A flexible and accurate genotype imputation method for the next generation of genome-wide association studies.
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7,038 citations
Cites methods from "A flexible and accurate genotype im..."
...To support easier interoperation with newer software like BEAGLE 4 [2], IMPUTE2 [3], GATK [4], VCFtools [5], BCFtools [6], and GCTA [7], features such as the import/export of VCF and Oxford-format files and an efficient crossplatform genomic relationship matrix (GRM) calculator have been introduced....
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...To support easier interoperation with newer software, for example BEAGLE 4 [2], IMPUTE2 [3], GATK [4], VCFtools [5], BCFtools [6] and GCTA [7], features such as the import/export of VCF andOxford-format files and an efficient cross-platform genomic relationship matrix (GRM) calculator have been introduced....
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4,949 citations
Cites methods from "A flexible and accurate genotype im..."
...To reuse the rich methods developed for genotyping data, the 1000 Genomes Project proposes to impute genotypes utilizing LD across loci (Li et al., 2009b; Browning and Yu, 2009; Howie et al., 2009; Li et al., 2010a)....
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References
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"A flexible and accurate genotype im..." refers background in this paper
...This approach to studying disease has succeeded largely because of improved catalogues of human genetic variation [4] and advances in genotyping technology, but it has also been bolstered by the rise of genotype imputation methods [5–8], which have allowed researchers to tease increasingly subtle signals out of large and complex genetic datasets [9,10]....
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2,895 citations