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Journal ArticleDOI

A mathematical model-building procedure for proteins

01 Aug 1966-Acta Crystallographica (International Union of Crystallography (IUCr))-Vol. 21, Iss: 2, pp 253-266
TL;DR: In this article, the existence of the tautomeric form (I) of pyridaz-3-thione not only in solution but in the solid state as well.
Abstract: to be 0.112 A shorter than the sum of the Pauling covalent radii for carbon and sulphur. This bond must therefore possess considerable double-bond character. Cucka (1963) also puts forward an argument for the existence of a similar ring system in that his calculations support the evidence for hydrogen atoms attached to C(2), C(3), C(4) and N(2). Thus it appears, from these two X-ray investigations and Hedgley's observations, that there is now sufficient evidence to confirm the existence of the tautomeric form (I) of pyridaz-3-thione not only in solution but in the solid state as well.
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Journal ArticleDOI
TL;DR: The Protein Data Bank is a computer-based archival file for macromolecular structures that stores in a uniform format atomic co-ordinates and partial bond connectivities, as derived from crystallographic studies.

7,983 citations

Journal ArticleDOI
TL;DR: The Protein Data Bank is a computer-based archival file for macromolecular structures that stores in a uniform format atomic co-ordinates and partial bond connectivities, as derived from crystallographic studies.

2,453 citations

Journal ArticleDOI
TL;DR: The working principles of important steps in processing rotation data are described as employed by the program XDS.
Abstract: Important steps in the processing of rotation data are described that are common to most software packages. These programs differ in the details and in the methods implemented to carry out the tasks. Here, the working principles underlying the data-reduction package XDS are explained, including the new features of automatic determination of spot size and reflecting range, recognition and assignment of crystal sym­metry and a highly efficient algorithm for the determination of correction/scaling factors.

2,096 citations


Cites methods from "A mathematical model-building proce..."

  • ...To take care of these difficulties, the system of equations is rescaled to yield unit diagonal elements for the normal matrix and the correction vector s is filtered by projection into a subspace defined by the eigenvectors of the normal matrix with sufficiently large eigenvalues (Diamond, 1966)....

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Journal ArticleDOI
TL;DR: A computer program is described for calculating the environment and the exposure to solvent of atoms of a protein based on the atomic co-ordinates of the protein and on assumptions like those of Lee & Richards (1971).

1,158 citations

Journal ArticleDOI
TL;DR: The occurrence of larger continuous folds (“super-secondary structures”) has been detected in the comparison of lactate dehydrogenase with itself and with other protein structures.

857 citations