Showing papers in "Trends in Ecology and Evolution in 2006"
TL;DR: It is asserted that community ecology should return to an emphasis on four themes that are tied together by a two-step process: how the fundamental niche is governed by functional traits within the context of abiotic environmental gradients; and how the interaction between traits and fundamental niches maps onto the realized niche in the context a biotic interaction milieu.
Abstract: There is considerable debate about whether community ecology will ever produce general principles. We suggest here that this can be achieved but that community ecology has lost its way by focusing on pairwise species interactions independent of the environment. We assert that community ecology should return to an emphasis on four themes that are tied together by a two-step process: how the fundamental niche is governed by functional traits within the context of abiotic environmental gradients; and how the interaction between traits and fundamental niches maps onto the realized niche in the context of a biotic interaction milieu. We suggest this approach can create a more quantitative and predictive science that can more readily address issues of global change.
3,715 citations
TL;DR: This work identifies where new techniques can help estimate the relative roles of the various selection mechanisms that might work together in the evolution of mating preferences and attractive traits, and in sperm-egg interactions.
Abstract: The past two decades have seen extensive growth of sexual selection research. Theoretical and empirical work has clarified many components of pre- and postcopulatory sexual selection, such as aggressive competition, mate choice, sperm utilization and sexual conflict. Genetic mechanisms of mate choice evolution have been less amenable to empirical testing, but molecular genetic analyses can now be used for incisive experimentation. Here, we highlight some of the currently debated areas in pre- and postcopulatory sexual selection. We identify where new techniques can help estimate the relative roles of the various selection mechanisms that might work together in the evolution of mating preferences and attractive traits, and in sperm‐egg interactions.
1,129 citations
TL;DR: It is argued that monitoring should not be viewed as a stand-alone activity, but instead as a component of a larger process of either conservation-oriented science or management, which would lead to substantial increases in the efficiency and usefulness of monitoring results in conservation.
Abstract: Human-mediated environmental changes have resulted in appropriate concern for the conservation of ecological systems and have led to the development of many ecological monitoring programs worldwide. Many programs that are identified with the purpose of 'surveillance' represent an inefficient use of conservation funds and effort. Here, we revisit the 1964 paper by Platt and argue that his recommendations about the conduct of science are equally relevant to the conduct of ecological monitoring programs. In particular, we argue that monitoring should not be viewed as a stand-alone activity, but instead as a component of a larger process of either conservation-oriented science or management. Corresponding changes in monitoring focus and design would lead to substantial increases in the efficiency and usefulness of monitoring results in conservation.
1,113 citations
TL;DR: It is argued that, in addition to altered habitat structure, three major processes contribute to the patterns of reduced species diversity and elevated abundance of many species in urban environments.
Abstract: Rapid urbanization has become an area of crucial concern in conservation owing to the radical changes in habitat structure and loss of species engendered by urban and suburban development. Here, we draw on recent mechanistic ecological studies to argue that, in addition to altered habitat structure, three major processes contribute to the patterns of reduced species diversity and elevated abundance of many species in urban environments. These activities, in turn, lead to changes in animal behavior, morphology and genetics, as well as in selection pressures on animals and plants. Thus, the key to understanding urban patterns is to balance studying processes at the individual level with an integrated examination of environmental forces at the ecosystem scale.
1,046 citations
TL;DR: This work focuses on what costs are, why they are important to consider, how they can be quantified and the benefits of their inclusion in priority setting, and considers prospects for integrating them into conservation planning.
Abstract: Recent studies that incorporate the spatial distributions of biological benefits and economic costs in conservation planning have shown that limited budgets can achieve substantially larger biological gains than when planning ignores costs. Despite concern from donors about the effectiveness of conservation interventions, these increases in efficiency from incorporating costs into planning have not yet been widely recognized. Here, we focus on what these costs are, why they are important to consider, how they can be quantified and the benefits of their inclusion in priority setting. The most recent work in the field has examined the degree to which dynamics and threat affect the outcomes of conservation planning. We assess how costs fit into this new framework and consider prospects for integrating them into conservation planning.
