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A comparison of multivariate analysis techniques and variable selection strategies in a laser-induced breakdown spectroscopy bacterial classification

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TLDR
The partial least squares discriminant analysis was more effective at distinguishing between highly similar spectra from closely related bacterial genera and may be the preferred multivariate technique in future species-level or strain-level classifications.
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This article is published in Spectrochimica Acta Part B: Atomic Spectroscopy.The article was published on 2013-09-01 and is currently open access. It has received 38 citations till now. The article focuses on the topics: Discriminant function analysis & Partial least squares regression.

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Citations
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Journal ArticleDOI

Towards Automated Classification of Zooplankton Using Combination of Laser Spectral Techniques and Advanced Chemometrics

TL;DR: In this article , the performance of several chemometric techniques (principal component analysis (PCA), non-negative matrix factorisation (NMF), and common dimensions and specific weights analysis (CCSWA of ComDim)) for the unsupervised classification of zooplankton species based on their spectra.
Proceedings ArticleDOI

Low cost laser induced breakdown spectroscopy technique for detection of microorganisms

TL;DR: The results indicate the feasibility of porting this technique onto a PDMS (Polydimethylsiloxane) or paper based microfluidic point of care device which can eliminate the complex sample preparation steps required currently.
OtherDOI

Marine Biofouling Analysis by<scp>Laser‐Induced</scp>Breakdown Spectroscopy

Greg Garrard
TL;DR: In this article , a laboratory-scale laser-induced breakdown spectroscopy (LIBS) technique was used to analyze biofouling samples temporally and spatially in the tropical Indian Ocean at a distance of 480m from the shoreline.
Journal ArticleDOI

Detection and Classification of Bacterial Cells After Centrifugation and Filtration of Liquid Specimens Using Laser-Induced Breakdown Spectroscopy

TL;DR: Five species of bacteria including Escherichia coli, Mycobacterium smegmatis, Pseudomonas aeruginosa, Staphylococcus epidermidis, and Enterobacter cloacae were deposited from suspensions of various titers onto disposable nitrocellulose filter media for analysis by laser-induced breakdown spectroscopy (LIBS).
OtherDOI

<scp>Laser‐Induced</scp> Breakdown Spectroscopy for the Identification of Bacterial Pathogens

TL;DR: In this article , the authors provided a critical overview of the diverse progress and developments in laser-induced breakdown spectroscopy (LIBS) applications in identifying bacterial pathogens, and used principal component analysis (PCA) to discriminate bacterial spores, molds, and pollens.
References
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Journal ArticleDOI

Multivariate Data Analysis

TL;DR: In this paper, a six-step framework for organizing and discussing multivariate data analysis techniques with flowcharts for each is presented, focusing on the use of each technique, rather than its mathematical derivation.
Book

Partial Least Squares for Discrimination

TL;DR: Partial least squares (PLS) was not originally designed as a tool for statistical discrimination as discussed by the authors, but applied scientists routinely use PLS for classification and there is substantial empirical evidence to suggest that it performs well in that role.
Journal ArticleDOI

Laser-induced breakdown spectroscopy for detection of explosives residues: a review of recent advances, challenges, and future prospects

TL;DR: This review discusses the application of laser-induced breakdown spectroscopy (LIBS) to the problem of explosive residue detection and demonstrates the tremendous potential of LIBS for real-time detection of explosives residues at standoff distances.
Journal ArticleDOI

Laser-induced breakdown spectroscopy of bacterial spores, molds, pollens, and protein: initial studies of discrimination potential.

TL;DR: LIBS data from the individual laser shots were analyzed by principal-components analysis and were found to contain adequate information to afford discrimination among the different biomaterials.
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Q1. What are the contributions in "A comparison of multivariate analysis techniques and variable selection strategies in a laser-induced breakdown spectroscopy bacterial classification" ?

In this paper, the authors compared the use of three different down-selected variable models consisting of emission intensities, the sum of observed ∼4 intensities from the elements P, Ca, Mg, Na, C, and complex ratios of those intensities. 

Such a confirmation will need to be investigated in future work.