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A comparison of multivariate analysis techniques and variable selection strategies in a laser-induced breakdown spectroscopy bacterial classification

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TLDR
The partial least squares discriminant analysis was more effective at distinguishing between highly similar spectra from closely related bacterial genera and may be the preferred multivariate technique in future species-level or strain-level classifications.
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This article is published in Spectrochimica Acta Part B: Atomic Spectroscopy.The article was published on 2013-09-01 and is currently open access. It has received 38 citations till now. The article focuses on the topics: Discriminant function analysis & Partial least squares regression.

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Citations
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Journal ArticleDOI

Application of multivariate statistical techniques in microbial ecology.

TL;DR: This review describes and compares the most widely used multivariate statistical techniques including exploratory, interpretive and discriminatory procedures, and presents examples of how these approaches have been utilized in recent studies to provide insight into the ecology of the microbial world.
Journal ArticleDOI

Sample treatment and preparation for laser-induced breakdown spectroscopy

TL;DR: In this paper, the authors highlight the work of many LIBS researchers who have developed, adapted, and improved upon sample preparation techniques for various specimen types in order to improve the quality of the analytical data that LIBS can produce in a large number of research domains.
Journal ArticleDOI

On the utilization of principal component analysis in laser-induced breakdown spectroscopy data analysis, a review

TL;DR: This work critically assess and elaborate on the approaches to utilize PCA in LIBS data processing, and derives some implications and suggests advice in data preprocessing, visualization, dimensionality reduction, model building, classification, quantification and non-conventional multivariate mapping.
Journal ArticleDOI

A critical review of recent progress in analytical laser-induced breakdown spectroscopy

TL;DR: This review attempts to give a critical overview of the diverse progress of the field, focusing on the results of the last five years, of laser-induced breakdown spectroscopy.
Journal ArticleDOI

Laser-induced breakdown spectroscopy for human and animal health: A review

TL;DR: Laser-Induced Breakdown Spectroscopy is in a stage of great vitality as an analytical technique, with new research emerging trends likely to play an important role in the future development of the technique as well as in its penetration in the medical field.
References
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Journal ArticleDOI

Detection of bacteria by time-resolved laser-induced breakdown spectroscopy

TL;DR: Time-resolved laser-induced breakdown spectroscopy (TRELIBS) exhibits a good ability to differentiate among all these species, whatever the culture medium, the species or the strain, and is expected to be a good candidate for a sensor of hazards either on surfaces or in ambient air.
Journal ArticleDOI

Laser-induced breakdown spectroscopy detection and classification of biological aerosols.

TL;DR: In this paper, a spectrally broadband laser-induced breakdown spectroscopy (LIBS) system was used for laboratory measurements on some common biological agent simulants, which were compared to those of common, naturally occurring biological aerosol components (pollen and fungal spores) to determine the potential of LIBS for discriminating biological agents from natural background aerosols.
Proceedings Article

Laser induced breakdown spectroscopy for the detection and classification of biological aerosols

John D. Hybl
TL;DR: A principal components analysis illustrates that linear combinations of the detected atomic lines, which are present in different ratios in each of the samples tested, can be used to discriminate biological agent simulants from other biological matter.
Journal ArticleDOI

Standoff detection of chemical and biological threats using laser-induced breakdown spectroscopy.

TL;DR: The preliminary results indicate that while LIBS is able to discriminate biomaterials with similar elemental compositions at standoff distances based on differences in key intensity ratios, further work is needed to reduce the number of false positives/negatives by refining the PLS-DA model to include a sufficient range of material classes and carefully selecting a detection threshold.
Journal ArticleDOI

Multivariate analysis of standoff laser-induced breakdown spectroscopy spectra for classification of explosive-containing residues

TL;DR: This work investigates the use of partial least squares discriminant analysis (PLS-DA) for explosives detection and extends the study of PLS-DA to more complex sample types, including binary mixtures, different types of explosives, and samples not included in the model.
Related Papers (5)
Frequently Asked Questions (2)
Q1. What are the contributions in "A comparison of multivariate analysis techniques and variable selection strategies in a laser-induced breakdown spectroscopy bacterial classification" ?

In this paper, the authors compared the use of three different down-selected variable models consisting of emission intensities, the sum of observed ∼4 intensities from the elements P, Ca, Mg, Na, C, and complex ratios of those intensities. 

Such a confirmation will need to be investigated in future work.