Showing papers in "PhytoKeys in 2017"
TL;DR: Deep branches in the combined plastid and combined ITS+ETS trees are generally well resolved, the trees are congruent in most aspects, branch support across the trees is stronger than in trees based on only ITS and fewer plastID regions, and there is evidence of conflict between data partitions in some taxa.
Abstract: Circumscriptions of and relationships among many genera and suprageneric taxa of the diverse grass tribe Poeae remain controversial. In an attempt to clarify these, we conducted phylogenetic analyses of >2400 new DNA sequences from two nuclear ribosomal regions (ITS, including internal transcribed spacers 1 and 2 and the 5.8S gene, and the 3'-end of the external transcribed spacer (ETS)) and five plastid regions (matK, trnL-trnF, atpF-atpH, psbK-psbI, psbA-rps19-trnH), and of more than 1000 new and previously published ITS sequences, focused particularly on Poeae chloroplast group 1 and including broad and increased species sampling compared to previous studies. Deep branches in the combined plastid and combined ITS+ETS trees are generally well resolved, the trees are congruent in most aspects, branch support across the trees is stronger than in trees based on only ITS and fewer plastid regions, and there is evidence of conflict between data partitions in some taxa. In plastid trees, a strongly supported clade corresponds to Poeae chloroplast group 1 and includes Agrostidinae p.p., Anthoxanthinae, Aveninae s.str., Brizinae, Koeleriinae (sometimes included in Aveninae s.l.), Phalaridinae and Torreyochloinae. In the ITS+ETS tree, a supported clade includes these same tribes as well as Sesleriinae and Scolochloinae. Aveninae s.str. and Sesleriinae are sister taxa and form a clade with Koeleriinae in the ITS+ETS tree whereas Aveninae s.str. and Koeleriinae form a clade and Sesleriinae is part of Poeae chloroplast group 2 in the plastid tree. All species of Trisetum are part of Koeleriinae, but the genus is polyphyletic. Koeleriinae is divided into two major subclades: one comprises Avellinia, Gaudinia, Koeleria, Rostraria, Trisetaria and Trisetum subg. Trisetum, and the other Calamagrostis/Deyeuxia p.p. (multiple species from Mexico to South America), Peyritschia, Leptophyllochloa, Sphenopholis, Trisetopsis and Trisetum subg. Deschampsioidea. Graphephorum, Trisetum cernuum, T. irazuense and T. macbridei fall in different clades of Koeleriinae in plastid vs. nuclear ribosomal trees, and are likely of hybrid origin. ITS and matK trees identify a third lineage of Koeleriinae corresponding to Trisetum subsect. Sibirica, and affinities of Lagurus ovatus with respect to Aveninae s.str. and Koeleriinae are incongruent in nuclear ribosomal and plastid trees, supporting recognition of Lagurus in its own subtribe. A large clade comprises taxa of Agrostidinae, Brizinae and Calothecinae, but neither Agrostidinae nor Calothecinae are monophyletic as currently circumscribed and affinities of Brizinae differ in plastid and nuclear ribosomal trees. Within this clade, one newly identified lineage comprises Calamagrostis coarctata, Dichelachne, Echinopogon (Agrostidinae p.p.) and Relchela (Calothecinae p.p.), and another comprises Chascolytrum (Calothecinae p.p.) and Deyeuxia effusa (Agrostidinae p.p.). Within Agrostidinae p.p., the type species of Deyeuxia and Calamagrostis s.str. are closely related, supporting classification of Deyeuxia as a synonym of Calamagrostis s.str. Furthermore, the two species of Ammophila are not sister taxa and are nested among different groups of Calamagrostis s.str., supporting their classification in Calamagrostis. Agrostis, Lachnagrostis and Polypogon form a clade and species of each are variously intermixed in plastid and nuclear ribosomal trees. Additionally, all but one species from South America classified in Deyeuxia sect. Stylagrostis resolve in Holcinae p.p. (Deschampsia). The current phylogenetic results support recognition of the latter species in Deschampsia, and we also demonstrate Scribneria is part of this clade. Moreover, Holcinae is not monophyletic in its current circumscription because Deschampsia does not form a clade with Holcus and Vahlodea, which are sister taxa. The results support recognition of Deschampsia in its own subtribe Aristaveninae. Substantial further changes to the classification of these grasses will be needed to produce generic circumscriptions consistent with phylogenetic evidence. The following 15 new combinations are made: Calamagrostis × calammophila, C. breviligulata, C. breviligulata subsp. champlainensis, C. × don-hensonii, Deschampsia aurea, D. bolanderi, D. chrysantha, D. chrysantha var. phalaroides, D. eminens, D. eminens var. fulva, D. eminens var. inclusa, D. hackelii, D. ovata, and D. ovata var. nivalis. D. podophora; the new name Deschampsia parodiana is proposed; the new subtribe Lagurinae is described; and a second-step lectotype is designated for the name Deyeuxia phalaroides.
