A haplotype map of genomic variations and genome-wide association studies of agronomic traits in foxtail millet (Setaria italica)
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Cites background from "A haplotype map of genomic variatio..."
...…to analyse variation in this wild species and to map introgressions of genetic material from this wild relative which has been extensively used as a source of alleles contributing to abiotic and biotic stress tolerance in wheat (Jones et al., 2013; Periyannan et al., 2013; Sohail et al., 2011)....
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Cites background or methods from "A haplotype map of genomic variatio..."
...Genetic mapping and comparative genome analysis found that the Shattering 1 gene for seed shattering was under parallel selection during sorghum, foxtail millet, rice, and maize domestication (50, 64)....
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...A total of 916 diverse foxtail millet varieties, including both traditional landraces and modern cultivars, were genotyped through whole-genome low-coverage sequencing (50)....
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...For this, a k nearest neighbor–based algorithm that explores local haplotype similarity to infer the missing calls was developed, and applications in both rice and foxtail millet showed high accuracy (41, 50)....
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...GWAS have now been carried out successfully in many crops, including maize, rice, sorghum, and foxtail millet (41, 42, 50, 58, 61, 76, 109, 136)....
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Additional excerpts
...maize [12, 13], and foxtail millet [14]....
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References
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