Showing papers in "Plant Ecology and Evolution in 2019"

Haslea nusantara (Bacillariophyceae), a new blue diatom from the Java Sea, Indonesia: morphology, biometry and molecular characterization

Abstract: Background and aims – The present study aims to describe a new species of pennate blue diatom from the genus Haslea, H. nusantara sp. nov., collected from Semak Daun Island, the Seribu Archipelago, in Indonesian marine waters. Methods – Assessment for species identification was conducted using light microscopy, Scanning Electron Microscopy and molecular techniques. The morphological characteristics of H. nusantara have been described, illustrated and compared to other morphologically similar blue Haslea taxa, distributed worldwide. Additionally, molecular characterization was achieved by sequencing plastidial and mitochondrial genomes. Key results – This new species, named Haslea nusantara, cannot be discriminated by its morphology (stria density) but it is characterized by its gene sequences (rbcL chloroplast gene and cox1 mitochondrial gene). Moreover, it differentiates from other blue Haslea species by the presence of a thin central bar, which has been previously reported in non-blue species like H. pseudostrearia. The complete mitochondrion (36,288 basepairs, bp) and plastid (120,448 bp) genomes of H. nusantara were sequenced and the gene arrangements were compared with other diatom genomes. Phylogeny analyses established using rbcL indicated that H. nusantara is included in the blue Haslea cluster and close to a blue Haslea sp. found in Canary Islands (H. silbo sp. ined.). Conclusions – All investigations carried out in this study show that H. nusantara is a new blue-pigmented species, which belongs to the blue Haslea clade, with an exceptional geographic distribution in the Southern Hemisphere.

A synopsis of feral Agave and Furcraea (Agavaceae, Asparagaceae s. lat.) in the Canary Islands (Spain).

Abstract: 1Meise Botanic Garden, Nieuwelaan 38, B-1860 Meise, Belgium 2Schenefelder Holt 3, 22589 Hamburg, Germany 3Jardín Botánico Canario Viera y Clavijo, Unidad Asociada al CSIC, C/ El Palmeral no 15, Tafira Baja, E-35017 Las Palmas de Gran Canaria, Gran Canaria, Canary Islands, Spain 4Instituto de Estudios Ambientales y Recursos Naturales (i-UNAT), Campus Universitario de Tafira, Universidad de las Palmas de Gran Canaria, E-35017 Las Palmas de Gran Canaria, Gran Canaria, Canary Islands, Spain 5Jardín de Aclimatación de La Orotava (ICIA). C/ Retama 2, 38400 Puerto de la Cruz, Canary Islands, Spain 6Viceconsejería de Medio Ambiente. Gobierno de Canarias. C/ Avda. de Anaga, 35. Planta 11. 38071 Santa Cruz de Tenerife, Canary Islands, Spain 7Department of Botany, P.O. Box 77000, Nelson Mandela University, Port Elizabeth, 6031 South Africa / Centre for Functional Ecology, Departamento de Ciências da Vida, Calçada Martim de Freitas, Universidade de Coimbra, 3001-455 Coimbra, Portugal *Corresponding author: filip.verloove@meisebotanicgarden.be REGULAR PAPER

Unexplored diversity of microscopic myxomycetes: evidence from environmental DNA

Abstract: Background and aims – Recent studies showed the position of two slime mould species with microscopic sporocarps, Echinosteliopsis oligospora and Echinostelium bisporum, within the class Myxomycetes. These minute species are seldom seen in studies based on detection of sporocarps and can easily be confused with protosteloid amoebozoans.Methods – We searched all published ePCR data sets that targeted myxomycete 18S rDNA for the presence of environmental sequences similar to E. oligospora and Echinosteliales in traditional circumscription, and performed phylogenetic analyses that included short environmental sequences and full-length 18S rDNA sequences representing all the major groups of myxomycetes.Key results – We report 19 unique sequences which are closely related to E. bisporum or E. oligospora based on sequence similarity (73.1–95.2% similarity) and which form well-supported monophyletic clades with these species in phylogenetic analyses. They may represent new species that are not yet described. Our phylogeny based on full-length 18S rDNA sequences further confirms the position of E. bisporum and E. oligospora within myxomycetes and the paraphyly of the order Echinosteliales in its traditional circumscription.Conclusions – Our results show that ePCR-based studies can reveal myxomycete taxa that often escape detection by traditional approaches, including potentially new species, and thus provide valuable new data on diversity and ecology of myxomycetes. As such, strategies for studying myxomycetes biodiversity should be revised, focusing also on molecular detection techniques in addition to the sporocarp-based ones.

Rampant homoplasy and adaptive radiation in pennate diatoms

Abstract: Background and aims – We examine the possibility of the independent evolution of the same features multiple times across the pennate diatom tree of life. Methods and key results – Features we have studied include symmetry, raphe number and amphoroid symmetry. Phylogenetic analysis, with both morphological and molecular data suggest in each of these cases that the features evolved from 5 to 6 times independently. We also look at the possibility of certain features having evolved once and diagnosing large genera of diatoms, suggestive of an adaptive radiation in genera such as Mastogloia, Diploneis and Stauroneis. Conclusion – Formal phylogenetic analyses and recognition of monophyletic groups allow for the recognition of homoplasious or homologous features.