53 citations
TL;DR: The taxonomic history, morphology, relationships and ecology of these species are reviewed and keys for their identification, descriptions, full synonymy (including designations of lectotypes) and nomenclatural notes are provided.
Abstract: The Solanum elaeagnifolium clade (Elaeagnifolium clade) contains five species of small, often rhizomatous, shrubs from deserts and dry forests in North and South America. Members of the clade were previously classified in sections Leprophora, Nycterium and Lathyrocarpum, and were not thought to be closely related. The group is sister to the species-rich monophyletic Old World clade of spiny solanums. The species of the group have an amphitropical distribution, with three species in Mexico and the southwestern United States and three species in Argentina. Solanum elaeagnifolium occurs in both North and South America, and is a noxious invasive weed in dry areas worldwide. Members of the group are highly variable morphologically, and this variability has led to much synonymy, particularly in the widespread S. elaeagnifolium. We here review the taxonomic history, morphology, relationships and ecology of these species and provide keys for their identification, descriptions, full synonymy (including designations of lectotypes) and nomenclatural notes. Illustrations, distribution maps and preliminary conservation assessments are provided for all species.
46 citations
TL;DR: Two of the seven plant distribution regions of Kenya, K4 and K7 are the most species-richest areas with regard to both total and endemic species, with 3375 and 3191 total species and 174 and 185 endemic species in K3 and K5 respectively.
Abstract: Kenya, an African country with major higher plant diversity, has a corresponding diversity of plant associations, because of the wide geographic distribution, diverse climatic conditions and soil types. In this article, all vascular plants of Kenya were counted based on the completed "Flora of Tropical East Africa (FTEA)", and all families and genera were revised using recent molecular systematics research, forming a "Synoptic List of Families and Genera of Kenyan Vascular Plants (SLFGKVP)". In total, there are 225 families, 1538 genera and 6293 indigenous species and and 62 families, 302 genera and 588 exotic species in Kenya. The Fabaceae with 98 genera and 576 Species is the largest family. Two of the seven plant distribution regions of Kenya, K4 and K7 are the most species-richest areas with regard to both total and endemic species, with 3375 and 3191 total species and 174 and 185 endemic species in K4 and K7 respectively. While, K3 and K5 have the highest density of both total and endemic species. K1 has the lowest density of total species, and K2 has the lowest density of endemic species.
22 citations
TL;DR: A revision of Glebionis coronaria in the Mediterranean area is presented based on micro-morphology of the disc floret cypselas observed with a high-resolution confocal microscopy and morphological and ecological characteristics such as the disposition of the intercostal glands, the size of the discs wings and its distribution according to the bioclimatic belts.
Abstract: We present a revision of Glebionis coronaria in the Mediterranean area based on: a) micro-morphology of the disc floret cypselas observed with a high-resolution confocal microscopy; b) measurements of the disc cypsela with a stereoscopic microscope - duly scaled; c) its distribution in several bioclimatic belts; d) field observations; e) comparisons of herbarium samples. Because of this study, we propose the elevation of Glebionis coronaria var. discolor to the rank of species, as Glebionis discolorcomb. & stat. nov., based on morphological and ecological characteristics such as the disposition of the intercostal glands, the size of the disc cypsela wings and its distribution according to the bioclimatic belts. Glebionis coronaria, with totally yellow ray florets and intercostal glands aligned, is exclusive to the thermo-Mediterranean bioclimatic belt, while Glebionis discolor, with white ray florets on a yellow base and intercostal glands arranged randomly, is found in the thermo- and meso-Mediterranean belt. Illustrations of micromorphological characteristics of the cypselas, an identification key, a taxonomic synopsis including information on nomenclatural types, synonyms, descriptions of the taxa, and, as supplementary information, a list of the specimens examined and bioclimatic classification of samples localities are also presented.
20 citations
TL;DR: The first morphology-based evolutionary hypothesis for Tradescantia is presented, based on the total evidence of the present morphological phylogeny, in accordance to the previously published molecular data.
