A Structured Tumor-Immune Microenvironment in Triple Negative Breast Cancer Revealed by Multiplexed Ion Beam Imaging
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"A Structured Tumor-Immune Microenvi..." refers methods in this paper
...The nuclear images of patients 1 and 2 were manually segmented in ImageJ (Schneider et al., 2012) using a Wacom Intuos Draw graphics tablet as previously described (Van Valen et al., 2016)....
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...The nuclear images of patients 1 and 2 were manually segmented in ImageJ (Schneider et al., 2012) using a Wacom Intuos Draw graphics tablet as previously described (Van Valen et al....
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...NIH Image to ImageJ: 25 years of image analysis....
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20,442 citations
"A Structured Tumor-Immune Microenvi..." refers methods in this paper
...The neighbors of each cell were defined as cells with direct contact with the cell of interest and were identified using Haralick’s gray-level co-occurrence matrix (Haralick et al., 1973)....
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10,046 citations
"A Structured Tumor-Immune Microenvi..." refers background in this paper
...Since H3K9ac was shown to be correlated with open chromatin and H3K27me3 with closed chromatin (Kouzarides, 2007), these global changes in their ratios may indicate that cells on the tumor border are more transcriptionally active than those in the tumor center....
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6,318 citations
"A Structured Tumor-Immune Microenvi..." refers background in this paper
...However, due to the interdependence of immunoregulatory protein expression here, combination immunotherapies may provide only a modest increase to the pool of responsive patients, as observed in anti-PD-1 anti-CTLA-4 combination therapies in melanoma (Larkin et al., 2015)....
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5,811 citations
"A Structured Tumor-Immune Microenvi..." refers background in this paper
...This cluster of patients displayed increased expression of PD-L1, PD-1, and IDO by CD11c CD11b immune cells, a phenotype suggestive of myeloid derived suppressor cells (Gabrilovich and Nagaraj, 2009)....
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