Morphological reconsideration of the araphid genus Pseudostaurosira (Bacillariophyceae), a revision of Gedaniella, Popovskayella and Serratifera, and a description of a new Nanofrustulum species

Abstract: Background and aims – As a result of the description of many new species, reanalyses of type material, and information becoming available on valve morphogenesis in small araphid diatoms lacking a rimoportulae, the existing classification scheme at the genus level needs revision. Because morphological information has increased manyfold since the system provided by Williams & Round (1987), it may now be possible to find distinguishing characters in order to produce a more stable and useful framework, encompassing a morphogenetic perspective, which could then guide the placement of newly discovered taxa. This new framework could also be used to help assess the molecular information generated for the group, based on which many new genera are being erected, but perhaps without proper pondering of morphological data. Methods – A thorough review was made of available published information on the ultrastructure of small-celled araphid diatoms lacking rimoportulae. In addition, image databases were searched, and new light and scanning electron microscopical observations made of some hitherto undescribed species. Key results and conclusions – We provide a table of putative distinguishing features for nine genera (Nanofrustulum, Opephora, Pseudostaurosira, Pseudostaurosiropsis, Punctastriata, Sarcophagodes, Stauroforma, Staurosira and Staurosirella), together with a discussion on their value for discriminating these small diatoms using a morphogenetic perspective. Based on our findings, we amend the genus Pseudostaurosira, establishing wide and short vimines as its most characteristic feature. We use our system in describing a new species from Bolivia, which we place in Nanofrustulum based on its quasifract copulae, the distinguishing trait of the genus. The new species is distinguished from its congeners by its heteropolar valves, apical pore field features, and the multiseriate areolae. We also examine the three genera Popovskayella, Gedaniella, and Serratifera, the latter two recently erected based on molecular information. Since none of these latter genera pass the morphogenetic evaluation we think is essential, we place them in synonymy with other genera and provide the consequent nomenclatural changes. Finally, we make several new combinations in Nanofrustulum, Pseudostaurosira, Sarcophagodes and Staurosirella.

Molecular phylogeny of Artemisia (Asteraceae-Anthemideae) with emphasis on undescribed taxa from Gilgit-Baltistan (Pakistan) based on nrDNA (ITS and ETS) and cpDNA (psbA-trnH) sequences.

Abstract: Background – Gilgit-Baltistan, the Northeast region of Pakistan, is well known for its floristic diversity, including members of the genus Artemisia. Artemisia is a large, taxonomically complex genus including ~500 species of both herbs and shrubs. This study was conducted to determine the phylogenetic position of ten undescribed Artemisia taxa from northern Pakistan, using nrDNA internal transcribed spacer (ITS), external transcribed spacer (ETS) and cpDNA intergenic spacer (psbA-trnH) regions.Methods – The phylogenetic relationships of 28 taxa of Artemisia using separate and combined data sets of sequences of three markers (ITS, ETS and psbA-trnH) were analysed with maximum parsimony, maximum likelihood, and Bayesian approaches. Key results – The results resolve northeastern Pakistani Artemisia, which represent five morphologically defined subgenera, into ten major clades. Subgenera Artemisia and Absinthium are shown to be polyphyletic, while Dracunculus, Pacifica and Tridentatae appear monophyletic. All species of subgenus Seriphidium are retrieved in a single clade that also includes annual species from subgenus Artemisia. In the Flora of Pakistan, Seriphidium is described as a separate genus but in this study, Seriphidium fell within the genus Artemisia. In addition, on the basis of phylogenetic analysis, we present evidence that ten as-yet undescribed taxa are present in northeastern Pakistan based on newly recognized three groups (Groups I, II and III) of taxa within the genus Artemisia. One undescribed taxon from group I was placed within the subgenus Dracunculus clade and the remaining nine taxa from groups II and III were placed in the subgenus Absinthium clade. Morphological studies coupled with modern molecular techniques may lead to a new infrageneric classification of the genus Artemisia. It will also clarify and characterize the undescribed taxa reported in this study.

Spines and homologues in ‘araphid’ diatoms

Abstract: Background and aims – Many diatoms have spines on the surface of their valves. These structures differ from one taxon to another. Are all these spines the same? Are they homologues of one another? This paper sets out to explore some of the issues surrounding the determination of homologues with reference to members of Fragilariaceae. Methods – A variety of spines from species in Fragilariaceae are examined (in the SEM) and position on the valve documented relative to those already recorded in the literature. Key results – Spines that occur on the valves of some ‘araphid’ diatoms in Fragilariaceae can be interpreted in the light of where they are found. Spines that occur on the virgae can be thought of as modifications of that structure; spines that occur on the vimines can be thought of as modifications of that structure – the two kinds of spines are not homologues of each other. The term ‘spine’, on its own, is not useful for understanding taxon relationships; the term ‘spine’ is not even a character in the comparative biology sense but a descriptive catch-all for something that simply ‘sticks out from a surface’. Conclusions – Systematic characters, those applicable to comparative biology, are modifications of other characters and so are, in one sense, like taxonomies: hierarchical. A consequence of this is that plotting morphological characters on molecular trees of relationships is a futile endeavour – treating characters and their modifications, as if they are static (unit) features of a non-changing entity, is book-keeping not science.

On the identity of the rare Fragilaria subconstricta (Fragilariaceae), with Fragilaria species forming ribbon-like colonies shortly reconsidered

Abstract: Background and aims – During phytoplankton surveys of a freshwater pond in Northeastern France, Fragilaria subconstricta (Bacillariophyceae) was observed. This rare diatom was present in large numbers in several plankton samples from Lachaussée Pond in the French Grand Est region. Methods – The morphology of Fragilaria subconstricta was examined in detail using light and scanning electron microscopy. Its identity is discussed and it is compared to the morphologically most similar species, especially Fragilaria capucina, F. mesolepta Rabenhorst, F. neointermedia and F. tenuistriata. Key results – Fragilaria subconstricta produces ribbon-like colonies and has narrow linear-lanceolate valves with slightly rostrate ends. The central area is rectangular, usually small or even absent. Spatulate linking spines are present all along the valve margins and a single rimoportula is located near one apex at the valve face-mantle junction. An amended diagnosis and new synonyms are proposed for this species. Additionally, the type material of Fragilaria mesolepta and a population of the very rare species Fragilaria capucina have been investigated and illustrated. Conclusions – Fragilaria subconstricta and F. tenuistriata are synonyms. Fragilaria capucina s. str. is a rare species in Europe, and the majority of records for this species should be considered part of the Fragilaria capucina “Sippenkomplex” sensu Krammer & Lange-Bertalot (1991).