Abstract: Throughout the years, three infrageneric classifications were proposed for Tradescantia along with several informal groups and species complexes. The current infrageneric classification accepts 12 sections - with T. sect. Tradescantia being further divided into four series - and assimilates many concepts adopted by previous authors. Recent molecular-based phylogenetic studies indicate that the currently accepted sections might not represent monophyletic groups within Tradescantia. Based on newly gathered morphological data on the group, complemented with available micromorphological, cytological and phytochemical data, I present the first morphology-based evolutionary hypothesis for Tradescantia. Furthermore, I reduce subtribe Thyrsantheminae to a synonym of subtribe Tradescantiinae, and propose a new infrageneric classification for Tradescantia, based on the total evidence of the present morphological phylogeny, in accordance to the previously published molecular data.
17 citations
TL;DR: It was revealed that specific conductivity and pH were the main environmental factors driving the community composition observed, and two new species are described as new species, namely Brachysira altepetlensis and Sellaphora queretana.
Abstract: The Lerma-Chapala Basin, in Central Mexico, is geologically heterogeneous, climatically diverse and boasts high biodiversity, lying within two Biodiversity Hotspots, namely Mesoamerica and the Madrean Pine-Oak Woodlands. Epilithon and water samples were collected in the basin from 14 sampling sites three times each, two sampling campaigns during the rainy season and one in the dry season. A total of 274 infrageneric taxa in 48 genera were recorded. The taxonomic composition observed was dominated by taxa from the genera Nitzschia, Gomphonema, Pinnularia, Navicula, Sellaphora and Eunotia. About a third of the taxa found could not be identified to the species level. From those unidentified morphodemes, two are described as new species, namely Brachysira altepetlensis and Sellaphora queretana. Furthermore, Eolimna rhombica is transferred to Sellaphora. Canonical Correspondence Analysis (CCA) revealed that specific conductivity and pH were the main environmental factors driving the community composition observed. Three groups of samples were identified after the CCA: 1) characterized by acidic waters and low conductivity; 2) with circumneutral waters, low specific conductivity and high temperature and phosphorous concentrations; and 3) characterized by circumneutral waters, high conductivity and low nitrogen concentrations. The indicator value method (IndVal), based on the relative abundance and relative frequency of the most abundant taxa was calculated based on the groups observed in the CCA, identifying the characteristic taxa for each of the three groups.
17 citations
TL;DR: Occurrences of the invasive plant species Heracleum sosnowskyi Manden in the Komi Republic were recorded and published in the Global Biodiversity Information Facility using the RIVR information system.
Abstract: Occurrences of the invasive plant species Heracleum sosnowskyi Manden. in the Komi Republic (northeastern part of European Russia) were recorded and published in the Global Biodiversity Information Facility (GBIF http://www.gbif.org) using the RIVR information system (http://ib.komisc.ru/add/rivr/en). RIVR stands for "Rasprostranenie Invasionnyh Vidov Rastenij" [Occurrence of Invasion Plant Species]. This citizen science project aims at collecting occurrence data about invasive plant species with the help of citizen scientists. Information can be added by any user after a simple registration (concept) process. However, the data published in GBIF are provided only by professional scientists. The total study area is approximately 19,000 km2. The GBIF resource contains 10894 Heracleum sosnowskyi occurrence points, each with their geographical coordinates and photographs of the plants in the locus of growth. The preliminary results of species distribution modelling on the territory of European North-East Russia presented.
15 citations
TL;DR: A preliminary checklist of African Iconella and Surirella is presented and 94 names are contained on this list, with some names either unrevised or unrevisable since morphological data is missing.
Abstract: To comply with the new phylogeny within the Surirellales as supported by molecular and morphological data, re-evaluations and re-combinations of taxa from and within the genera Surirella, Cymatopleura, and Stenopterobia and with the re-established genus Iconella are necessary. Since the African diatom flora is rich with taxa from these genera, especially Iconella, and the authors have studied these taxa recently, describing also new taxa, a preliminary checklist of African Iconella and Surirella is here presented. 94 names are contained on this list. 57 taxa have been transferred to Iconella; 55 taxa were formerly ranked within Surirella and two taxa within Stenopterobia. 10 taxa have stayed within Surirella and six taxa have been transferred from Cymatopleura to Surirella. 20 Surirella and 1 Stenopterobia names are listed which are either unrevised or unrevisable since morphological data is missing. Four names and taxa described by Ehrenberg are here typified. Two had been transferred to Iconella already: Iconella bifrons (Ehrenb.) Ruck & Nakov and Iconella splendida (Ehrenb.) Ruck & Nakov. Two are re-transferred from Cymatopleura to Surirella: Surirella librile (Ehrenb.) Ehrenb. and Surirella undulata (Ehrenb.) Ehrenb.; both taxa are currently known by their younger synonyms: Cymatopleura solea (Breb.) W. Smith and Cymatopleura elliptica (Breb. ex Kutzing) W. Smith. Lectotypes for Iconella bifrons, I. splendida, Surirella librile, and S. undulata were designated.