998 citations
TL;DR: The ecological and evolutionary processes that modulate the effects of invasive species over time are described, and it is argued that such processes are so widespread and important that ecologists should adopt a long-term perspective.
Abstract: We describe here the ecological and evolutionary processes that modulate the effects of invasive species over time, and argue that such processes are so widespread and important that ecologists should adopt a long-term perspective on the effects of invasive species. These processes (including evolution, shifts in species composition, accumulation of materials and interactions with abiotic variables) can increase, decrease, or qualitatively change the impacts of an invader through time. However, most studies of the effects of invasive species have been brief and lack a temporal context; 40% of recent studies did not even state the amount of time that had passed since the invasion. Ecologists need theory and empirical data to enable prediction, understanding and management of the acute and chronic effects of species invasions.
926 citations
TL;DR: The ecological functions of birds are reviewed, they are linked to ecosystem services and research priorities for understanding avian contributions to ecosystem functioning are outlined.
Abstract: Birds are one of the most diverse groups of ecosystem service providers, whose ecological functions range from creating soil to shaping primate behavior, Nevertheless, the impression that birds have little influence on ecological processes has been hard to change. Given the ongoing declines in avian functional groups, there is a pressing need to compare avian ecological functions to those of other taxa, to understand how these functions translate to ecosystem services and to estimate the ecological implications of bird declines. Here, I review the ecological functions of birds, link them to ecosystem services and outline research priorities for understanding avian contributions to ecosystem functioning.
925 citations
TL;DR: It is highlighted here how the Red List, in conjunction with the comprehensive data compiled to support it and in spite of several important limitations, has become an increasingly powerful tool for conservation planning, management, monitoring and decision making.
Abstract: The IUCN Red List of Threatened Species is the most comprehensive resource detailing the global conservation status of plants and animals. The 2004 edition represents a milestone in the four-decade long history of the Red List, including the first Global Amphibian Assessment and a near doubling in assessed species since 2000. Moreover, the Red List assessment process itself has developed substantially over the past decade, extending the value of the Red List far beyond the assignation of threat status. We highlight here how the Red List, in conjunction with the comprehensive data compiled to support it and in spite of several important limitations, has become an increasingly powerful tool for conservation planning, management, monitoring and decision making.
912 citations
TL;DR: By extending the list of plant traits and by developing better models for how traits influence species distributions and interactions, a strong foundation of basic ecology can be established, with many practical applications.
Abstract: The tissue traits and architectures of plant species are important for land-plant ecology in two ways. First, they control ecosystem processes and define habitat and resources for other taxa; thus, they are a high priority for understanding the ecosystem at a site. Second, knowledge of trait costs and benefits offers the most promising path to understanding how vegetation properties change along physical geography gradients. There exists an informal shortlist of plant traits that are thought to be most informative. Here, we summarize recent research on correlations and tradeoffs surrounding some traits that are prospects for the shortlist. By extending the list and by developing better models for how traits influence species distributions and interactions, a strong foundation of basic ecology can be established, with many practical applications.
869 citations
TL;DR: It is shown that there is evidence that parasites are important for biodiversity and production and a healthy system is considered to be one that is rich in parasite species.
Abstract: Historically, the role of parasites in ecosystem functioning has been considered trivial because a cursory examination reveals that their relative biomass is low compared with that of other trophic groups. However there is increasing evidence that parasite-mediated effects could be significant: they shape host population dynamics, alter interspecific competition, influence energy flow and appear to be important drivers of biodiversity. Indeed they influence a range of ecosystem functions and have a major effect on the structure of some food webs. Here, we consider the bottom-up and top-down processes of how parasitism influences ecosystem functioning and show that there is evidence that parasites are important for biodiversity and production; thus, we consider a healthy system to be one that is rich in parasite species.