Leaf physiological and structural plasticity of two Asplenium (Aspleniaceae) species coexisting in sun and shade conditions

Abstract: Background and aims – Relatively few studies have addressed the sun-shade response of fern species. Moreover, there is no information on species-specific plasticity patterns of such response, their relationship with species ecological requirements and the costs of such plasticity. The present study aims at filling these gaps by analysing the sun-shade plastic response of two Asplenium species that differ in their ecological requirements.Methods – We measured 27 leaf morphological, anatomical and physiological parameters using standard methods for A. ceterach and A. trichomanes in the field. The parameters were combined through Principal Component Analysis in order to highlight an integrated sun-shade response across species. Linear regression analysis was carried out to highlight the relationship between the calculated species plasticity patterns and the structural control on photosynthetic process.Key results – A significant degree of phenotypic plasticity was found for both species. Moreover, sun and shade leaves shared a common slope for the morpho-functional relationships reflecting no additional costs in terms of carbon assimilation. Even if the plastic responses of the two species scaled positively (R2 = 0.68, P = 4.667e‒07), A. trichomanes was characterized by a slightly higher anatomical plasticity (plasticity index = 0.19), while A. ceterach showed a higher physiological plasticity (0.60).Conclusion – A remarkable acclimation capacity for the two Asplenium species in response to different light conditions was highlighted. Nevertheless, A. ceterach seems to be more suited to cope with full sunlight conditions as compared to A. trichomanes, according to species ecological requirements.

Transitions in diatom assemblages and pigments through dry and wet season conditions in the Red River, Hanoi (Vietnam)

Abstract: Background and aims – Biomonitoring is an important tool for assessing river water quality, but is not routinely applied in tropical rivers. Marked hydrological changes can occur between wet and dry season conditions in the tropics. Thus, a prerequisite for ecological assessment is that the influence of ‘natural’ hydrological change on biota can be distinguished from variability driven by water quality parameters of interest. Here we aimed to (a) assess seasonal changes in water quality, diatoms and algal assemblages from river phytoplankton and artificial substrates through the dry-wet season transition (February–July 2018) in the Red River close to Hanoi and (b) evaluate the potential for microscopic counts and high-performance liquid chromatography (HPLC) analysis of chlorophyll and carotenoid pigments for biomonitoring in large tropical rivers. Methods – River water (phytoplankton) and biofilms grown on artificial glass substrates were sampled monthly through the dry (February–April) to wet (May–August) season transition and analysed via microscopic and HPLC techniques. Key results – All phototrophic communities shifted markedly between the dry and wet seasons. Phytoplankton concentrations were low (c. thousands of cells/mL) and declined as the wet season progressed. The dominant phytoplankton taxa were centric diatoms (Aulacoseira granulata and Aulacoseira distans) and chlorophytes (Scenedesmus and Pediastrum spp.), with chlorophytes becoming more dominant in the wet season. Biofilm diatoms were dominated by Melosira varians, and areal densities declined in the wet season when fast-growing pioneer diatom taxa (e.g. Achnanthidium minutissimum, Planothidium lanceolatum) and non-degraded Chlorophyll a concentrations increased, suggesting active phytobenthos growth in response to scour damage. Otherwise, a-phorbins were very abundant in river seston and biofilms indicating in situ Chlorophyll a degradation which may be typical of tropical river environments. The very large range of total suspended solids (reaching > 120 mg/L) and turbidity appears to be a key driver of photoautotrophs through control of light availability. Conclusions – Hydrological change and associated turbidity conditions exceed nutrient influences on photoautotrophs at inter-seasonal scales in this part of the Red River. Inter-seasonal differences might be a useful measure for biomonitoring to help track how changes in suspended solids, a major water quality issue in tropical rivers, interact with other variables of interest.

Novel marine diatom ssRNA virus NitRevRNAV infecting Nitzschia reversa

Abstract: Background and aims – Diatoms are one of the most species rich groups of organisms on Earth. They are fundamental in supporting the biomass of the natural environment. The presence of marine viruses can greatly influence diatom diversity in their natural environment and has attracted interest from multi-disciplinary research teams after a diatom infected virus was reported for the first time in the 21st century. As initial research in this field demonstrated, for the acquisition of a new virus it is important to learn about their infect hosts. Therefore, we have been searching for new viruses that infect diatoms. Methods – A clonal host species Nitzschia reversa was isolated from natural sea water. Aliquots of the filtrates obtained from this sea water were inoculated to yield the exponentially-growing isolated host species. The resultant lysate was used as a clonal lysate and treated as a clonal virus suspension. The suspension was then used for further analysis of various biochemical studies. Key results – We discovered and isolated a new virus that infected the pennate diatom Nitzschia reversa. Since this newly discovered virus was a single strand RNA virus, it has capsid proteins with 30 nm size icosahedron without an envelope. The species epithet is NitRevRNAV. Conclusions – In this study, we described the morphology, genome type and partial sequences, as well as lytic activities, of the new species NitRevRNAV. Of note, the virus harbours a positive-sense single-stranded RNA genome. These features were highly similar to those of previously known diatom RNA viruses therefore NitRevRNAV is a new member of the genus Bacillarnavirus in the Order Picornavirales.

