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A comparison of multivariate analysis techniques and variable selection strategies in a laser-induced breakdown spectroscopy bacterial classification

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TLDR
The partial least squares discriminant analysis was more effective at distinguishing between highly similar spectra from closely related bacterial genera and may be the preferred multivariate technique in future species-level or strain-level classifications.
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This article is published in Spectrochimica Acta Part B: Atomic Spectroscopy.The article was published on 2013-09-01 and is currently open access. It has received 38 citations till now. The article focuses on the topics: Discriminant function analysis & Partial least squares regression.

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Journal ArticleDOI

Application of multivariate statistical techniques in microbial ecology.

TL;DR: This review describes and compares the most widely used multivariate statistical techniques including exploratory, interpretive and discriminatory procedures, and presents examples of how these approaches have been utilized in recent studies to provide insight into the ecology of the microbial world.
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Sample treatment and preparation for laser-induced breakdown spectroscopy

TL;DR: In this paper, the authors highlight the work of many LIBS researchers who have developed, adapted, and improved upon sample preparation techniques for various specimen types in order to improve the quality of the analytical data that LIBS can produce in a large number of research domains.
Journal ArticleDOI

On the utilization of principal component analysis in laser-induced breakdown spectroscopy data analysis, a review

TL;DR: This work critically assess and elaborate on the approaches to utilize PCA in LIBS data processing, and derives some implications and suggests advice in data preprocessing, visualization, dimensionality reduction, model building, classification, quantification and non-conventional multivariate mapping.
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A critical review of recent progress in analytical laser-induced breakdown spectroscopy

TL;DR: This review attempts to give a critical overview of the diverse progress of the field, focusing on the results of the last five years, of laser-induced breakdown spectroscopy.
Journal ArticleDOI

Laser-induced breakdown spectroscopy for human and animal health: A review

TL;DR: Laser-Induced Breakdown Spectroscopy is in a stage of great vitality as an analytical technique, with new research emerging trends likely to play an important role in the future development of the technique as well as in its penetration in the medical field.
References
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Journal ArticleDOI

Influence of variable selection on partial least squares discriminant analysis models for explosive residue classification

TL;DR: In this paper, the importance of variable selection for maximizing residue discrimination with partial least squares discriminant analysis (PLS-DA) was demonstrated using a series of thirteen organic materials that includes novel high-nitrogen energetic materials, conventional organic military explosives, and benign organic materials.
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Towards the clinical application of laser-induced breakdown spectroscopy for rapid pathogen diagnosis: the effect of mixed cultures and sample dilution on bacterial identification

TL;DR: In this article, the effect of the presence of a second bacterial species in the ablated specimen had on the identification of the majority species was investigated and a linear dependence of the total spectral power as a function of cell number was determined.
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A membrane basis for bacterial identification and discrimination using laser-induced breakdown spectroscopy

TL;DR: It is demonstrated that the source of emission from Ca and Mg atoms observed in LIBS plasmas from bacteria is at least partially located at the outer membrane by intentionally altering membrane biochemistry and correlating these changes with the observed changes in the LIBS spectra.
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Use of laser-induced breakdown spectroscopy for the differentiation of pathogens and viruses on substrates

TL;DR: This is the first study in which laser-induced breakdown spectroscopy has been used to differentiate virus samples, and it was found possible to differentiate among all samples.
Journal ArticleDOI

Development of a LIBS assay for the detection of Salmonella enterica serovar Typhimurium from food

TL;DR: This study focuses on the identification of S. enterica serovar Typhimurium, a Gram-negative foodborne pathogen, in various liquids such as milk, chicken broth, and brain heart infusion due to the infection being most prevalent in raw meat and dairy products.
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Frequently Asked Questions (2)
Q1. What are the contributions in "A comparison of multivariate analysis techniques and variable selection strategies in a laser-induced breakdown spectroscopy bacterial classification" ?

In this paper, the authors compared the use of three different down-selected variable models consisting of emission intensities, the sum of observed ∼4 intensities from the elements P, Ca, Mg, Na, C, and complex ratios of those intensities. 

Such a confirmation will need to be investigated in future work.