during the 1990s and early 2000s, albeit at a slower rate than in 1990–1991, facilitating overwinter survival of the parasite.
Abstract: Over a 2-year period in 1990 and 1991, coincident with a pronounced warming episode, Dermo disease outbreaks in the oyster, Crassostrea virginica, caused by the parasite Perkinsus marinus, occurred over a 500-km range from Delaware Bay to Cape Cod, in the northeastern United States. The parasite had not previously been recorded or known to cause mortalities in this region. To document infection patterns and levels in this region several years after the initial outbreaks, and to compare them with those in the parasite’s historic southern range, we deployed and sampled oysters from 1996 to 1998 at multiple sites spanning the expanded range. During this 2-year period, the parasite was documented to occur in oysters at high prevalences throughout the new range, in sites varying from small, enclosed embayments to large estuaries, and in both cultured and wild-set oysters. Infection and mortality patterns, and levels were similar to those in southern locations where the parasite has been enzootic for at least decades. The persistence of high P. marinus infection levels in the new range after the initial expansion is probably due to several factors: (1) winter temperatures continued to increase during the 1990s and early 2000s, albeit at a slower rate than in 1990–1991, facilitating overwinter survival of the parasite; (2) many oyster-growing sites in the northeast are in relatively shallow water in which summer temperatures offer ample time for the parasite to proliferate and spread; and (3) the combination of high parasite burdens and high host densities in oyster farms results in an abundance of parasites and high transmission rates. Colder winters and high rainfall after 2002 reduced prevalences in some regions, but P. marinus can survive low temperatures and low salinities, and epizootic conditions are likely to return if temperatures rise again, as predicted by climate-change models.

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TL;DR: Breeding areas used by the bluefin tuna were significantly associated with bathymetry, SST, eddy kinetic energy, surface chlorophyll concentration, and surface wind speed, with SST being the most important parameter, which can be used to develop habitat models and estimate the probable breeding areas of bluefish in a dynamic environment.
Abstract: Electronic tagging and remotely sensed oceanographic data were used to determine the oceanographic habitat use and preferences of Atlantic bluefin tuna (Thunnus thynnus L.) exhibiting behaviors associated with breeding in the Gulf of Mexico (GOM). Oceanographic habitats used by 28 Atlantic bluefin tuna exhibiting breeding behavior (259 days) were compared with available habitats in the GOM, using Monte Carlo tests and discrete choice models. Habitat utilization and preference patterns for ten environmental parameters were quantified: bathymetry, bathymetric gradient, SST, SST gradient, surface chlorophyll concentration, surface chlorophyll gradient, sea surface height anomaly, eddy kinetic energy, surface wind speed, and surface current speed. Atlantic bluefin tuna exhibited breeding behavior in the western GOM and the frontal zone of the Loop Current. Breeding areas used by the bluefin tuna were significantly associated with bathymetry, SST, eddy kinetic energy, surface chlorophyll concentration, and surface wind speed, with SST being the most important parameter. The bluefin tuna exhibited significant preference for areas with continental slope waters (2,800–3,400 m), moderate SSTs (24–25 and 26–27°C), moderate eddy kinetic energy (251–355 cm2 s−2), low surface chlorophyll concentrations (0.10–0.16 mg m−3), and moderate wind speeds (6–7 and 9–9.5 m s−1). A resource selection function of the bluefin tuna in the GOM was estimated using a discrete choice model and was found to be highly sensitive to SST. These habitat utilization and preference patterns exhibited by breeding bluefin tuna can be used to develop habitat models and estimate the probable breeding areas of bluefin tuna in a dynamic environment.