Gomphonella olivacea (Bacillariophyceae) – a new phylogenetic position for a well-known taxon, its typification, new species and combinations

Abstract: Background and aims – Within the project “German Barcode of Life – Diatoms” common diatoms of German waters were routinely isolated and cultivated. In order to understand the taxonomy and phylogeny of the genus Gomphonema, one of the most common taxa of Central Europe, known currently either under the name Gomphonema olivaceum in Europe or Gomphoneis olivacea in America, was studied. Methods – Twenty unialgal strains were established from five different water bodies in Germany and one from Lake Balaton, Hungary, which supplied molecular data (18S V4 and rbcL) besides morphometric and ultrastructural data. In addition, on eight populations from different water bodies including the type from Denmark, morphometric and micromorphological studies by light and scanning electron microscopy were performed. Key results – Molecular and micromorphological data show that the target taxon neither belongs to Gomphonema Ehrenb. nor to Gomphoneis Cleve. By reinstating the genus name Gomphonella Rabenh., the nomenclatural and taxonomic enigma of this taxon is solved, and with the presentation of the type by Hornemann the authorship of the epithet is clarified. Molecular data for the unialgal strains and several environmental clones show that there is more diversity in the Gomphonella olivacea clade than can be identified morphologically. In addition, the establishment of the new species Gomphonella coxiae and Gomphonella acsiae is supported. The molecular data classified Gomphonella species as belonging to the Cymbellales but not to the Gomphonemataceae. In addition, molecular data put Gomphoneis tegelensis R.Jahn & N.Abarca also into Gomphonella. In order to make the genera Gomphoneis and Gomphonema monophyletic, their astigmate members are transferred to Gomphonella. Conclusions – The results clarify that the gomphonemoid outline is not restricted to the family Gomphonemataceae but seem to be distributed across the entire order Cymbellales. This is shown in this paper for the revived genus Gomphonella, which contains the astigmate group of Gomphoneis and Gomphonema besides the longly disputed G. olivacea. Only a polyphasic approach, combining molecular and micromorphological data for taxonomy, nomenclatural evaluation, and observations from clonal cultures can reveal the full intricacies of evolutionary relations.

Typification of the first recognized blue pigmented diatom, Haslea ostrearia (Bacillariophyceae)

Abstract: Background and aims – The blue pigmented diatom, Haslea ostrearia (Gaillon) Simonsen, which has been the material object for many physiological and ecological studies, was first described from oyster ponds in France as Vibrio ostrearius Gaillon; however, his study material seems not to be conserved. Methods – A thorough search to retrieve potential available historical collections has been conducted. Key results – It has been proven that no relevant historical material exists for H. ostrearia. Thus, an oyster pond at Bouin in Baie de Bourgneuf, France, was sampled in 2018 to obtain material allowing neotype designation. Conclusion – Slides and stubs have been deposited as neotype material of the species in the Muséum National d’Histoire Naturelle, Paris, France (PC). At the same time, this material is the generitype of the genus Haslea Simonsen. Furthermore, isoneotypes have been deposited at the British Museum (BM) and the Bremerhaven Hustedt collection (BRM).

Le chêne faginé (Quercus faginea, Fagaceae) en Algérie : potentiel germinatif et variabilité morphologique des glands et des semis

Abstract: The Portuguese Oak in Algeria (Quercus faginea, Fagaceae): germination potential and variability of acorn and seedling morphology Background and aims – The Portuguese Oak, Quercus faginea Lam. (Fagaceae) forms part of iconic Mediterranean forest communities and is of great ecological and taxonomic value in Algeria. Unfortunately, the species is under threat and its populations remain poorly characterized. The aim of this paper is to study the variability of acorn morphology and germination potential of Q. faginea in Algeria, to examine variability in the growth of seedlings and to evaluate the influence of physical treatments on germination capacity and the subsequent development of seedlings at the intra- and inter-provenance levels.Methods – Mature acorns from four Q. faginea provenances of the species in Algeria were used for this work. In each provenance, ten trees were selected, and 100 acorns collected from each tree. Prior to germination, phenotypic seed traits were measured and a set of physical treatments was performed. The germinated seedlings were transplanted into polyethylene bags and several characteristics of plant growth were measured.Key results – The comparative analysis on acorn morphology and germination features revealed heavier acorns in the Baloul provenance and smaller and lighter leaves in the Chelia provenance, in comparison with other provenances. Germination features and seedling growth showed that the size of the acorns had no influence on seedling development.Conclusions – Our results show a morphological variability of leaves and acorns of the Portuguese Oak at the inter-provenance level. This diversity is probably a consequence of genetic variation and / or variable environmental conditions of the provenances. The study of the germination and seedling development reveals a considerable potential for germination and growth. Given all the factors that threaten the persistence of Portuguese Oak in Algeria, we recommend conservation action for the species through reforestation, ex situ plantations and protective fences to avoid genuine and irreversible population regression, which would most likely lead to its disappearance. Contexte et buts visés – Le chêne faginé, Quercus faginea Lam. (Fagaceae), représente un intérêt patrimonial, écologique et taxonomique remarquable en Algérie, mais malheureusement l’espèce est menacée et peu étudiée. L’objectif de ce travail est d’étudier la variabilité morphologique et le potentiel germinatif des glands de Q. faginea en Algérie, d’examiner la variabilité de la croissance des semis et d’évaluer l’influence des traitements physiques sur le potentiel germinatif et le développement ultérieur des semis, tant au niveau intra- qu’inter-stationnel.Méthodes – Des glands mûrs de chêne faginé récoltés sur quatre stations de l’espèce en Algérie ont été utilisés. Sur chaque station, dix arbres ont été sélectionnés, représentés par 100 glands chacun. Une analyse de traits phénotypiques a été réalisée sur les glands ; ensuite un ensemble de traitements physiques ont été effectués afin de tester leur effet sur la germination. Les semis issus de la germination ont été transplantés dans des sachets en polyéthylène et plusieurs caractères de croissance ont été mesurés. Résultats-clés – L’étude comparative morphologique et germinative révèle des glands plus longs et plus lourds à la station de Baloul, et des feuilles plus petites et plus légères à la station de Chélia, en comparaison avec les autres stations. Un effet significatif des traitements sur la germination a été montré dans toutes les stations. La taille des glands n’a aucune influence sur le développement des jeunes semis.Conclusions – Nos résultats montrent une variabilité morphologique inter-stationnelle des feuilles et des glands du chêne faginé. Cette diversité est probablement la conséquence de variations génétiques et/ou des conditions environnementales des stations. L’étude de la germination et de l’évolution de plants révèle un potentiel germinatif et de croissance considérables. Compte tenu de l’ensemble des facteurs qui menacent la pérennité du chêne faginé en Algérie, nous recommandons des actions pour la conservation de l’espèce telles que des reboisements, des plantations ex situ et des clôtures de protection pour éviter une régression réelle et irréversible des peuplements qui conduirait très probablement à sa disparition.