15 citations
TL;DR: Fifteen new species are described and illustrated with line drawings and distribution maps; all species are narrow endemics except I. velutinifolia which is found in Brazil and Peru; of the others, 12 are found inBrazil and one each in Paraguay and Peru.
Abstract: The importance of discovering, describing and cataloguing poorly known species in herbarium collections is discussed. It is a spur to efforts at rediscovery and consequent conservation efforts. The problems faced in describing species from limited material are discussed and our methods and criteria in making a decision are described. Prospects for future novelties are briefly assessed. Fifteen new species are described and illustrated with line drawings and distribution maps: Ipomoea attenuata J.R.I. Wood & Scotland, I. cuscoensis J.R.I. Wood & P. Munoz, I. dasycarpa J.R.I. Wood & Scotland, I. dolichopoda J.R.I. Wood & R. Degen, I. ensiformis J.R.I.Wood & Scotland, I. fasciculata J.R.I. Wood & Scotland, I. graminifolia J.R.I. Wood & Scotland, I. kraholandica J.R.I. Wood & Scotland, I. longirostra J.R.I. Wood & Scotland, I. revoluta J.R.I. Wood & Scotland, I. scopulina J.R.I. Wood &. Scotland, I. uninervis J.R.I. Wood & Scotland, I. veadeirosii J.R.I. Wood & Scotland, I. velutinifolia J.R.I. Wood & Scotland, I. walteri J.R.I. Wood & Scotland. All species are narrow endemics except I. velutinifolia which is found in Brazil and Peru; of the others, 12 are found in Brazil and one each in Paraguay and Peru.
15 citations
TL;DR: A new species of Acanthaceae, Strobilanthes namkadingensis Soulad, is described and illustrated, characterized by long spicate inflorescences consisting of 6-32 flowers, yellow corolla, the absence of long white hairs on the bracts and 4–6 seeds per capsule.
Abstract: A new species of Acanthaceae, Strobilanthes namkadingensis Soulad. & Tagane from Nam Kading National Protected Area, Bolikhamxay Province, central Laos, is described and illustrated. It is characterized by long spicate inflorescences consisting of 6-32 flowers, yellow corolla, the absence of long white hairs on the bracts and 4-6 seeds per capsule. Three DNA barcode regions of the partial genes for the large sub-unit ribulose-1,5-bisphosphate carboxylase oxygenase (rbcL) and maturase K (matK) and internal transcribed spacers (ITS) are also provided.
14 citations
TL;DR: The increase in floristic knowledge is illustrated through the improvement of a herbarium collection in Rio Grande do Norte – the Brazilian state with the lowest levels of plant richness, with 71 new occurrences of vascular plants for RN.
Abstract: A National Forest Inventory (NFI) encompassing the entire territory of Brazil is in progress. It is coordinated and promoted by the Brazilian Forest Service of the Ministry of Environment. In each state, the NFI collaborates with local herbaria by receiving collected plant material and performing species identification. Consultants are hired by the NFI and work at the local herbaria under the supervision of a curator. In exchange for curatorial assistance, the NFI provides equipment and consumables for the herbarium. Other public projects collaborating with NFI are Reflora and the Brazilian Biodiversity Information System (SiBBr). Both projects have online platforms that seek to connect herbaria and make all their data freely available, including high quality digital images of specimens. Through inter-institutional collaboration, the joint interests of NFI, Reflora, SiBBr and local herbaria have improved collections, expanded the online Reflora database, and provided the NFI with verified species lists. These strategic uses of public funding are positively affecting Botany, particularly during a period of economic crisis and cuts in research. Here, we illustrate the increase in floristic knowledge through the improvement of a herbarium collection in Rio Grande do Norte (RN) - the Brazilian state with the lowest levels of plant richness. We report 71 new occurrences of vascular plants for RN, belonging mainly to the Poaceae, Fabaceae and Malvaceae. Most of the species with new occurrences have a Neotropical distribution (21 spp.) and only seven are restricted to the Brazilian Northeast. Our findings highlight previous gaps in RN's floristic knowledge. The partnership NFI, Reflora, SiBBr and the UFRN herbarium improved herbarium curation, digital collection, and quality of data. Finally, a fellowship provided by Reflora and SiBBr allowed improving curation by distributing duplicates and incorporating the Herbarium of Câmara Cascudo Museum.
TL;DR: The expansion of sect.