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TL;DR: The amount of genetic structure within marine biogeographic regions strongly depends on the presence or absence of free-swimming larvae, and whether or not they are capable of active dispersal seems to have little effect on connectivity among populations.
Abstract: The amount of genetic structure in marine invertebrates is often thought to be negatively correlated with larval duration. However, larval retention may increase genetic structure in species with long-lived planktonic larvae, and rafting provides a means of dispersal for species that lack a larval dispersal phase. We compared genetic structure, demographic histories and levels of gene flow of regional lineages (in most cases defined by biogeographic region) of five southern African coastal invertebrates with three main types of larval development: (1) dispersal by long-lived planktonic larvae (mudprawn Upogebia africana and brown mussel Perna perna), (2) abbreviated larval development (crown crab Hymenosoma orbiculare) and (3) direct development (estuarine isopod Exosphaeroma hylecoetes and estuarine cumacean Iphinoe truncata). We hypothesized that H. orbiculare, having abbreviated larval development, would employ a strategy of larval retention, resulting in genetic structure comparable to that of the direct developers rather than the planktonic dispersers. However, regional population structure was significantly lower in all species with planktonic larvae, including H. orbiculare, than in the direct developers. Moreover, nested clade analysis identified demographic histories resulting from low levels of gene flow (isolation by distance and allopatric fragmentation) in the direct developers only, and migration rates were significantly higher in all three species having planktonic larvae than in the direct developers. We conclude that the amount of genetic structure within marine biogeographic regions strongly depends on the presence or absence of free-swimming larvae. Whether such larvae are primarily exported or retained, whether they have long or short larval duration, and whether or not they are capable of active dispersal seems to have little effect on connectivity among populations.

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TL;DR: In the light of the present results, hull fouling on standard trading commercial vessels does not seem to pose a significant risk for new macroalgal species introductions, however, a high proportion of non-cosmopolitan species found on a ship with non-toxic coating may modify this assessment.
Abstract: Hull fouling is thought to have been the vector of introduction for many algal species. We studied ships arriving at a Mediterranean harbour to clarify the present role of commercial cargo shipping in algal introductions. A total of 31 macroalgal taxa were identified from 22 sampled hulls. The majority of records (58%) were of species with a known cosmopolitan geographical distribution. Due to a prevalence of cosmopolitan species and a high turnover of fouling communities, species composition of assemblages did not appear to be influenced by the area of origin, length of ship or age of coating. In the light of the present results, hull fouling on standard trading commercial vessels does not seem to pose a significant risk for new macroalgal species introductions. However, a high proportion of non-cosmopolitan species found on a ship with non-toxic coating may modify this assessment, especially in the light of the increasing use of such coatings and the potential future changes in shipping routes.

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TL;DR: In this article, the authors used a new method to assess potential for intra-regional spread of a marine crab introduced to North America, Carcinus maenas, using nearshore sea-surface temperature data from both coasts of North America to predict development times required for larvae at different months and sites.
Abstract: Introduced populations can cause ecologi- cal and economic damage and are diYcult to eradicate once they have established. It is therefore important to be able to predict both where species may become established and their capacity to spread within recipi- ent regions. Here, we use a new method to assess potential for intraregional spread of a marine crab introduced to North America, Carcinus maenas. We determined survivorship and development rates throughout a range of temperatures in the laboratory for C. maenas larvae from non-native populations on the Atlantic and PaciWc coasts of North America. The larvae exhibited narrower physiological tolerances than adults, and no lab-cultured larvae completed lar- val development below 10.0°C or above 22.5°C. Survi- vorship peaked at intermediate water temperatures of 12.5-20.0°C, and development time decreased with increasing temperatures within this range. Based upon these laboratory development rates, we used nearshore sea-surface temperature data from both coasts of North America to predict development times required for larvae at diVerent months and sites. Taken together, survivorship and development data indicate that C. maenas has the capacity to continue its north- ward spread and establish populations at numerous additional sites in North America. Moreover, decadal temperature data at two Alaskan sites predicted little variability in development duration across years, sug- gesting that development duration predictions are robust to interannual water temperature diVerences.