Removal and predation of aril-covered seeds: the case of Afzelia bipindensis (Fabaceae – Detarioidae)

Abstract: Background and aims – Most tree species with aril-covered seeds are assumed to be dispersed by frugivores. However, the number of studied African rainforest plant species remains low. This study focused on Afzelia bipindensis, an important timber species, which produces seeds partly covered by an aril. Specifically, this study aimed to: (1) identify the dispersers and the predators of A. bipindensis seeds, (2) characterize the role of those dispersers and predators in the regeneration process, and (3) understand the role of the aril in seed germination in relation to the feeding behaviour of the identified dispersers. Methods – The study took place in a Gabonese evergreen rainforest in 2015 and in a Cameroonian semi-deciduous rainforest in 2016 and 2017. We conducted more than 100 hours of direct observations, and used camera traps to monitor animal activities for 3000 hours within the canopy and 10 000 hours on the ground under fruiting trees. Key results – Three rodent taxa (Cricetomys emini, Funisciurus isabella and an undetermined species of Muridae) were mainly observed interacting with the seeds but neither birds nor monkeys were observed. Rodents removed more than 90% of the seeds, after detaching the aril, to probably cache them in burrows or superficial caches. Seeds from which we manually removed the aril (mimicking rodent behaviour) had a higher germination rate.Conclusions – Rodents may play a more important role than expected in the dynamics of tree species producing aril-covered seeds.

Hymenochaetaceae (Basidiomycota, Hymenochaetales) from the Guineo-Congolian phytochorion: Phylloporia rinoreae sp. nov., an additional undescribed species from the Forest Global Earth Observatory Plot in Gabon

Abstract: Background and aims – The aim of this study is the continuation of an ongoing survey of Hymenochaetaceae (Basidiomycota, Hymenochaetales) from the lower Guinean sub-region in Central Africa. In this frame, a new species of Phylloporia is described from Gabon, based on morphological, ecological and phylogenetic data. Methods – The species is described using morphological methods, and ecological data. DNA-based phylogenetic analysis are also used to search for affinities.Key results – A new species of Phylloporia, P. rinoreae, is described based on specimens collected on living twigs of a shrubby Rinorea species (Violaceae), occurring in the Guineo-Congolian rain forest. Phylogenetic inferences using DNA sequence data from partial nuc 28S (region including the D1/D2/D3 domains) resolved this species as a distinct clade within the Phylloporia lineage. An identification key to the species reported from the Guineo-Congolian phytochorion is provided.Conclusion – Phylloporia rinoreae is the seventh species of the genus described from and so far only known from Gabon in the Lower Guinean phytogeographical sub-region.

Aulacoseira giraffensis (Bacillariophyceae), a new diatom species forming massive populations in an Eocene lake

Abstract: Background and aims – Diatoms began to inhabit freshwater by at least the Late Cretaceous, becoming well established by the early to middle Eocene. Aulacoseira, an important diatom in numerous ponds, lakes and rivers today, was one of the earliest known genera to colonize freshwater ecosystems. Members of this genus with characteristics familiar to those found on modern species became increasingly more abundant by the Eocene, and continued to thrive throughout the Miocene to the present. We describe a new species of Aulacoseira from an early to middle Eocene site near the Arctic Circle in northern Canada. Methods – Twelve samples taken from the Giraffe Pipe core were analysed in this study. Light and scanning electron microscopy were used to document morphological characters. Morphometric measurements were made from 200 specimens per sample (n = 1200), and used to investigate changes in valve size over time. Key results – The new species, Aulacoseira giraffensis, has valves with a length:width ratio close to 1, a hyaline valve face, straight mantle striae, a shallow ringleiste, branched linking spines, concave-convex complementarity on adjacent valve faces, and rimoportulae with simple papillae-like structure. The suite of characters, especially the highly branched spines, concave-convex valves and simple rimoportulae, is unique for this species. Large numbers of A. giraffensis specimens were found over a ten-metre section of the core, representing thousands of years. These high concentrations are indicative of abundant, bloom-like, growth. Conclusions – The locality represents one of the earliest known records of Aulacoseira dominating a freshwater community. Findings confirm that the morphological body plan for the genus was well established by the Eocene. Although findings indicate evolutionary stasis in morphological structure for A. giraffensis over a time scale of thousands of years, oscillations in valve morphometrics could potentially be used to trace changes in the environment of this ancient Arctic waterbody.

On the identity of Navicula gottlandica (Bacillariophyta), with the description of two new species Navicula eileencoxiana and Navicula bergstromiana from the Australo-Pacific region

Abstract: Background and aims : During the past two decades, the subantarctic diatom flora has been the subject of several detailed taxonomic revisions, resulting in the description of a large number of new species. During a survey of the freshwater diatom flora of Macquarie Island (southern Pacific Ocean), an unknown Navicula species was observed showing resemblance to Navicula gottlandica. Populations of similar diatoms (previously reported as N. gottlandica) from Tasmania were also investigated. We here present a detailed morphological analysis of these diatoms, and compare it with the type material of N. gottlandica. Methods : Materials were analysed using Light and Scanning Electron Microscopy. Key results : The southern hemisphere populations represent two hitherto unknown taxa here described as Navicula bergstromiana and N. eileencoxiana. Important morphological differences include valve shape, stria density, shape of the central area, ultrastructure of the external central raphe endings, presence of a distinct internal accessory rib, and the relative width of the external longitudinal silica strips covering the valve face with respect to the longitudinal fissures separating these strips. While the new taxa show some affinity with the genus Haslea, the internal apical structure of the raphe, the external structure of the terminal raphe fissures and the central raphe endings (often with tooth-like protrusions, creating the impression of a satellite pore), and the apparent lack of the typical sandwich-type Haslea valve ultrastructure support the position of N. gottlandica and both new taxa within the genus Navicula. Conclusions : The description of two additional species with close similarities to N. gottlandica (i.e. possessing the typical longitudinal striae/silica strips and tooth-like protrusions in hooked central raphe endings) suggests that the N. gottlandica species group is more diverse than previously thought. The existence of closely similar Navicula species recently described from rivers in tropical South America but also from marine littoral samples in South and North America and China, raises intriguing questions about their phylogenetic relationships, ecology and biogeography.

