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A Simple Self-Maintaining Metabolic System: Robustness, Autocatalysis, Bistability

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TLDR
It is shown here that a simple (M,R)-system consisting of three interlocking catalytic cycles, with every catalyst produced by the system itself, can both establish a non-trivial steady state and maintain this despite continuous loss of the catalysts by irreversible degradation.
Abstract
A living organism must not only organize itself from within; it must also maintain its organization in the face of changes in its environment and degradation of its components. We show here that a simple (M,R)-system consisting of three interlocking catalytic cycles, with every catalyst produced by the system itself, can both establish a non-trivial steady state and maintain this despite continuous loss of the catalysts by irreversible degradation. As long as at least one catalyst is present at a sufficient concentration in the initial state, the others can be produced and maintained. The system shows bistability, because if the amount of catalyst in the initial state is insufficient to reach the non-trivial steady state the system collapses to a trivial steady state in which all fluxes are zero. It is also robust, because if one catalyst is catastrophically lost when the system is in steady state it can recreate the same state. There are three elementary flux modes, but none of them is an enzyme-maintaining mode, the entire network being necessary to maintain the two catalysts.

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Journal ArticleDOI

Biological organisation as closure of constraints.

TL;DR: A conceptual and formal characterisation of biological organisation as a closure of constraints is proposed, and how organisational closure can provide an operational tool for marking the boundaries between interacting biological systems is discussed.
Journal ArticleDOI

From L'Homme Machine to metabolic closure: steps towards understanding life

TL;DR: In this review, a variety of theories that embody the idea that all of the catalysts needed for an organism to stay alive must be produced by the organism itself are examined, with the aim of working towards the formulation of a unified theory of life.
Journal ArticleDOI

Autonomy and Enactivism: Towards a Theory of Sensorimotor Autonomous Agency

TL;DR: In this paper, the authors propose Bittorio (a 1D cellular automata) as a model of the operational closure of the nervous system as it fails to satisfy the required conditions for a sensorimotor constitution of experience.
Journal ArticleDOI

Norm-establishing and norm-following in autonomous agency

TL;DR: This work presents a minimal metabolic system that is coupled to a gradient-climbing chemotactic mechanism and introduces the concept of normative field as the change of environmental conditions required to bring the system back to its viable region.
Journal ArticleDOI

Biological regulation: controlling the system from within

TL;DR: It is argued that regulation consists in a specific form of second-order control, exerted over the core (constitutive) regime of production and maintenance of the components that actually put together the organism.
References
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Book

Autopoiesis and Cognition: The Realization of the Living

TL;DR: In this paper, Maturana et al. describe the organization of the living and discuss the role of the human brain in the brain's ability to learn and adapt to the environment.
Book

The origins of order

Book

What Is Life

Journal ArticleDOI

COPASI---a COmplex PAthway SImulator

TL;DR: COPASI is presented, a platform-independent and user-friendly biochemical simulator that offers several unique features, and numerical issues with these features are discussed; in particular, the criteria to switch between stochastic and deterministic simulation methods, hybrid deterministic-stochastic methods, and the importance of random number generator numerical resolution in Stochastic simulation.