A new mathematical model for relative quantification in real-time RT-PCR.
Citations
20,580 citations
Cites methods from "A new mathematical model for relati..."
...The efficiency correction method calculates the relative expression ratio from the real-time PCR efficiencies and the C T (ref...
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12,469 citations
Cites background from "A new mathematical model for relati..."
...Clinical Chemistry 55:4 (2009) 617 parisontobeaccurate.Themostpopularmethodisnot necessarily the most appropriate, however, and alternative, more generalized quantitative models have been developed to correct for differences in amplification efficiency ( 62 ) and to allow the use of multiple reference genes (30)....
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7,196 citations
Cites background or methods from "A new mathematical model for relati..."
...It calculates the relative expression ratio on the basis of the PCR efficiency (E) and crossing point deviation (∆CP) of the investigated transcripts ( 6 ) and on a newly developed randomisation test macro....
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...Up to three CPs can be inserted in the table (run 1–3) per cDNA starting concentration and REST© determines the slope with a logarithmic algorithm, as published earlier (1, 6 ,14), as well as an indication of the linearity of this logarithmic alignment using Pearson’s correlation coefficient....
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...Equation 1 shows the most convenient mathematical model, which includes an efficiency correction for real-time PCR efficiency of the individual transcripts ( 6 )....
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...On the basis of the previously published mathematical model ( 6 ), REST© calculates the relative expression ratios on the basis of group means for target gene MT versus reference gene GAPDH and tests the group ratio results for significance....
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...The corresponding realtime PCR efficiency (E) of one cycle in the exponential phase was calculated according to the equation: E =1 0 [–1/slope] ,a s described earlier (1, 6 ,14)....
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4,231 citations
Cites methods from "A new mathematical model for relati..."
...Reporting of the amount of target mRNA requires an accurate template preparation and relevant standardisation (Pfaffl 2001)....
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...This affects more advanced methods of gene expression study such as real-time PCR (Pfaffl 2001) or microarrays (Schuchhardt et al. 2000), as well as the traditional blotting methods....
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...This affects more advanced methods of gene expression study such as real-time PCR (Pfaffl 2001) or microarrays (Schuchhardt et al....
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...The slope of linear regression model fitted over log-transformed data of serially diluted input DNA concentrations plotted against their CPs (Rasmussen 2000, Pfaffl 2001)....
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3,641 citations
Cites methods from "A new mathematical model for relati..."
...Depending on the settings, qBase will use the classic deltadelta-Ct method (100% PCR efficiency and one reference gene) [6], the Pfaffl modification of delta-delta-Ct (gene specific PCR efficiency correction and one reference gene) [7] or our generalized qBase model (gene specific PCR efficiency correction and multiple reference gene normalization)....
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...Pfaffl [7] modified the above model by adjusting for differences in PCR efficiency between the gene of interest (goi) and a reference gene (ref):...
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References
215,169 citations
4,100 citations
"A new mathematical model for relati..." refers background in this paper
...Nevertheless, the generation of stable and reliable standard material, either recombinant DNA or recombinant RNA, is very time consuming and it must be precisely quantified (2, 7 ,8)....
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...Therefore, quantification will always occur during the exponential phase, and it will not be affected by any reaction components becoming limited in the plateau phase ( 7 )....
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2,366 citations
"A new mathematical model for relati..." refers methods in this paper
...The concept of threshold fluorescence is the basis of an accurate and reproducible quantification using fluorescence-based RT–PCR methods (22)....
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2,278 citations
"A new mathematical model for relati..." refers background in this paper
...A linear relationship between the CP, crossing the threshold fluorescence, and the log of the start molecules input in the reaction is given (18,23)....
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1,609 citations