Analysis of the type material of Achnanthes minutissima var. macrocephala (Bacillariophyta) and description of two new small capitate Achnanthidium species from Europe and the Himalaya

Abstract: Background and aims – Two unknown benthic diatom species belonging to the genus Achnanthidium Kütz., and found in French and Nepalese freshwater habitats, were investigated. Both species are here described as new and compared with the original material of Achnanthes minutissima var. macrocephala Hust. [≡ Achnanthidium macrocephalum (Hust.) Round & Bukht.] from Indonesia. Methods – The morphology of three small and capitate Achnanthidium species was investigated using light microscopy (LM) and scanning electron microscopy (SEM). Key results – Achnanthidium coxianum sp. nov. (from the Himalaya) belongs to the group of species with hooked terminal raphe endings, while Achnanthidium peetersianum sp. nov. (from France) has variable terminal raphe endings which are usually slightly bent. Achnanthidium macrocephalum is a much rarer species and illustrations concerning its identity in the literature do not conform to the type studied here. Conclusions – The three species are similar in LM but clearly distinct in SEM. The shape of the areolae and terminal raphe endings separate the species. Achnanthidium macrocephalum has often been misidentified in studies from many areas of the world. It is similar to the new species in valve outline and in its small dimensions.

New Amphora and Halamphora (Bacillariophyta) species from springs in the northern Apennines (Emilia-Romagna, Italy)

Abstract: Background and aims – The detailed analysis of algae and cyanoprokaryotes in a heterogeneous group of spring habitats (including all the different typologies) of the northern Apennines (Emilia-Romagna Region, Italy) revealed a new Amphora species in a small mountain flowing spring with low conductivity, and a new Halamphora species in a large, inland-saline (Triassic gypsum), fast flowing spring (Poiano spring). The present study aims to describe in detail these two new species found in contrasting spring types. Methods – This study is based on light microscopy (both fresh –for plastids – and prepared materials) and scanning electron microscopy observations, as well as a thorough morphological, physical, chemical, and biological characterization of the habitats. Key results – Amphora eileencoxiae sp. nov. is most similar to A. vetula (and allied taxa), and is characterized by the outline with acutely rounded, moderately ventrally bent ends, by the dimensions, and by the well-defined, semi-elliptic dorsal area. Halamphora poianensis sp. nov. is most similar to H. gasseae but differs by the higher stria density, the clearly ventrally bent ends, and the strongly developed dorsal raphe ledge. Conclusions – This is a contribution to the knowledge of the genera Amphora and Halamphora in mountain springs in understudied geographic areas and inland-saline springs, the species communities of which are likely insufficiently explored.

Taxonomy and diversity of a little-known diatom genus Simonsenia (Bacillariaceae) in the marine littoral: novel taxa from the Yellow Sea and the Gulf of Mexico

Abstract: Background and aims – The diatom genus Simonsenia has been considered for some time a minor taxon, limited in its distribution to fresh and slightly brackish waters. Recently, knowledge of its diversity and geographic distribution has been enhanced with new species described from brackish-marine waters of the southern Iberian Peninsula and from inland freshwaters of South China, and here we report novel Simonsenia from fully marine waters. Methods – New isolates of Simonsenia species were obtained from marine waters, the littoral zone of the Korean Yellow Sea coast and the Gulf of Mexico in Corpus Christi (Texas), and documented in LM, SEM and with DNA sequence data (plastid-encoded rbcL and psbC). Phylogenetic trees of raphid diatoms were constructed to assess the relationships of the new species and of the genus as a whole. Key results and conclusions – Two novel species of Simonsenia (S. eileencoxiae and S. paucistriata) are described and a further putative taxon is characterized morphologically. The molecular phylogeny of the new Simonsenia species and previously sequenced species supports both the monophyly of the genus and its place within the Bacillariaceae. The Simonsenia clade clusters with clades composed of Cylindrotheca, Denticula and some Nitzschia spp. (including N. amphibia, N. frustulum, N. inconspicua). Hence Simonsenia is firmly positioned within the Bacillariaceae by molecular phylogenies, confirming its position within this group based on the possession of a canal raphe and its ultrastructure, and rejecting its classification within the Surirellaceae. Morphological data from the new Simonsenia species is typical for the genus, with a “simonsenioid” canal raphe type supported over the valve face with fenestral braces, alar canals connecting the canal raphe with the cell lumen, and the presence of fenestrae between the alar canals externally. Our results indicate unequivocally that the biogeography and the biodiversity of Simonsenia remain highly underestimated.