777 citations
TL;DR: From an evolutionary perspective, recent investigations provide evidence that bioturbation had a key role in the evolution of metazoan life at the end of the Precambrian Era.
Abstract: Bioturbation refers to the biological reworking of soils and sediments, and its importance for soil processes and geomorphology was first realised by Charles Darwin, who devoted his last scientific book to the subject. Here, we review some new insights into the evolutionary and ecological role of bioturbation that would have probably amazed Darwin. In modern ecological theory, bioturbation is now recognised as an archetypal example of ‘ecosystem engineering’, modifying geochemical gradients, redistributing food resources, viruses, bacteria, resting stages and eggs. From an evolutionary perspective, recent investigations provide evidence that bioturbation had a key role in the evolution of metazoan life at the end of the Precambrian Era.
TL;DR: The water purification function of wetlands at the site and catchment scale is discussed and ways in which these disadvantages could be overcome are suggested.
Abstract: Water quality in many stream catchments and river basins is severely impacted by nutrient enrichment as a result of agriculture. Water-resource managers worldwide are considering the potential role of riparian zones and floodplain wetlands in improving stream-water quality, as there is evidence at the site scale that such wetlands are efficient at removing nutrients from through-flowing water. However, recent studies have highlighted disadvantages of such use of wetlands, including emissions of greenhouse gases and losses of biodiversity that result from prolonged nutrient loading. Here, we discuss the water purification function of wetlands at the site and catchment scale and suggest ways in which these disadvantages could be overcome.
TL;DR: The preliminary picture suggests that invasive species frequently cause profound disruptions to plant reproductive mutualisms, and the implications for global biodiversity are difficult to predict.
Abstract: Invasive alien species affect the composition and functioning of invaded ecosystems in many ways, altering ecological interactions that have arisen over evolutionary timescales. Specifically, disruptions to pollination and seed-dispersal mutualistic interactions are often documented, although the profound implications of such impacts are not widely recognized. Such disruptions can occur via the introduction of alien pollinators, seed dispersers, herbivores, predators or plants, and we define here the many potential outcomes of each situation. The frequency and circumstances under which each category of mechanisms operates are also poorly known. Most evidence is from population-level studies, and the implications for global biodiversity are difficult to predict. Further insights are needed on the degree of resilience in interaction networks, but the preliminary picture suggests that invasive species frequently cause profound disruptions to plant reproductive mutualisms.
TL;DR: It is suggested here that existing models, developed primarily in unmanaged and agricultural ecosystems, work poorly in urban ecosystems because they do not include human biogeochemical controls such as impervious surface proliferation, engineered aqueous flow paths, landscaping choices, and human demographic trends.
Abstract: Most of the global human population lives in urban areas where biogeochemical cycles are controlled by complex interactions between society and the environment. Urban ecology is an emerging discipline that seeks to understand these interactions, and one of the grand challenges for urban ecologists is to develop models that encompass the myriad influences of people on biogeochemistry. We suggest here that existing models, developed primarily in unmanaged and agricultural ecosystems, work poorly in urban ecosystems because they do not include human biogeochemical controls such as impervious surface proliferation, engineered aqueous flow paths, landscaping choices, and human demographic trends. Incorporating these human controls into biogeochemical models will advance urban ecology and will require enhanced collaborations with engineers and social scientists.
TL;DR: Current knowledge of microbial diversity at local and global scales is discussed, focusing on three spatial patterns: the distance-decay relationship, the taxa-area relationship, and the local:global taxa richness ratio.
Abstract: A central goal in ecology is to understand the spatial scaling of biodiversity. Patterns in the spatial distribution of organisms provide important clues about the underlying mechanisms that structure ecological communities and are central to setting conservation priorities. Although microorganisms comprise much of Earth’s biodiversity, little is known about their biodiversity scaling relationships relative to that for plants and animals. Here, we discuss current knowledge of microbial diversity at local and global scales. We focus on three spatial patterns: the distance–decay relationship (how community composition changes with geographic distance), the taxa–area relationship, and the local: global taxa richness ratio. Recent empirical analyses of these patterns for microorganisms suggest that there are biodiversity scaling rules common to all forms of life.