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TL;DR: The results indicate that organic matrix proteins, which are synthesized by the calcifying tissues, are not only structural proteins, but they also play a crucial catalytic role by eliminating the kinetic barrier to interconversion of inorganic carbon at the calcification site.
Abstract: In zooxanthellate corals, the photosynthetic fixation of carbon dioxide and the precipitation of CaCO_3 are intimately linked both spatially and temporally making it difficult to study carbon transport mechanisms involved in each pathway. When studying Tubastrea aurea, a coral devoid of zooxanthellae, we can focus on carbon transport mechanisms involved only in the calcification process. We performed this study to characterize T. aurea carbonic anhydrase and to determine its role in the calcification process. We have shown that inhibition of tissular carbonic anhydrase activity affects the calcification rate. We have measured the activity of this enzyme both in the tissues and in the organix matrix extracted from the skeleton. Our results indicate that organic matrix proteins, which are synthesized by the calcifying tissues, are not only structural proteins, but they also play a crucial catalytic role by eliminating the kinetic barrier to interconversion of inorganic carbon at the calcification site. By immunochemistry we have demonstrated the presence of a protein both in the tissues and in the organic matrix, which shares common features with prokaryotic carbonic anhydrases.

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TL;DR: A population genetic survey in the marine nematode Geomonhystera disjuncta in Belgium and The Netherlands in two seasons shows a significant structuring in all lineages and temporal fluctuations in haplotype frequencies within and between locations, and indicates that the COI gene may be useful for DNA barcoding purposes.
Abstract: Species identification in the phylum Nematoda is complicated due to the paucity of easily obtainable diagnostic morphological features. Furthermore, the cosmopolitan distribution of several species despite low dispersal abilities makes cryptic diversity potentially substantial within this phylum. We conducted a population genetic survey in the marine nematode Geomonhystera disjuncta in Belgium and The Netherlands in two seasons. The mitochondrial cytochrome oxidase c subunit 1 (COI) gene was screened with the single-strand conformation polymorphism method in 759 individuals. The 43 haplotypes were grouped into five lineages, with low divergences within ( 14%). Analysis of the nuclear ITS region yielded concordant tree topologies, indicating the presence of five cryptic taxa within G. disjuncta. Analysis of Molecular Variance (AMOVA) illustrated a significant structuring in all lineages and temporal fluctuations in haplotype frequencies within and between locations. Metapopulation dynamics and/or priority effects best explained this structuring. Finally, our data indicate that the COI gene may be useful for DNA barcoding purposes.

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TL;DR: The results significantly expand the knowledge of the bacterial diversity of the unique mangrove environment and reveal a diversity of sequences that were mostly novel.
Abstract: Bacteria in the surface sediments of a subtropical mangrove habitat were investigated using a cultivation-independent molecular approach. Phylogenetic analysis of nearly full-length 16S rRNA genes revealed a diversity of sequences that were mostly novel. Members from the five subdivisions of the Proteobacteria were detected, and they collectively represented the majority (67%) of the clone library. Sequence types affiliated with the Gammaproteobacteria constituted the largest portion (29%) of the library, and many of them were related to free-living and symbiotic sulfur-oxidizing bacteria. The Epsilonproteobacteria were the second most abundant group (16%), including only one sequence type clustering with PCR-generated bacterial clones previously recovered from deep-sea sediments. A substantial portion (8%) of the clones grouped within the Deltaproteobacteria, a subdivision with anaerobic sulfate or metal reduction as the predominant metabolic trait of its members. In addition, minor portions were affiliated with the Cytophaga–Flexibacter–Bacteroides group (9%), Actinobacteria (6%), Chloroflexi (5%), Firmicutes (4%), Fusobacteria (1%), and the Chlamydiae/Verrucomicrobia group, Fibrobacteres/Acidobacteria group and Planctomycetes (each < 1%). These results significantly expand our knowledge of the bacterial diversity of the unique mangrove environment.