Conditional dormancy of Stipa lagascae (Poaceae) bulk harvested on seed increase plots in South Tunisia:: a reassessment and a surprise

Abstract: Background and aims – With the perspective to reseed degraded drylands, grass seeds are often stocked for several years. This common practice overlooks conditional dormancy and the necessity to preserve it. This paper reports on the germination ecology of Stipa lagascae Roem. & Schult., which is a circum-Mediterranean winter-growing bunch grass of high grazing value. However, the published record on its germination ecology is scarce and inconsistent.Methods – This record was reassessed through a series of germination trials in combination with dormancy breaking treatments on seeds that were mainly harvested on a seed increase plot in South-Tunisia.Key results –The surprise finding was that Stipa lagascae exhibits a particular kind of conditional dormancy for many months after harvest. Whereas dormant seeds barely germinate at 10°C in classical Petri dishes or on germination tables, they germinate massively (but not fully) when allowed full contact with a water-saturated substrate at 7–10°C in boxes. Dehulling provokes fast germination of near 100% of the seeds, thus showing that the substrate effect at low temperatures breaks most but not all dormancy in a particular seed lot. This remaining or residual dormancy is not conditional, as it can only be broken through dehulling. There are thus two distinct germination windows: a very broad one for non-dormant seed and a narrow one for conditionally dormant seed.Conclusions – A pattern is suggested whereby each seed lot evolves through a continuum from full over conditional to non-dormancy and finally mortality. However, only the state of conditional dormancy times germination optimally with regard to the start of the winter growing season in South-Tunisia. Its ecological significance should be interpreted in combination with its trypanocarpy. Reseeding for restoration purposes and to render grazing value to depleted drylands should thus use conditionally dormant seed.

Mine versus Wild : a plant conservation checklist of the rich Iron-Ore Ngovayang Massif Area (South Cameroon)

Abstract: Background and aims – The rapid expansion of human activities in South Cameroon, particularly mining in mountainous areas, threatens this region’s exceptional biodiversity. To comprehend the effects of land-use change on plant diversity and identify conservation priorities, we aim at providing a first comprehensive plant checklist of the Ngovayang Massif, focusing on the two richest plant families, Orchidaceae and Rubiaceae. Location – The Ngovayang Massif Area (NMA) is located in the South Region of Cameroon. It is covered by lowland and submontane rainforest (100 to 1110 m elevation). Methods – We compiled a dataset of 6116 georeferenced herbarium specimens, of which 2787 belong to Rubiaceae and Orchidaceae. We used rarefaction methods to explore sampling and diversity patterns, and investigated the altitudinal distribution of rare and/or threatened taxa. Key results – The NMA, which houses about 1500 vascular plant taxa, is the richest documented area for Rubiaceae in Atlantic Central Africa (ACA) and the fifth for Orchidaceae, with respectively 281 and 111 taxa. Among these taxa, 178 (45%) are endemic to ACA and 67 (17%) are considered globally threatened according to IUCN categories and criteria. We show that higher elevation areas (> 750 m), which are also the main areas targeted for mining, are the richest in endangered and/or rare species. Three new records for Cameroon are reported here. Conclusion – The NMA represents an Important Plant Area of Cameroon as confirmed by its exceptional plant diversity (> 20% of the total Flora of Cameroon), by the concentration of many threatened and/or restricted range species (10 taxa are strict endemics of the massif) as well as by the threat on rare habitats (i.e. the submontane vegetation above ~750 m elevation). A management plan involving in situ and ex situ conservation actions is urgently needed to reduce the potential threats of future mining activities.

Taxonomic novelties in Central African grasses (Poaceae), Paniceae 2

Abstract: Background and aims – Within the framework of the renewed production of the Flore d’Afrique centrale, the grasses are being studied to accomplish their treatment. Taxonomic novelties, or other information not deemed appropriate in a Flora, are published in a series of separate papers of which this is the second.Methods – Standard herbarium techniques have been applied to material from BR, BRLU, GENT, P and WAG. Some types were studied through the JSTOR Global Plant facility.Key results – Novelties are presented for the genera Anthephora, Cenchrus (incl. Pennisetum) and Setaria. Three new combinations are made. Lectotypes are designated for five names. Ten names are treated as new synonyms of accepted species names, with explanations of the new taxonomic concepts applied.

Ecological niche divergence associated with species and populations differentiation in Erythrophleum (Fabaceae, Caesalpinioideae)

Abstract: Background and aims – The isolation of populations inside forest refugia during past climate changes has widely been hypothesized as a major driver of tropical plant diversity. Environmental conditions can also influence patterns of diversity by driving divergent selection leading to local adaptation and, potentially, ecological speciation. Genetic and phylogenetic approaches are frequently used to study the diversification of African tree clades. However, the environmental space occupied by closely related species or intra-specific gene pools is barely quantified, though needed to properly test hypotheses on diversification processes.Methods – Using species distribution models, we determined the bioclimatic constraints on the distribution of closely related species and intra-specific gene pools. Our study model, Erythrophleum (Fabaceae – Caesalpinioideae), is a tropical tree genus widespread across Africa, and vastly investigated for genetics. Here, we combined the available phylogenetic data with information on niche divergence to explore the role of ecology into diversification at the species and gene pool levels.Key results – Ecological speciation through climate has probably played a key role in the evolution of the Erythrophleum species. The differential climatic niche of the species indicated adaptive divergence along rainfall gradients, that have probably been boosted by past climate fluctuations. At the gene pool level, past climate changes during the Pleistocene have shaped genetic diversity, though within Erythrophleum suaveolens, adaptive divergence also occurred.Conclusions – We believe that ecological speciation is a key mechanism of diversification for tropical African tree species, since such climatic niche partition exist among many other genera. Modelling the environmental niche of closely related taxa, and testing for niche differentiation, combined with divergence dates offered new insights on the process of diversification.