TL;DR: Whether transoceanic and transcontinental dust events inject a large pulse of microorganisms and pollen into the atmosphere and could therefore have a role in transporting pathogens or expanding the biogeographical range of some organisms by facilitating long-distance dispersal events is discussed.
Abstract: Desert winds aerosolize several billion tons of soil-derived dust each year, including concentrated seasonal pulses from Africa and Asia. These transoceanic and transcontinental dust events inject a large pulse of microorganisms and pollen into the atmosphere and could therefore have a role in transporting pathogens or expanding the biogeographical range of some organisms by facilitating long-distance dispersal events. As we discuss here, whether such dispersal events are occurring is only now beginning to be investigated. Huge dust events create an atmospheric bridge over land and sea, and the microbiota contained within them could impact downwind ecosystems. Such dispersal is of interest because of the possible health effects of allergens and pathogens that might be carried with the dust.
TL;DR: The increasing evidence that half of this carbon release is from living plant roots, their mycorrhizal fungi and other root-associated microbes, and that this release is driven directly by recent photosynthesis is discussed.
Abstract: Soil respiration almost balances carbon fixation by terrestrial photosynthesis and exceeds all anthropogenic carbon emissions by an order of magnitude, yet we lack precise knowledge of the sources of, and controls upon, the release of carbon dioxide from soils. Here, we discuss the increasing evidence that half of this carbon release is from living plant roots, their mycorrhizal fungi and other root-associated microbes, and that this release is driven directly by recent photosynthesis. The new studies challenge the widespread view that soil activity is dominated by decomposer organisms using older detrital material and that root litter inputs equal those of aboveground litter. The new observations emphasize the physiological continuity and dynamic interdependence of the plant-microbe-soil system and highlight the need for closer cooperation between plant and soil scientists.
TL;DR: It is argued here that the unique history of each community and intrinsic temporal dynamics also influence the structure of human intestinal communities.
Abstract: Complex microbial ecosystems occupy the skin, mucosa and alimentary tract of all mammals, including humans. Recent advances have highlighted the tremendous diversity of these microbial communities and their importance to host physiology, but questions remain about the ecological processes that establish and maintain the microbiota throughout life. The prevailing view, that the gastrointestinal microbiota of adult humans is a climax community comprised of the superior competitors for a stable set of niches, does not account for all of the experimental data. We argue here that the unique history of each community and intrinsic temporal dynamics also influence the structure of human intestinal communities.
TL;DR: Recent studies that are taking biogeographical ecology beyond previously held assumptions by observing populations in the field across large parts of the species range provide a promising approach for teasing out ecological and evolutionary mechanisms of the patterns and processes underlying species ranges.
Abstract: The assumption that species are most abundant in the center of their range and decline in abundance toward the range edges has a long history in the ecological literature. This assumption has driven basic and applied ecological and evolutionary hypotheses about the causes of species range limits and their responses to climate change. Here, we review recent studies that are taking biogeographical ecology beyond previously held assumptions by observing populations in the field across large parts of the species range. When these studies combine data on abundance, demographics, organismal physiology, genetics and physical factors, they provide a promising approach for teasing out ecological and evolutionary mechanisms of the patterns and processes underlying species ranges.
TL;DR: Key short-, medium- and long-term recording capacities of stable isotopes that are currently being applied to ecological questions are reviewed.
Abstract: Analyses of the natural variation in stable isotopes of components of ecological systems have provided new insights into how these systems function across paleoecological to modern timescales and across a wide range of spatial scales. Isotope abundances of the molecules in biological materials and geochemical profiles are viewed as recorders that can be used to reconstruct ecological processes or to trace ecological activities. Here, we review key short-, medium- and long-term recording capacities of stable isotopes that are currently being applied to ecological questions. The melding of advances in genetics, biochemical profiling and spatial analysis with those in isotope analyses and modeling sophistication opens the door to an exciting future in ecological research.