Abstract: In this study, we expanded Acer sect. Rubra Pax to include A. sect. Hyptiocarpa Fang. Traditionally, section Rubra comprises two iconic species, Acer rubrum Linnaeus (red maple) and A. saccharinum Linnaeus (silver maple), of eastern North American forests as well as the rare Japanese montane species, A. pycnanthum K. Koch. Section Hyptiocarpa consists of A. laurinum Hasskarl and A. pinnatinervium Merrill, which occur in subtropical and tropical regions of southwestern China to southeast Asia. Here, we confirm prior phylogenetic results showing the close relationship between sects. Rubra and Hyptiocarpa, and we use scanning electron microscopy to demonstrate that leaves of species within these sections have similar arrangements of cuticular waxes, which account for the silvery color of their abaxial surfaces. We describe that the sections also share labile sex expression; inflorescences that range from compound racemose thyrses, to racemes or umbels and that may have undergone evolutionary reduction; and several features of their fruits, such as seed locules without keels, basal portion of wings straight, acute attachment angle between mericarps, and production of some mericarps that are seedless and partially developed at maturity. Our expansion of sect. Rubra to include sect. Hyptiocarpa better elucidates the biogeographic and evolutionary history of these species. Additionally, we show that A. laurinum and A. pinnatinervium have intergrading morphology and are probably synonymous, but we note that further studies are required to conclude their taxonomic status.
TL;DR: Two new Selaginella species and a novel combination from South America are proposed and discussion on taxonomic affinities and information on habitat, distribution and phenology, as well as on conservation status are provided.
Abstract: Two new Selaginella species (i.e. S. altheae Valdespino and S. squamulosa Valdespino) and a novel combination [i.e. S. philipsonii (Jermy & Rankin) Valdespino] from South America are proposed. Descriptions, illustrations (line drawings and scanning electron micrographs, SEM, images), discussion on taxonomic affinities and information on habitat, distribution and phenology, as well as on conservation status are provided for each. Selaginella altheae is morphologically similar to species with erect, fern-like habit placed in the "Selaginella flabellata (L.) Spring group" as defined by Hieronymus, while S. squamulosa is allied to a species assembly with centipede-like habit here informally termed the "Selaginella vernicosa Baker group;" whereas S. philipsonii with its moss-like habit may be associated with species in the "Selaginella jungermannioides (Gaudich.) Spring group" or those centered on S. ovifolia Baker. All taxa here proposed are classified in subg. Stachygynandrum.
TL;DR: Polypodium chrysolepis constitutes an isolated lineage among the neotropical polygrammoid ferns, close to Serpocaulon and the grammitids, and is recognized here in a new genus.
Abstract: Polypodiaceae is one of the most diverse and abundant families of ferns in tropical and subtropical forests. Despite multiple studies investigating its phylogeny and taxonomy, several generic boundaries within the family still need clarification. One of the most problematic circumscriptions is that of Polypodium L., and one species that still contributes to this uncertainty is Polypodium chrysolepis Hook. The main goal of this study was to use molecular and morphological data to clarify the relationships of P. chrysolepis inside the polygrammoid clade. Sequences from three plastid regions (cpDNA - rbcL, rps4 and rps4-trnS IGS) from fifty species belonging to thirty-two genera of Polypodiaceae were analyzed using maximum likelihood and Bayesian inference. Polypodium chrysolepis constitutes an isolated lineage among the neotropical polygrammoid ferns, close to Serpocaulon and the grammitids, and is recognized here in a new genus. It can be distinguished by its entire leaves with free veins and peltate, pedicellate, lanceolate paraphyses. A new combination, Adetogramma chrysolepis, is proposed and a new taxonomic treatment is presented; its conservation status was assessed using IUCN Red List Categories and Criteria.
TL;DR: S. himalayensis is described as a new species based primarily on molecular phylogenetic evidence followed by morphological comparison with other Asian Spiranthes species and shows close affinity to S. nivea which is endemic to Taiwan.
Abstract: Spiranthes himalayensis is described here as a new species based primarily on molecular phylogenetic evidence followed by morphological comparison with other Asian Spiranthes species. It is distributed widely from southern India to tropical China. Phylogenetic analysis shows its close affinity to S. nivea which is endemic to Taiwan. Morphologically, the new species looks close to S. sinensis and S. hongkongensis. S. himalayensis is an allogamous species which can be differentiated from its allies on the basis of pubescent plant body, floral bract longer or of the same length as that of ovary, petals with blunt apex, labellum width around hypochile same as the width of epichile, epichile widely flabellate or semi-tunicate, column length equal to or more than 1.5mm, clavate operculum attached to the column on the broader part by an arm-like extension emerging from the upper part of column and a well developed rostellum partitioning the stigma and pollinarium.
TL;DR: Coelogyne putaoensis is a new species of section Ocellatae from Putao, Kachin State, Myanmar that is morphologically similar to C. taronensis and C. weixiensis, presumably its nearest relatives.