Distrionella coxiana, a new fragilarioid diatom species (Bacillariophyceae) from Tierra del Fuego, Patagonia, Argentina

Abstract: Fil: Casa, Valeria. Universidad Nacional de San Martin. Instituto de Investigacion e Ingenieria Ambiental. - Consejo Nacional de Investigaciones Cientificas y Tecnicas. Oficina de Coordinacion Administrativa Parque Centenario. Instituto de Investigacion e Ingenieria Ambiental; Argentina

Typification of the puzzling diatom species Neidium iridis (Neidiaceae)

Abstract: Background and aims – Confusion over the taxonomic identity of Neidium iridis (Ehrenb.) Cleve (= Navicula iridis Ehrenb.) has persisted for more than 130 years with identifications of valve shapes varying from elliptical to linear and sizes from 100 to 300 µm. This confusion can be linked to the rarity of the species and poor attention to the original line drawings of Ehrenberg. This study examines the type material of Navicula iridis and further uses additional material from North America to define the species Neidium iridis. Methods – Mica and material from Christian Gottfried Ehrenberg’s Collection were studied to examine Navicula iridis. Light and electron microscope techniques were used to document the variability of valve morphology of original material in comparison with other fossil and recent materials. Key results – Ehrenberg designated no nomenclatural type for Navicula iridis at the place of its first description, and until recently the original material was not studied. One freshwater extant locality was identified (New York, West Point) in the original 1843 publication, and in his notes and drawings. Examination of the micas and material from the type locality, showed that Navicula iridis was very rare. Two specimens were found that matched the line drawing presented by Ehrenberg. In addition, we examined Ehrenberg’s original material with SEM, as well as two other localities in North America and present LM and SEM documentation of additional valve forms. A further evaluation of the status of Neidium columnaris, Neidium maximum and an unknown taxon in relation to Neidium iridis is presented. Conclusions – The findings of this study elucidate the taxon Navicula iridis (= Neidium iridis) as described by Ehrenberg in 1843. This will assist in the identification of other large Neidium taxa which to date have been associated with Neidium iridis.

The cost of deer to trees: changes in resource allocation from growth-related traits and phenolic content to structural defence

Abstract: Background and aims-Plants may use various defence mechanisms to protect their tissues against deer browsing and the allocation of resources to defence may trade-off with plants' growth. In a context of increasing deer populations in European forests, understanding the resource allocation strategies of trees is critical to better assess their ability to face an increasing browsing pressure. The aim of this study was to determine how deer removal affects the resource allocation to both defensive and growth-related traits in field conditions for three tree species (Abies alba, Picea abies and Fagus sylvatica). Methods-We compared eight pairs of fenced-unfenced plots to contrast plots with and without browsing pressure. The pairs were set up in 2005 and 2014 to compare different fencing duration. We measured leaf and shoot traits related to the defence against herbivores (phenolic content, structural resistance, C:N ratio) and to the investment in plants' growth and productivity (specific leaf area and nutrient content). Key results-For the three species, the structural resistance of leaves and shoots was negatively correlated with SLA, nutrient content and phenolic content. For Abies alba, exclusion of deer decreased shoot structural resistance in favour of higher nutrient content, SLA and phenolic content. The fencing duration had no effect on the different measured traits. Conclusions-Our results support the assumption of a trade-off between structural defence and growth-related traits at the intraspecific scale for the three studied species. We also confirmed the hypothesis that exposure to deer browsing is involved in the resource allocation of woody species. For Abies alba, fencing led to a change in resource allocation from structural defence to growth-related traits and chemical defence.

Homothallism, morphology and phylogenetic position of a new species of Sellaphora (Bacillariophyta), S. pausariae

Abstract: Background and aims – The eutrophic Blackford Pond in Edinburgh has already provided the holotypes of six other Sellaphora species. A further undescribed species is present and requires description and characterization. Methods – Clones of the new species are characterized by light (LM) and scanning electron microscopy (SEM) and molecular phylogenetics (from a concatenated five-gene alignment of 18S rDNA, 28S rDNA, 23S rDNA, cox1 and rbcL, and a two-gene alignment of cox1 and rbcL). Key results – Sellaphora pausariae sp. nov. is named in honour of Dr Eileen Cox (‘pausaria’ = a lady coxswain). In molecular phylogenies, small-celled Sellaphora species (‘minima’ and ‘seminulum’ morphologies) branch off at the base of Sellaphora, though nodes are not well supported. Species and demes previously classified in either “Navicula pupula” or “Navicula bacillum” group into three very well supported clades (numbered 1–3). Although appearing in LM and SEM like a smaller, more delicate version of S. obesa, S. pausariae (clade 1) is not closely related to S. obesa (clade 2). Features of Sellaphora pausariae not confirmed previously in any Sellaphora but possibly widespread are: (a) hymenes with pores arranged in a regular scatter; (b) a stepped mantle near the poles; and (c) a ‘primodominant’ girdle comprising a wide band 1, a segmental band 2, and two extremely thin bands at the abvalvar end of the girdle. Sellaphora pausariae is homothallic; a deficiency of interclonal pairings in two-clone mixtures is interpreted as reflecting the tendency of cells to mate with their immediate neighbours. Conclusions – Morphologically, the new species can be differentiated from existing described species, though only problematically from some informally named demes. Molecularly, it is clearly characterized by the five genes sequenced. Girdle terminology needs expansion (e.g. to distinguish primodominant girdles from ‘graded’ ones, in which the bands gradually decrease in width and structural complexity from the valve outwards).

Polyphyly and homoplasic structures in rhizosolenioid diatom genera: a review

Abstract: Background and aims – Traditionally, extant rhizosolenioid diatom genera have been placed in a single family, the Rhizosoleniaceae. However, preliminary molecular data suggested that the family might be polyphyletic. Therefore, a literature review of the morphological, ultrastructural and molecular data of the rhizosolenioid genera was undertaken. Methods – In addition to the literature survey, the location of the rimoportula in a number of rhizosolenioid genera was investigated by breaking the valves and observing the fragments in the scanning electron microscope. Key results – The data provides strong support for the previous separation of Proboscia and Rhizosolenia at the family level (Probosciaceae vs. Rhizosoleniaceae), with the rimoportula being located at the tip of the proboscis in Proboscia, or with an internal labia at the base of the hollow tubular rimoportula (= spine or process) in Rhizosolenia and Pseudosolenia. Conclusions – The data suggests that a number of rhizosolenioid genera should be transferred to other families, and that gene sequences of two genera (Dactyliosolen and Neocalyptrella) are needed as their morphological features differ markedly from those of the Rhizosoleniceae s. str. (Rhizosolenia, Guinardia, Pseudosolenia).