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TL;DR: This study provides the first evidence of intrinsic or PCD as a primary mechanism of cell death in WS, and may provide some explanation for the failure to isolate pathogens from over 80% of identified coral diseases, many of which show similar lesion patterns and WS characteristics.
Abstract: White syndromes (WS) are among the most prevalent coral diseases, and are responsible for reef demise on the Great Barrier Reef The disease manifests as a clear differentiation between tissue and exposed skeleton and results in rapid tissue loss Fluorescence in situ hybridisation (FISH) was used in conjunction with histology and transmission electron microscopy (TEM) to investigate bacterial communities and cell death associated with WS No evidence of bacterial communities or microbial association (using six bacterial probes, TEM and histopathology) was evident within the lesion or adjacent tissues, despite the presence of dense possible secondary invaders in the exposed skeletal regions Despite widespread reference to necrosis in coral disease literature, there was no evidence of necrosis in any WS lesion or the adjacent tissues in this study However, in situ end labelling, light microscopy and TEM of WS and healthy coral tissue sections showed evidence of extensive programmed cell death (PCD) exclusively in WS This study provides the first evidence of intrinsic or PCD as a primary mechanism of cell death in WS, and may provide some explanation for the failure to isolate pathogens from over 80% of identified coral diseases, many of which show similar lesion patterns and WS characteristics

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TL;DR: Evidence is provided that bonnetheads continuously exposed to warmer temperatures have elevated metabolism and require additional energy consumption to maintain growth and reproduction.
Abstract: To examine variation in diet and daily ration of the bonnethead shark, Sphyrna tiburo (Linnaeus 1758), animals were collected from three areas in the eastern Gulf of Mexico: northwest Florida (∼29°40′N, 85°13′W), Tampa Bay near Anclote Key (∼28°10′N, 82°42.5′W), and Florida Bay (∼24°50′N, 80°48′W) from March through September, 1998–2000. In each area, diet was assessed by life stage (young-of-the year, juveniles, and adults) and quantified using five indices: percent by number (%N), percent by weight (%W), frequency of occurrence (%O), index of relative importance expressed on a percent basis (%IRI), and %IRI based on diet category (%IRIDC). Diet could not be assessed for young-of-the-year in Tampa Bay or Florida Bay owing to low sample size. Diet analysis showed an ontogenetic shift in northwest Florida. Young-of-the-year stomachs from northwest Florida (n = 68, 1 empty) contained a mix of seagrass and crustaceans while juvenile stomachs (n = 82, 0 empty) contained a mix of crabs and seagrass and adult stomachs (n = 39, 1 empty) contained almost exclusively crabs. Crabs made up the majority of both juvenile and adult diet in Tampa Bay (n = 79, 2 empty, and n = 88, 1 empty, respectively). Juvenile stomachs from Florida Bay (n = 72, 0 empty) contained seagrass and a mix of crustaceans while adult stomachs contained more shrimp and cephalopods (n = 82, 3 empty). Diets in northwest Florida and Tampa Bay were similar. The diet in Florida Bay was different from those in the other two areas, consisting of fewer crabs and more cephalopods and lobsters. Plant material was found in large quantities in all stomachs examined from all locations (>15 %IRIDC in 6 of the 7 life stage-area combinations, >30 %IRIDC in 4 of the 7 combinations, and 62 %IRIDC in young-of-the-year diet in northwest Florida). Using species- and area-specific inputs, a bioenergetic model was constructed to estimate daily ration. Models were constructed under two scenarios: assuming plant material was and was not part of the diet. Overall, daily ration was significantly different by sex, life stage, and region. The bioenergetic model predicted increasing daily ration with decreasing latitude and decreasing daily ration with ontogeny regardless of the inclusion or exclusion of plant material. These results provide evidence that bonnetheads continuously exposed to warmer temperatures have elevated metabolism and require additional energy consumption to maintain growth and reproduction.