TL;DR: This work considers how migration (as a demographic factor), as well as ecological and evolutionary changes, affect invasion success, and proposes three main theoretical scenarios that depend on how these factors generate the match between an invader and its new environment.
Abstract: Studies of bioinvasions have revealed various strategies of invasion, depending on the ecosystem invaded and the alien species concerned. Here, we consider how migration (as a demographic factor), as well as ecological and evolutionary changes, affect invasion success. We propose three main theoretical scenarios that depend on how these factors generate the match between an invader and its new environment. Our framework highlights the features that are common to, or differ among, observed invasion cases, and clarifies some general trends that have been previously highlighted in bioinvasions. We also suggest some new directions of research, such as the assessment of the time sequence of demographic, genetic and environmental changes, using detailed temporal surveys.
TL;DR: It is argued here that this dichotomy reflects widespread naiveté toward introduced predators among freshwater prey, thereby producing a systemic vulnerability to introduced predators that is not seen in continental terrestrial or marine systems.
Abstract: There is much evidence that suggests that freshwater systems are more sensitive to introduced predators than are terrestrial or marine systems. We argue here that this dichotomy reflects widespread naivete toward introduced predators among freshwater prey. Continental terrestrial animals are seldom naive toward novel predators owing to the homogenizing effects of historical biotic interchanges. Comparable biotic interchanges might have also precluded prey naivete in most marine systems. By contrast, freshwater systems exhibit persistent large- and small-scale heterogeneity in predation regimes. This heterogeneity promotes naivete at multiple spatial scales in freshwater prey, thereby producing a systemic vulnerability to introduced predators that is not seen in continental terrestrial or marine systems.
TL;DR: The new evidence suggests that climate-driven extinctions and range retractions are already widespread.
Abstract: Until recently, published evidence for the responses of species to climate change had revealed more examples of species expanding than retracting their distributions. However, recent papers on butterflies and frogs now show that population-level and species-level extinctions are occurring. The relative lack of previous information about range retractions and extinctions appears to stem, at least partly, from a failure to survey the distributions of species at sufficiently fine resolution to detect declines, and from a failure to attribute such declines to climate change. The new evidence suggests that climate-driven extinctions and range retractions are already widespread.
TL;DR: Recent work is discussed showing how, under realistic ecological conditions, mycorrhizal networks can affect the physiology and ecology of plants by facilitating interplant nutrient exchange, acting as inoculum reservoirs for seedlings and altering plant competitive abilities.
Abstract: Mycorrhizal associations, by which most land plants receive mineral nutrition, are diffuse and often non-specific. A common mycorrhizal network is formed when fungal mycelia colonize and link together the roots of two or more plants, sometimes of different species. Here, we discuss recent work showing how, under realistic ecological conditions, such networks can affect the physiology and ecology of plants by facilitating interplant nutrient exchange, acting as inoculum reservoirs for seedlings and altering plant competitive abilities. Although mechanisms for their evolutionary emergence remain unclear, investigating mycorrhizal networks profoundly modifies our understanding of plant communities.
TL;DR: A conceptual framework is presented that shows how consideration of ecosystem engineers can be used to assess the likelihood of restoration of a system to a desired state, the type of changes necessary for successful restoration and how restoration efforts can be most effectively partitioned between direct human intervention and natural ecosystem engineers.
Abstract: Ecosystem engineers affect other organisms by creating, modifying, maintaining or destroying habitats. Despite widespread recognition of these often important effects, the ecosystem engineering concept has yet to be widely used in ecological applications. Here, we present a conceptual framework that shows how consideration of ecosystem engineers can be used to assess the likelihood of restoration of a system to a desired state, the type of changes necessary for successful restoration and how restoration efforts can be most effectively partitioned between direct human intervention and natural ecosystem engineers.