Abstract: Coelogyne putaoensis, a new species of section Ocellatae from Putao, Kachin State, Myanmar, is described and illustrated. It is morphologically similar to C. taronensis and C. weixiensis, presumably its nearest relatives. An identification key and colour photographs are provided. A preliminary risk-of-extinction assessment according to the IUCN Red List categories and criteria is given for the new species.
TL;DR: Two new species of Protium (Burseraceae) are described and illustrated and proposed as a new combination based on Trichilia brenesii, a name that was based on a specimen collected with flowers in the mountains near San Ramón, Alajuela Province, Costa Rica.
Abstract: Two new species of Protium (Burseraceae) are described and illustrated: Protium aguilariisp. nov., from the Pacific slope of the Osa Peninsula, Puntarenas Province, Costa Rica; and Protium hammeliisp. nov., from wet forests on the Caribbean slopes of Nicaragua and Costa Rica. In addition, Protium brenesiicomb. nov., is proposed as a new combination based on Trichilia brenesii, a name that was based on a specimen collected with flowers in the mountains near San Ramon, Alajuela Province, Costa Rica. It is compared with Protium costaricense, a similar species with which it has been confused for more than 90 years. Finally, illustrations and specimen citations are provided for all the aforementioned taxa, and some others with which they have been confused.
TL;DR: The user requirements analysis conducted for a new herbarium web portal was to identify the required functionality, but also to assist in the prioritization of software development and data acquisition.
Abstract: The digitization of herbaria and their online access will greatly facilitate access to plant collections around the world. This will improve the efficiency of taxonomy and help reduce inequalities between scientists. The Botanic Garden Meise, Belgium, is currently digitizing 1.2 million specimens including label data. In this paper we describe the user requirements analysis conducted for a new herbarium web portal. The aim was to identify the required functionality, but also to assist in the prioritization of software development and data acquisition. The Garden conducted the analysis in cooperation with Clockwork, the digital engagement agency of Ordina. Using a series of interactive interviews, potential users were consulted from universities, research institutions, science-policy initiatives and the Botanic Garden Meise. Although digital herbarium data have many potential stakeholders, we focused on the needs of taxonomists, ecologists and historians, who are currently the primary users of the Meise herbarium data portal. The three categories of user have similar needs, all wanted as much specimen data as possible, and for those data, to be interlinked with other digital resources within and outside the Garden. Many users wanted an interactive system that they could comment on, or correct online, particularly if such corrections and annotations could be used to rank the reliability of data. Many requirements depend on the quality of the digitized data associated with each specimen. The essential data fields are the taxonomic name; geographic location; country; collection date; collector name and collection number. Also all researchers valued linkage between biodiversity literature and specimens. Nevertheless, to verify digitized data the researchers still want access to high quality images, even if fully transcribed label information is provided. The only major point of disagreement is the level of access users should have and what they should be allowed to do with the data and images. Not all of the user requirements are feasible given the current technical and regulatory landscape, however, the potential of these suggestions is discussed. Currently, there is no off-the-shelf solution to satisfy all these user requirements, but the intention of this paper is to guide other herbaria who are prioritising their investment in digitization and online web functionality.
TL;DR: A comprehensive taxonomic revision of Herminium is presented, based on field observations and morphological studies, which recognizes 49 species grouped into six formal sections, including one new species, herminium tibeticum, from Tibet.
Abstract: Herminium (Orchidaceae, Orchidoideae) is a medium-sized genus widespread in the northern hemisphere, with a clear centre of diversity in the Himalayas. We present a comprehensive taxonomic revision of Herminium based on field observations and morphological studies, for which we examined about 2500 specimens. We recognize 49 species grouped into six formal sections, including one new species, Herminium tibeticum, from Tibet. We provide an identification key to the species, descriptions of the species, notes on ecology and distribution, and complete nomenclature for each species, including typifications. We here designate lectotypes for five species and reduce four taxa to synonymy.
TL;DR: Despite the close affinity of these three species, they can be distinguished by rhizome differences, stem-leaves, the morphology of flower (e.g., petals), and the number of per inflorenscence.
