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Journal ArticleDOI

A marine microbial consortium apparently mediating anaerobic oxidation of methane

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TLDR
In this article, the authors provide microscopic evidence for a structured consortium of archaea and sulphate-reducing bacteria, which are identified by fluorescence in situ hybridization using specific 16S rRNA-targeted oligonucleotide probes.
Abstract
A large fraction of globally produced methane is converted to CO2 by anaerobic oxidation in marine sediments. Strong geochemical evidence for net methane consumption in anoxic sediments is based on methane profiles, radiotracer experiments and stable carbon isotope data. But the elusive microorganisms mediating this reaction have not yet been isolated, and the pathway of anaerobic oxidation of methane is insufficiently understood. Recent data suggest that certain archaea reverse the process of methanogenesis by interaction with sulphate-reducing bacteria. Here we provide microscopic evidence for a structured consortium of archaea and sulphate-reducing bacteria, which we identified by fluorescence in situ hybridization using specific 16S rRNA-targeted oligonucleotide probes. In this example of a structured archaeal-bacterial symbiosis, the archaea grow in dense aggregates of about 100 cells and are surrounded by sulphate-reducing bacteria. These aggregates were abundant in gas-hydrate-rich sediments with extremely high rates of methane-based sulphate reduction, and apparently mediate anaerobic oxidation of methane.

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The Biomarker Guide

TL;DR: The second edition of The Biomarker Guide as mentioned in this paper provides a comprehensive account of the role that biomarker technology plays both in petroleum exploration and in understanding Earth history and processes.
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The snowball Earth hypothesis: testing the limits of global change

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References
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Journal ArticleDOI

Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations.

TL;DR: Fluorescent oligonucleotide hybridization probes were used to label bacterial cells for analysis by flow cytometry and the intensity of fluorescence was increased additively by the combined use of two or three fluorescent probes complementary to different regions of the same 16S rRNA.
Journal ArticleDOI

Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology.

TL;DR: Fluorescent-dye-conjugated oligonucleotides were used to classify 14 Fibrobacter strains by fluorescence microscopy and the direct detection of F. intestinalis in mouse cecum samples demonstrated the application of this technique to the characterization of complex natural samples.
Journal ArticleDOI

Methane-consuming archaebacteria in marine sediments

TL;DR: Studies of sediments related to a decomposing methane hydrate provide strong evidence that methane is being consumed by archaebacteria that are phylogenetically distinct from known methanogens.
Journal ArticleDOI

Phylogenetic probes for analyzing abundance and spatial organization of nitrifying bacteria.

TL;DR: Volume 62, no. 6, p. 2157, Table 1: the sequence for probe Nso1225, 5(prm1)-CGCGATTGTATTACGTGTGTGA-3( prm1), should read 5(PRm1-CGCCATTGTattACGT GTGA- 3(prM1).
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