TL;DR: The extensive adaptive radiation in echolocation call design is shaped largely by ecology, showing how perceptual challenges imposed by the environment can often override phylogenetic constraints.
Abstract: Recent molecular phylogenies have changed our perspective on the evolution of echolocation in bats. These phylogenies suggest that certain bats with sophisticated echolocation (e.g. horseshoe bats) share a common ancestry with non-echolocating bats (e.g. Old World fruit bats). One interpretation of these trees presumes that laryngeal echolocation (calls produced in the larynx) probably evolved in the ancestor of all extant bats. Echolocation might have subsequently been lost in Old World fruit bats, only to evolve secondarily (by tongue clicking) in this family. Remarkable acoustic features such as Doppler shift compensation, whispering echolocation and nasal emission of sound each show multiple convergent origins in bats. The extensive adaptive radiation in echolocation call design is shaped largely by ecology, showing how perceptual challenges imposed by the environment can often override phylogenetic constraints.
TL;DR: It is suggested that, rather than attributing behaviour to explanatory categories, researchers would often be better advised to partition variance in behaviour to alternative sources.
Abstract: Recent interest in animal cultures has been fuelled by high-profile reports of intra- and interpopulation differences in the behavioural repertoires of primates and cetaceans, consistent with the existence of socially learned traditions. Several studies have mapped spatial differences in behaviour, revealing a mosaic of behavioural phenotypes within species. The dominant current approach attempts to determine whether this is cultural variation by excluding asocial learning, ecological or genetic factors. However, claims of animal cultures remain controversial because such comparisons are subject to weaknesses; thus, new approaches to isolating the influence of culture on behaviour are required. Here we suggest that, rather than attributing behaviour to explanatory categories, researchers would often be better advised to partition variance in behaviour to alternative sources.
TL;DR: This work discusses how understanding the demographic consequences of environmental variation will have applications for anticipating changes in populations resulting from anthropogenic activities that affect the variance in vital rates and highlights new tools for anticipating the magnitude and temporal patterning of environmental variability.
Abstract: Recent advances in stochastic demography provide unique insights into the probable effects of increasing environmental variability on population dynamics, and these insights can be substantially different compared with those from deterministic models. Stochastic variation in structured population models influences estimates of population growth rate, persistence and resilience, which ultimately can alter community composition, species interactions, distributions and harvesting. Here, we discuss how understanding these demographic consequences of environmental variation will have applications for anticipating changes in populations resulting from anthropogenic activities that affect the variance in vital rates. We also highlight new tools for anticipating the consequences of the magnitude and temporal patterning of environmental variability.
TL;DR: Evidence that migration rates of two tree species at the end of the last glacial were much slower than was previously thought provides an important insight for climate-change impacts studies and suggests that the ability of species to track future climate change is limited.
Abstract: In a recent paper, McLachlan et al. presented evidence that migration rates of two tree species at the end of the last glacial ( c. 10–20 thousand years ago) were much slower than was previously thought. These results provide an important insight for climate-change impacts studies and suggest that the ability of species to track future climate change is limited. However, the detection of late-glacial refugia close to modern range limits also implies that some of our most catastrophic projections might be overstated.
TL;DR: It is argued that neutral theory is also a stochastic theory, a sampling theory and a dispersal-limited theory, and these important additional features should be retained in future theoretical developments of community ecology.
Abstract: Hubbell's neutral theory of biodiversity has challenged the classic niche-based view of ecological community structure. Although there have been many attempts to falsify Hubbell's theory, we argue that falsification should not lead to rejection, because there is more to the theory than neutrality alone. Much of the criticism has focused on the neutrality assumption without full appreciation of other relevant aspects of the theory. Here, we emphasize that neutral theory is also a stochastic theory, a sampling theory and a dispersal-limited theory. These important additional features should be retained in future theoretical developments of community ecology.