Abstract: Due to some common or similar features (e.g., small leaf, spurless, yellow flower), three Chinese species of the genus Epimedium (Berberidaceae), E. ecalcaratum, E. platypetalum, and E. campanulatum, are controversial based on morphological characteristics. In the present study, the descriptions of morphological characteristics for the three species were revised based on extensive studies and observations both in field and in herbaria. In general, E. ecalcaratum has long creeping rhizomes 1-3 mm in diameter, two alternate or opposite trifoliolate leaves, 7-14 flowers, and petals obovate and apex subacute. Epimedium platypetalum has short or long-creeping rhizomes 1-3 mm in diameter, one trifoliolate leaf, 2-6 flowers, and petals oblong and apex rounded. Epimedium campanulatum has compact rhizomes 4-6 mm in diameter, two alternate or opposite trifoliolate leaves, 15-43 flowers, and petals obovate and apex rounded. Through comparison, we found that despite the close affinity of these three species, they can be distinguished by rhizome differences, stem-leaves, the morphology of flower (e.g., petals), and the number of per inflorenscence.
TL;DR: The dataset includes barcodes for 29 plant families and 309 genera that did not have sequences flagged as barcodes in GenBank and sequences from officially recognized barcoding genetic markers meet the data standard of the Consortium for the Barcode of Life.
Abstract: The Global Genome Initiative has sequenced and released 1961 DNA barcodes for genetic samples obtained as part of the Global Genome Initiative for Gardens Program. The dataset includes barcodes for 29 plant families and 309 genera that did not have sequences flagged as barcodes in GenBank and sequences from officially recognized barcoding genetic markers meet the data standard of the Consortium for the Barcode of Life. The genetic samples were deposited in the Smithsonian Institution's National Museum of Natural History Biorepository and their records were made public through the Global Genome Biodiversity Network's portal. The DNA barcodes are now available on GenBank.
TL;DR: The most useful character to segregate species groups within the different taxonomic sections was the arrangement of the sclerenchyma, and a remarkable variability of this character was found in the species of Festuca section Festuca, especially in those located in other lineages according to molecular markers.
Abstract: A study of the leaf anatomy in the species of the genus Festuca present in the Iberian Peninsula was made. A total of 68 taxa were included and 15 characters were measured in leaf cross-section. The major anatomical features of each taxonomic group were characterized, and some variability was observed in the taxa. The anatomical patterns observed were compared and discussed with the relationships suggested by the molecular analyses. The leaf outline, the presence or absence of complete girders, and the development degree of the bulliform cells were the main characters to differentiate among fescue species of the fine-leaved clade and those of the broad-leaved clade. The most useful character to segregate species groups within the different taxonomic sections was the arrangement of the sclerenchyma, and a remarkable variability of this character was found in the species of Festuca section Festuca, especially in those located in other lineages according to molecular markers. Most of the anatomical patterns were not exclusive of the sections or lineages, and only some taxa could be anatomically differentiated at species level based on a set of non-taxative characters. The discordant pattern observed in F. henriquesii, a species traditionally included in Festuca sect. Festuca that shared anatomical features with the species of "F. rubra complex", suggests its possible inclusion in the sect. Aulaxyper pending further taxonomic and phylogenetic analyses.
TL;DR: A new record to the Brazilian territory, the rediscovery of a species exclusively known from the cultivated type collection, the description of a new taxon, and synonyms for T. crassula and T. pilosula are presented.
Abstract: We present a new record to the Brazilian territory (i.e. Tradescantia boliviana), the rediscovery of a species exclusively known from the cultivated type collection (i.e. T. valida), the description of a new taxon (i.e. T. chrysophylla), synonyms for T. crassula and T. boliviana, correct the typification of T. crassula, and designation of a lectotype for T. ambigua and T. ambigua var. pilosula. Furthermore, we present illustrations, comments, distribution maps, and identification keys for the studied taxa.
TL;DR: The moss flora of the Bío-Bío Region (Región VIII) in south-central Chile where collections were made in 2001–2003 is reported, with one species new to South America, four species new in Chile and 16 new to the Region.
Abstract: This is the final report on the moss flora of the Bio-Bio Region (Region VIII) in south-central Chile where collections were made in 2001-2003. Reported in this paper are one species new to South America, four species new to Chile and 16 species new to the Region. With these new additions the total number of taxa in the Bio-Bio Region is 343, corresponding to 331 species and 12 infraspecific taxa. A complete checklist of the mosses for all the provinces in the Region is presented.
TL;DR: In this paper, the Neotropical genera Ruizodendron and Pseudephedranthus (Annonaceae) have been extended beyond the Upper Rio Negro region of Brazil (Amazonas) and adjacent Venezuela (P. fragrans), to include Guyana, Suriname, and the Brazilian state of Para.
Abstract: We present revisions of the Neotropical genera Ruizodendron and Pseudephedranthus (Annonaceae). Ruizodendron includes a single species R. ovale. Pseudephedranthus now comprises two species, with the description of the new species P. enigmaticus sp. nov. extending the range of the genus beyond the Upper Rio Negro region of Brazil (Amazonas) and adjacent Venezuela (P. fragrans), to include Guyana, Suriname, and the Brazilian state of Para. An overview is provided of current revisions of Neotropical Annonaceae genera that will aid in accessing proper species information for this frequently encountered tropical rain forest family.
TL;DR: The species is named Espeletia praesidentis after the name of the páramo, and it is dedicated to the President Juan Manuel Santos, for his persistent efforts in working for peace for Colombia.
Abstract: A new species of Espeletia from the Paramo de Presidente in northeastern Colombia is described. The species is named Espeletia praesidentis after the name of the paramo, and it is dedicated to the President Juan Manuel Santos, for his persistent efforts in working for peace for Colombia. The new species is closely related to Espeletia dugandii, but differs in the shape and colour of the leaves and arrangements of the capitulescences. A large population was found, but its total extension is yet to be determine.
TL;DR: The maximum-likelihood and Bayesian-inference phylogenetic analyses unambiguously place Dryopolystichum within Lomariopsidaceae, a position not previously suggested, rendering Lomaropsid Families as one of the most morphologically heterogeneous fern families.
Abstract: The monotypic fern genus Dryopolystichum Copel. combines a unique assortment of characters that obscures its relationship to other ferns. Its thin-walled sporangium with a vertical and interrupted annulus, round sorus with peltate indusium, and petiole with several vascular bundles place it in suborder Polypodiineae, but more precise placement has eluded previous authors. Here we investigate its phylogenetic position using three plastid DNA markers, rbcL, rps4-trnS, and trnL-F, and a broad sampling of Polypodiineae. We also provide new data on Dryopolystichum including spore number counts, reproductive mode, spore SEM images, and chromosome counts. Our maximum-likelihood and Bayesian-inference phylogenetic analyses unambiguously place Dryopolystichum within Lomariopsidaceae, a position not previously suggested. Dryopolystichum was resolved as sister to a clade comprising Dracoglossum and Lomariopsis, with Cyclopeltis as sister to these, but clade support is not robust. All examined sporangia of Dryopolystichum produced 32 spores, and the chromosome number of sporophyte somatic cells is ca. 164. Flow cytometric results indicated that the genome size in the spore nuclei is approximately half the size of those from sporophyte leaf tissues, suggesting that Dryopolystichum reproduces sexually. Our findings render Lomariopsidaceae as one of the most morphologically heterogeneous fern families. A recircumscription is provided for both Lomariopsidaceae and Dryopolystichum, and selected characters are briefly discussed considering the newly generated data.
TL;DR: A new circumscription and a total of six microendemic species, four of them new to science, are presented for Siderasis, based on field and herbaria studies, and cultivated material.
Abstract: A new circumscription and a total of six microendemic species, four of them new to science, are herein presented for Siderasis, based on field and herbaria studies, and cultivated material. We provide an identification key to the species and a distribution map, description, comments, conservation assessment, and illustration for each species. Also, we present an emended key to the genera of subtribe Dichorisandrinae, and comments on the morphology and systematics of the subtribe.
TL;DR: All published names of Croton from Madagascar, the Comoros, and the Mascarenes are treated here, and a total of 133 names are newly treated as synonyms.
Abstract: All published names of Croton from Madagascar, the Comoros, and the Mascarenes are treated here. We indicate which names are currently accepted (123 native species and 1 introduced), which ones we consider to be heterotypic synonyms (188), which ones are doubtful (25), and which ones should be excluded (5). We newly designate lectotypes for 108 names, and epitypes for C. anisatus Baill., C. nobilis Baill., and C. submetallicus Baill. A total of 133 names are newly treated as synonyms. One new combination is made, Croton basaltorum (Leandri) P.E.Berry for C. antanosiensis var. basaltorum Leandri, and one new name is proposed, Croton toliarensis B.W.vanEe & Kainul. for C. tranomarensis var. rosmarinifolius Radcl.-Sm.
TL;DR: Tan et al. as mentioned in this paper described and illustrated a new species, Premna bhamoensis Y. T. Tan & B. Li (Lamiaceae), from Myanmar.
Abstract: In the present study, we describe and illustrate a new species, Premna bhamoensis Y. T. Tan & B. Li (Lamiaceae), from Myanmar. In the 1980s, this species was transplanted from Bhamo County in northeastern Myanmar to the Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences. The species shows striking morphological similarity to P. menglaensis B. Li, and thus, has been misidentified as the latter for a long period of time. However, morphological comparison revealed that P. bhamoensis is distinct from P. menglaensis in many aspects. Moreover, literature survey and specimen examinations also indicated that P. bhamoensis is undoubtedly different from all seven known congenetic species recorded from Kachin State, Myanmar, and a key for their identification has been provided in this paper.